RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 GUCY2FP51841 1108 aa15.24■□□□□ 0.03
COL4A1-201ENST00000375820 PNOCQ13519 176 aa15.24■□□□□ 0.03
COL4A1-201ENST00000375820 PNMA8AQ86V59 439 aaPredicted RBP15.24■□□□□ 0.03
COL4A1-201ENST00000375820 NELFBQ8WX92 580 aa15.24■□□□□ 0.03
COL4A1-201ENST00000375820 VPS37BQ9H9H4 285 aa15.24■□□□□ 0.03
COL4A1-201ENST00000375820 FEZ2Q9UHY8 353 aaPredicted RBP15.24■□□□□ 0.03
COL4A1-201ENST00000375820 FAM184BQ9ULE4 1060 aa15.24■□□□□ 0.03
COL4A1-201ENST00000375820 GIPC1O14908 333 aa15.24■□□□□ 0.03
COL4A1-201ENST00000375820 KRT15P19012 456 aa15.24■□□□□ 0.03
COL4A1-201ENST00000375820 DIS3L2Q8IYB7 885 aaKnown RBP15.24■□□□□ 0.03
COL4A1-201ENST00000375820 CSRNP2Q9H175 543 aa15.24■□□□□ 0.03
COL4A1-201ENST00000375820 EXOC3O60645 756 aa15.24■□□□□ 0.03
COL4A1-201ENST00000375820 RFC1P35251 1148 aaPredicted RBP15.24■□□□□ 0.03
COL4A1-201ENST00000375820 TPH2Q8IWU9 490 aa15.24■□□□□ 0.03
COL4A1-201ENST00000375820 ST7Q9NRC1 585 aa15.24■□□□□ 0.03
COL4A1-201ENST00000375820 VPS54Q9P1Q0 977 aa15.24■□□□□ 0.03
COL4A1-201ENST00000375820 SNX14Q9Y5W7 946 aa15.24■□□□□ 0.03
COL4A1-201ENST00000375820 ACTN4O43707 911 aaKnown RBP15.23■□□□□ 0.03
COL4A1-201ENST00000375820 STK10O94804 968 aaKnown RBP15.23■□□□□ 0.03
COL4A1-201ENST00000375820 VSIG1Q86XK7 387 aa15.23■□□□□ 0.03
COL4A1-201ENST00000375820 TACO1Q9BSH4 297 aaKnown RBP15.23■□□□□ 0.03
COL4A1-201ENST00000375820 OGFRQ9NZT2 677 aa15.23■□□□□ 0.03
COL4A1-201ENST00000375820 JAK2O60674 1132 aa15.23■□□□□ 0.03
COL4A1-201ENST00000375820 ABCB4P21439 1286 aa15.23■□□□□ 0.03
COL4A1-201ENST00000375820 HSPA2P54652 639 aa15.23■□□□□ 0.03
COL4A1-201ENST00000375820 CALCRLQ16602 461 aa15.23■□□□□ 0.03
COL4A1-201ENST00000375820 METTL13Q8N6R0 699 aa15.23■□□□□ 0.03
COL4A1-201ENST00000375820 RILPQ96NA2 401 aa15.23■□□□□ 0.03
COL4A1-201ENST00000375820 CETN3O15182 167 aa15.23■□□□□ 0.03
COL4A1-201ENST00000375820 PRPF6O94906 941 aaKnown RBP15.23■□□□□ 0.03
COL4A1-201ENST00000375820 ADKP55263 362 aaKnown RBP15.23■□□□□ 0.03
COL4A1-201ENST00000375820 SH2D4BQ5SQS7 431 aa15.23■□□□□ 0.03
COL4A1-201ENST00000375820 CDC37L1Q7L3B6 337 aa15.23■□□□□ 0.03
COL4A1-201ENST00000375820 RFX1P22670 979 aa15.23■□□□□ 0.03
COL4A1-201ENST00000375820 NUF2Q9BZD4 464 aa15.23■□□□□ 0.03
COL4A1-201ENST00000375820 SEPT10Q9P0V9 454 aa15.23■□□□□ 0.03
COL4A1-201ENST00000375820 LRWD1Q9UFC0 647 aa15.23■□□□□ 0.03
COL4A1-201ENST00000375820 FRMPD2Q68DX3 1309 aaPredicted RBP15.22■□□□□ 0.03
COL4A1-201ENST00000375820 ASXL1Q8IXJ9 1541 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 C4orf50Q6ZRC1 276 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 ARID4AP29374 1257 aaPredicted RBP15.22■□□□□ 0.03
COL4A1-201ENST00000375820 VPS41P49754 854 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 HAUS3Q68CZ6 603 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 NOP9Q86U38 636 aaKnown RBP15.22■□□□□ 0.03
COL4A1-201ENST00000375820 CCNL1Q9UK58 526 aaPredicted RBP15.22■□□□□ 0.03
COL4A1-201ENST00000375820 COBLO75128 1261 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 SAT1P21673 171 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 SLC1A4P43007 532 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 PUM3Q15397 648 aaKnown RBP15.22■□□□□ 0.03
COL4A1-201ENST00000375820 EAPPQ56P03 285 aaPredicted RBP15.22■□□□□ 0.03
COL4A1-201ENST00000375820 CC2D2AQ9P2K1 1620 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 ZNF202O95125 648 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 A1BGP04217 495 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 TNNI1P19237 187 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 CYP2J2P51589 502 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 ADCY7P51828 1080 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 SCYL2Q6P3W7 929 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 UHMK1Q8TAS1 419 aaKnown RBP15.22■□□□□ 0.03
COL4A1-201ENST00000375820 GGA1Q9UJY5 639 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 IVNS1ABPQ9Y6Y0 642 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 RALGAPBQ86X10 1494 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 TNRQ92752 1358 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 SPDYE16A6NNV3 312 aaPredicted RBP15.22■□□□□ 0.03
COL4A1-201ENST00000375820 SPDYE2Q495Y8 402 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 CCDC89Q8N998 374 aa15.22■□□□□ 0.03
COL4A1-201ENST00000375820 RRAGAQ7L523 313 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 SMC5Q8IY18 1101 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 IFT20Q8IY31 132 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 GBP7Q8N8V2 638 aaPredicted RBP15.21■□□□□ 0.03
COL4A1-201ENST00000375820 RILPL1Q5EBL4 403 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 CCDC62Q6P9F0 684 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 RASSF4Q9H2L5 321 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 PCDHB13Q9Y5F0 798 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 GBP1P32455 592 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 CLNS1AP54105 237 aaKnown RBP15.21■□□□□ 0.03
COL4A1-201ENST00000375820 KLHL30Q0D2K2 578 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 VWA3BQ502W6 1294 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 CACNA2D3Q8IZS8 1091 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 IQGAP2Q13576 1575 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 SYNJ2BP-COX16A0A087WUM0 186 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 CASQ2O14958 399 aaPredicted RBP15.21■□□□□ 0.03
COL4A1-201ENST00000375820 SLC9C1Q4G0N8 1177 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 CABP7Q86V35 215 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 MED10Q9BTT4 135 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 AZI2Q9H6S1 392 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 COX16Q9P0S2 106 aa15.21■□□□□ 0.03
COL4A1-201ENST00000375820 TOM1O60784 492 aa15.21■□□□□ 0.02
COL4A1-201ENST00000375820 NXNQ6DKJ4 435 aa15.21■□□□□ 0.02
COL4A1-201ENST00000375820 SH2D4AQ9H788 454 aa15.21■□□□□ 0.02
COL4A1-201ENST00000375820 DNM3Q9UQ16 869 aa15.21■□□□□ 0.02
COL4A1-201ENST00000375820 FAM102BQ5T8I3 360 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 CTAGE3PQ8IX95 158 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 DCLK2Q8N568 766 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 GOLGA6BA6NDN3 693 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 SND1Q7KZF4 910 aaKnown RBP eCLIP15.2■□□□□ 0.02
COL4A1-201ENST00000375820 SESTD1Q86VW0 696 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 GSDMBQ8TAX9 411 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 DDX17Q92841 729 aaKnown RBP15.2■□□□□ 0.02
COL4A1-201ENST00000375820 PAGR1Q9BTK6 254 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 ZBTB40Q9NUA8 1239 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms