RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 GRNP28799 593 aaKnown RBP4.53□□□□□ -1.68
MCF2-202ENST00000370573 DGKGP49619 791 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 CABP4P57796 275 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 RAD51AP2Q09MP3 1159 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 MRPL58Q14197 206 aaKnown RBP4.53□□□□□ -1.68
MCF2-202ENST00000370573 ELOA3BQ3SY89 546 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 COX20Q5RI15 118 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 C20orf194Q5TEA3 1177 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 ELOA3Q8NG57 546 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 AVENQ9NQS1 362 aaPredicted RBP4.53□□□□□ -1.68
MCF2-202ENST00000370573 RNF19AQ9NV58 838 aa4.53□□□□□ -1.68
MCF2-202ENST00000370573 RGS17Q9UGC6 210 aaPredicted RBP4.53□□□□□ -1.68
MCF2-202ENST00000370573 MRC1P22897 1456 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 TOGARAM1Q9Y4F4 1720 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 TNS2Q63HR2 1409 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 HEG1Q9ULI3 1381 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 MICAL2O94851 1124 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 ERCC5P28715 1186 aaPredicted RBP4.52□□□□□ -1.69
MCF2-202ENST00000370573 ZNF790Q6PG37 636 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 PIGBQ92521 554 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 IFT43Q96FT9 208 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 DCTN4Q9UJW0 460 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 TNNQ9UQP3 1299 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 KDM3BQ7LBC6 1761 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 PRAMEF22A3QJZ6 481 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 SIN3BO75182 1162 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 TARSP26639 723 aaKnown RBP4.52□□□□□ -1.69
MCF2-202ENST00000370573 KCNQ4P56696 695 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 HIF1AQ16665 826 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 C11orf91Q3C1V1 193 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 RGL4Q8IZJ4 473 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 ZNF496Q96IT1 587 aaPredicted RBP4.52□□□□□ -1.69
MCF2-202ENST00000370573 FAM161BQ96MY7 647 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 PNMA5Q96PV4 448 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 UBE2OQ9C0C9 1292 aaKnown RBP4.52□□□□□ -1.69
MCF2-202ENST00000370573 THSD7AQ9UPZ6 1657 aa4.52□□□□□ -1.69
MCF2-202ENST00000370573 P4HBP07237 508 aaKnown RBP4.51□□□□□ -1.69
MCF2-202ENST00000370573 NFKB1P19838 968 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 INPP5BP32019 993 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 ADH7P40394 386 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 ALDH1L2Q3SY69 923 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 FAM26DQ5JW98 314 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 ACSBG1Q96GR2 724 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 GSX2Q9BZM3 304 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 ATG3Q9NT62 314 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 SMC4Q9NTJ3 1288 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 ASAP1Q9ULH1 1129 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 KAT6BQ8WYB5 2073 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 M0R082 166 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 GNB5O14775 395 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 KCNQ2O43526 872 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 SASH3O75995 380 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 PLA2G4EQ3MJ16 856 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 ZNF662Q6ZS27 426 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 G2E3Q7L622 706 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 DPH6Q7L8W6 267 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 PTF1AQ7RTS3 328 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 TREML1Q86YW5 311 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 CMTR1Q8N1G2 835 aaKnown RBP4.51□□□□□ -1.69
MCF2-202ENST00000370573 ZNF417Q8TAU3 575 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 PIK3R5Q8WYR1 880 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 FRAT1Q92837 279 aaPredicted RBP4.51□□□□□ -1.69
MCF2-202ENST00000370573 ZNF587Q96SQ5 575 aaPredicted RBP4.51□□□□□ -1.69
MCF2-202ENST00000370573 TMOD3Q9NYL9 352 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 NOB1Q9ULX3 412 aaKnown RBP4.51□□□□□ -1.69
MCF2-202ENST00000370573 BCL9O00512 1426 aa4.51□□□□□ -1.69
MCF2-202ENST00000370573 ITGB4P16144 1822 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 KRBA1A5PL33 1030 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 OPLAHO14841 1288 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 RLBP1P12271 317 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 CCINQ13939 588 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 EAPPQ56P03 285 aaPredicted RBP4.5□□□□□ -1.69
MCF2-202ENST00000370573 IER5Q5VY09 327 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 ZNF772Q68DY9 489 aaPredicted RBP4.5□□□□□ -1.69
MCF2-202ENST00000370573 ETFBKMTQ8IXQ9 262 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 NUDT8Q8WV74 236 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 TRIM11Q96F44 468 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.5□□□□□ -1.69
MCF2-202ENST00000370573 STARD13Q9Y3M8 1113 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.5□□□□□ -1.69
MCF2-202ENST00000370573 USP16Q9Y5T5 823 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 SOS1Q07889 1333 aaPredicted RBP4.5□□□□□ -1.69
MCF2-202ENST00000370573 PTCD1O75127 700 aaKnown RBP4.5□□□□□ -1.69
MCF2-202ENST00000370573 ALBP02768 609 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 ITGB2P05107 769 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 NEFLP07196 543 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 HOXB7P09629 217 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 EIF2S2P20042 333 aaKnown RBP4.5□□□□□ -1.69
MCF2-202ENST00000370573 RBM6P78332 1123 aaKnown RBP4.5□□□□□ -1.69
MCF2-202ENST00000370573 FKBP4Q02790 459 aaKnown RBP eCLIP4.5□□□□□ -1.69
MCF2-202ENST00000370573 PROSER3Q2NL68 480 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 METTL16Q86W50 562 aaKnown RBP4.5□□□□□ -1.69
MCF2-202ENST00000370573 EXOC6Q8TAG9 804 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 PANK1Q8TE04 598 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 TNFRSF25Q93038 417 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 SYTL4Q96C24 671 aaPredicted RBP4.5□□□□□ -1.69
MCF2-202ENST00000370573 MYO19Q96H55 970 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 CRBNQ96SW2 442 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 PLVAPQ9BX97 442 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 ZFATQ9P243 1243 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms