RNA–Protein interactions for RNA: ENST00000375274.6

PTCH1-203, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 4,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-203ENST00000375274 PARP10Q53GL7 1025 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 ZNF589Q86UQ0 364 aaPredicted RBP12.9□□□□□ -0.34
PTCH1-203ENST00000375274 CCDC25Q86WR0 208 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 RPGRIP1Q96KN7 1286 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 PTCH1Q13635 1447 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 CLASP1Q7Z460 1538 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 TMEM110-MUSTN1A8MSY1 372 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 NSUN7Q8NE18 718 aaKnown RBP12.9□□□□□ -0.34
PTCH1-203ENST00000375274 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.9□□□□□ -0.34
PTCH1-203ENST00000375274 STX10O60499 249 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 CDC25BP30305 580 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 INPP5BP32019 993 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 PPFIA1Q13136 1202 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 CALCOCO2Q13137 446 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 DPCR1Q3MIW9 517 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 C6orf163Q5TEZ5 329 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 C11orf57Q6ZUT1 292 aaPredicted RBP12.9□□□□□ -0.34
PTCH1-203ENST00000375274 DNAJC10Q8IXB1 793 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 GDAP1L1Q96MZ0 367 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 SCLT1Q96NL6 688 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 CLIC6Q96NY7 704 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 RABEP2Q9H5N1 569 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 SAMD15Q9P1V8 674 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 CHD1O14646 1710 aa12.9□□□□□ -0.34
PTCH1-203ENST00000375274 CETN3O15182 167 aa12.9□□□□□ -0.35
PTCH1-203ENST00000375274 WHAMMP3Q1A5X7 153 aa12.9□□□□□ -0.35
PTCH1-203ENST00000375274 ATP6V0A2Q9Y487 856 aa12.9□□□□□ -0.35
PTCH1-203ENST00000375274 CCNT1O60563 726 aaKnown RBP12.89□□□□□ -0.35
PTCH1-203ENST00000375274 ST5P78524 1137 aa12.89□□□□□ -0.35
PTCH1-203ENST00000375274 TCIRG1Q13488 830 aa12.89□□□□□ -0.35
PTCH1-203ENST00000375274 CCDC6Q16204 474 aa12.89□□□□□ -0.35
PTCH1-203ENST00000375274 MKRN1Q9UHC7 482 aaKnown RBP12.89□□□□□ -0.35
PTCH1-203ENST00000375274 ATP2A1O14983 1001 aa12.89□□□□□ -0.35
PTCH1-203ENST00000375274 SLC39A14Q15043 492 aa12.89□□□□□ -0.35
PTCH1-203ENST00000375274 PROSER3Q2NL68 480 aa12.89□□□□□ -0.35
PTCH1-203ENST00000375274 IGSF1Q8N6C5 1336 aa12.89□□□□□ -0.35
PTCH1-203ENST00000375274 NONOQ15233 471 aaKnown RBP eCLIP12.89□□□□□ -0.35
PTCH1-203ENST00000375274 PPM1EQ8WY54 764 aa12.89□□□□□ -0.35
PTCH1-203ENST00000375274 LRWD1Q9UFC0 647 aa12.89□□□□□ -0.35
PTCH1-203ENST00000375274 MTUS1Q9ULD2 1270 aa12.89□□□□□ -0.35
PTCH1-203ENST00000375274 ZMYM6O95789 1325 aa12.89□□□□□ -0.35
PTCH1-203ENST00000375274 A0A087WWV3 80 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 ERCC3P19447 782 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 HIBADHP31937 336 aaKnown RBP12.88□□□□□ -0.35
PTCH1-203ENST00000375274 FMNL3Q8IVF7 1028 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 GBP6Q6ZN66 633 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 TMEM87AQ8NBN3 555 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 LRRC45Q96CN5 670 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 PPP1R13BQ96KQ4 1090 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 FTOQ9C0B1 505 aaKnown RBP eCLIP12.88□□□□□ -0.35
PTCH1-203ENST00000375274 ZC3H12CQ9C0D7 883 aaKnown RBP12.88□□□□□ -0.35
PTCH1-203ENST00000375274 IQCGQ9H095 443 aaKnown RBP12.88□□□□□ -0.35
PTCH1-203ENST00000375274 UGGT1Q9NYU2 1555 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 BCORL1Q5H9F3 1711 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 PDE6AP16499 860 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 LRRC24Q50LG9 513 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 TEX11Q8IYF3 940 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 CMTR1Q8N1G2 835 aaKnown RBP12.88□□□□□ -0.35
PTCH1-203ENST00000375274 FANCBQ8NB91 859 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 IFIH1Q9BYX4 1025 aaKnown RBP12.88□□□□□ -0.35
PTCH1-203ENST00000375274 PLCB3Q01970 1234 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 PAK2Q13177 524 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 NECTIN1Q15223 517 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 GPIHBP1Q8IV16 184 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 PDLIM2Q96JY6 352 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 POLR3EQ9NVU0 708 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 TMEM2Q9UHN6 1383 aa12.88□□□□□ -0.35
PTCH1-203ENST00000375274 GJC1P36383 396 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 CFAP221Q4G0U5 840 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 GSTA5Q7RTV2 222 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 KRT25Q7Z3Z0 450 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 POTEDQ86YR6 584 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 PPP1R14CQ8TAE6 165 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 NAP1L3Q99457 506 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-203ENST00000375274 FAM207AQ9NSI2 230 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-203ENST00000375274 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.87□□□□□ -0.35
PTCH1-203ENST00000375274 ARID4AP29374 1257 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-203ENST00000375274 ZMYM1Q5SVZ6 1142 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 SPATA1Q5VX52 437 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 TTLL7Q6ZT98 887 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 IFNL3Q8IZI9 196 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 PI4K2BQ8TCG2 481 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 SNX29Q8TEQ0 813 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 RABGGTAQ92696 567 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 HAUS4Q9H6D7 363 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 KCNK9Q9NPC2 374 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 AATFQ9NY61 560 aaKnown RBP eCLIP12.87□□□□□ -0.35
PTCH1-203ENST00000375274 MROH5Q6ZUA9 1318 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 EPB41P11171 864 aaKnown RBP12.87□□□□□ -0.35
PTCH1-203ENST00000375274 EEF2P13639 858 aaKnown RBP12.87□□□□□ -0.35
PTCH1-203ENST00000375274 DMTNQ08495 405 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 PPP1R7Q15435 360 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 HERC4Q5GLZ8 1057 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-203ENST00000375274 RUFY4Q6ZNE9 571 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 DYMQ7RTS9 669 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 FCHSD1Q86WN1 690 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 NAP1L4Q99733 375 aaKnown RBP12.87□□□□□ -0.35
PTCH1-203ENST00000375274 SAMD9LQ8IVG5 1584 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 KCNJ18B7U540 433 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 IKBKBO14920 756 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms