RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 AS3MTQ9HBK9 375 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 SAP30BPQ9UHR5 308 aaKnown RBP7.18□□□□□ -1.26
UPF2-201ENST00000356352 ANGEL1Q9UNK9 670 aaKnown RBP7.18□□□□□ -1.26
UPF2-201ENST00000356352 SH3TC1Q8TE82 1336 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 GBP6Q6ZN66 633 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 MIPOL1Q8TD10 442 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 IP6K1Q92551 441 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 MCUR1Q96AQ8 359 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 METTL22Q9BUU2 404 aaPredicted RBP7.18□□□□□ -1.26
UPF2-201ENST00000356352 MIS12Q9H081 205 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 CTTNBP2NLQ9P2B4 639 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.18□□□□□ -1.26
UPF2-201ENST00000356352 A0A1B0GUA9 196 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 RIOK3O14730 519 aaKnown RBP7.18□□□□□ -1.26
UPF2-201ENST00000356352 PFDN6O15212 129 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 ITGA6P23229 1130 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 ARHGAP25P42331 645 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 EVCP57679 992 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 IRX4P78413 519 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 TNNI3KQ59H18 835 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 CCDC84Q86UT8 332 aaPredicted RBP7.18□□□□□ -1.26
UPF2-201ENST00000356352 PLIN2Q99541 437 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 CLSTN2Q9H4D0 955 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 PPANQ9NQ55 473 aaKnown RBP7.18□□□□□ -1.26
UPF2-201ENST00000356352 FPGT-TNNI3KV9GXZ4 949 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 ATF7P17544 494 aaPredicted RBP7.17□□□□□ -1.26
UPF2-201ENST00000356352 SLC12A2P55011 1212 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 NLRP12P59046 1061 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 PPP2R5EQ16537 467 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 GRK7Q8WTQ7 553 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 RPGRIP1Q96KN7 1286 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 RAB17Q9H0T7 212 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 PODXL2Q9NZ53 605 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 PKD2L1Q9P0L9 805 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 LRWD1Q9UFC0 647 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 RAPGEF6Q8TEU7 1601 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 GOLGA8CPA6NN73 597 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 N4BP1O75113 896 aaKnown RBP7.17□□□□□ -1.26
UPF2-201ENST00000356352 NR1I2O75469 434 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 TRIM37O94972 964 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 PRIM1P49642 420 aaKnown RBP7.17□□□□□ -1.26
UPF2-201ENST00000356352 TCIRG1Q13488 830 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 MUM1L1Q5H9M0 696 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 UTP14CQ5TAP6 766 aaKnown RBP7.17□□□□□ -1.26
UPF2-201ENST00000356352 GOLGA5Q8TBA6 731 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 SNX29Q8TEQ0 813 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 CCDC51Q96ER9 411 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 HAUS8Q9BT25 410 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 ASIC3Q9UHC3 531 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 GJA3Q9Y6H8 435 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 SH3BGRP55822 239 aaPredicted RBP7.17□□□□□ -1.26
UPF2-201ENST00000356352 CALCRLQ16602 461 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 CFAP221Q4G0U5 840 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 PDZD4Q76G19 769 aaPredicted RBP7.17□□□□□ -1.26
UPF2-201ENST00000356352 CHST3Q7LGC8 479 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 PROCA1Q8NCQ7 364 aaPredicted RBP7.17□□□□□ -1.26
UPF2-201ENST00000356352 HVCN1Q96D96 273 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 WDR70Q9NW82 654 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 RTEL1Q9NZ71 1219 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 TRPC6Q9Y210 931 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 AFG3L2Q9Y4W6 797 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 PCDHB15Q9Y5E8 787 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 A0A1B0GUL7 405 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 H0YIN7 160 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 RASSF2P50749 326 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 PPFIA1Q13136 1202 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 CWF19L2Q2TBE0 894 aaKnown RBP7.17□□□□□ -1.26
UPF2-201ENST00000356352 SFMBT2Q5VUG0 894 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 PLEKHM2Q8IWE5 1019 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 CCDC89Q8N998 374 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 LPIN2Q92539 896 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 HAUS1Q96CS2 278 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 BEGAINQ9BUH8 593 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 USP26Q9BXU7 913 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 SPC25Q9HBM1 224 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 CCNL1Q9UK58 526 aaPredicted RBP7.17□□□□□ -1.26
UPF2-201ENST00000356352 PARD3Q8TEW0 1356 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 SLC27A2O14975 620 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 MYCLP12524 364 aaPredicted RBP7.17□□□□□ -1.26
UPF2-201ENST00000356352 HOXC9P31274 260 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 PHBP35232 272 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 TXKP42681 527 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 MYCT1Q8N699 235 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 HELBQ8NG08 1087 aaPredicted RBP7.17□□□□□ -1.26
UPF2-201ENST00000356352 ZFP91Q96JP5 570 aaPredicted RBP7.17□□□□□ -1.26
UPF2-201ENST00000356352 CCDC87Q9NVE4 849 aa7.17□□□□□ -1.26
UPF2-201ENST00000356352 ARPP21Q9UBL0 812 aaPredicted RBP7.17□□□□□ -1.26
UPF2-201ENST00000356352 A0A1B0GVL5 298 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 B4E1Z4 1266 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 EXOC3O60645 756 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 PPFIA4O75335 1185 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 VAMP4O75379 141 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 SLC1A4P43007 532 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 GNPTABQ3T906 1256 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 DPP8Q6V1X1 898 aaPredicted RBP7.16□□□□□ -1.26
UPF2-201ENST00000356352 POLKQ9UBT6 870 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 PRAG1Q86YV5 1406 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 ALDH1B1P30837 517 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 RSPH3Q86UC2 560 aa7.16□□□□□ -1.26
UPF2-201ENST00000356352 XAGE2Q96GT9 111 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms