RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 MUM1L1Q5H9M0 696 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 ZBTB43O43298 467 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 PRPF6O94906 941 aaKnown RBP13.92□□□□□ -0.18
COL6A3-203ENST00000353578 MRPS35P82673 323 aaKnown RBP13.92□□□□□ -0.18
COL6A3-203ENST00000353578 LRP2BPQ9P2M1 347 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 PCF11O94913 1555 aaKnown RBP13.92□□□□□ -0.18
COL6A3-203ENST00000353578 POLE2P56282 527 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 CBX8Q9HC52 389 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 TBC1D23Q9NUY8 699 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 MRGBPQ9NV56 204 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 TEDDM1Q5T9Z0 273 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 RETREG2Q8NC44 543 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 CFAP61Q8NHU2 1237 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 LMBRD1Q9NUN5 540 aa13.92□□□□□ -0.18
COL6A3-203ENST00000353578 IRX5P78411 483 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-203ENST00000353578 TRIM15Q9C019 465 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 KIF24Q5T7B8 1368 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 GSTA2P09210 222 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 KRT2P35908 639 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 C10orf76Q5T2E6 689 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 NDE1Q9NXR1 346 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 FAM135BQ49AJ0 1406 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 KRT15P19012 456 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 PARVBQ9HBI1 364 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 SYF2O95926 243 aaKnown RBP13.91□□□□□ -0.18
COL6A3-203ENST00000353578 SERPINB6P35237 376 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 SEPT8Q92599 483 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 FRMD4BQ9Y2L6 1034 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 SYNJ2O15056 1496 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 SNAPC4Q5SXM2 1469 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 RBM6P78332 1123 aaKnown RBP13.91□□□□□ -0.18
COL6A3-203ENST00000353578 SMIM23A6NLE4 172 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 THAP12O43422 761 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 PRPF31Q8WWY3 499 aaKnown RBP13.91□□□□□ -0.18
COL6A3-203ENST00000353578 TCHHQ07283 1943 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 PPP1R2P3Q6NXS1 205 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 TMTC3Q6ZXV5 915 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 TUBA8Q9NY65 449 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-203ENST00000353578 PASKQ96RG2 1323 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 PDE6CP51160 858 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 MKRN3Q13064 507 aaKnown RBP13.91□□□□□ -0.18
COL6A3-203ENST00000353578 RSPH3Q86UC2 560 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.91□□□□□ -0.184e-7■■■■■ 58.1
COL6A3-203ENST00000353578 DONSONQ9NYP3 566 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 SEPT3Q9UH03 358 aa13.91□□□□□ -0.18
COL6A3-203ENST00000353578 DIXDC1Q155Q3 683 aa13.9□□□□□ -0.18
COL6A3-203ENST00000353578 SLC8A3P57103 927 aa13.9□□□□□ -0.18
COL6A3-203ENST00000353578 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.9□□□□□ -0.18
COL6A3-203ENST00000353578 BRF1Q92994 677 aa13.9□□□□□ -0.18
COL6A3-203ENST00000353578 MAGEF1Q9HAY2 307 aa13.9□□□□□ -0.18
COL6A3-203ENST00000353578 ALG1Q9BT22 464 aa13.9□□□□□ -0.18
COL6A3-203ENST00000353578 TMCC1O94876 653 aa13.9□□□□□ -0.18
COL6A3-203ENST00000353578 PDE1AP54750 535 aa13.9□□□□□ -0.18
COL6A3-203ENST00000353578 PLCB3Q01970 1234 aa13.9□□□□□ -0.18
COL6A3-203ENST00000353578 KLHL29Q96CT2 875 aa13.9□□□□□ -0.18
COL6A3-203ENST00000353578 PSD3Q9NYI0 1048 aa13.9□□□□□ -0.18
COL6A3-203ENST00000353578 NUTM2FA1L443 756 aa13.9□□□□□ -0.18
COL6A3-203ENST00000353578 NUTM2GQ5VZR2 741 aa13.9□□□□□ -0.18
COL6A3-203ENST00000353578 SPTLC3Q9NUV7 552 aa13.9□□□□□ -0.18
COL6A3-203ENST00000353578 KRT75O95678 551 aa13.9□□□□□ -0.18
COL6A3-203ENST00000353578 ACBD5Q5T8D3 534 aaPredicted RBP13.9□□□□□ -0.18
COL6A3-203ENST00000353578 LRRC8CQ8TDW0 803 aa13.9□□□□□ -0.18
COL6A3-203ENST00000353578 A0A1B0GVL5 298 aa13.9□□□□□ -0.19
COL6A3-203ENST00000353578 TMED10P49755 219 aaKnown RBP13.9□□□□□ -0.19
COL6A3-203ENST00000353578 PEX26Q7Z412 305 aa13.9□□□□□ -0.19
COL6A3-203ENST00000353578 OGFOD1Q8N543 542 aa13.9□□□□□ -0.19
COL6A3-203ENST00000353578 VIRMAQ69YN4 1812 aaKnown RBP13.89□□□□□ -0.19
COL6A3-203ENST00000353578 TERB1Q8NA31 727 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 E7ENQ6 273 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 GNA11P29992 359 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 C20orf194Q5TEA3 1177 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 C3orf20Q8ND61 904 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 NDUFA13Q9P0J0 144 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 PPP2R2CQ9Y2T4 447 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 UBE4BO95155 1302 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 MCF2LO15068 1137 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 RNF123Q5XPI4 1314 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 EPB41P11171 864 aaKnown RBP13.89□□□□□ -0.19
COL6A3-203ENST00000353578 RTN1Q16799 776 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 RILPQ96NA2 401 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 PAK1Q13153 545 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 ANKRD44Q8N8A2 993 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 CYLC2Q14093 348 aaPredicted RBP13.89□□□□□ -0.19
COL6A3-203ENST00000353578 KRT80Q6KB66 452 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 INTS9Q9NV88 658 aaKnown RBP13.89□□□□□ -0.19
COL6A3-203ENST00000353578 GAPVD1Q14C86 1478 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 APOA1P02647 267 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 USP26Q9BXU7 913 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 TTI1O43156 1089 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 POLR3DP05423 398 aaPredicted RBP13.89□□□□□ -0.19
COL6A3-203ENST00000353578 KRT4P19013 534 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 RAP1GDS1P52306 607 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 ASPHQ12797 758 aa13.89□□□□□ -0.19
COL6A3-203ENST00000353578 IGHMBP2P38935 993 aaKnown RBP13.88□□□□□ -0.19
COL6A3-203ENST00000353578 ESR2Q92731 530 aa13.88□□□□□ -0.19
COL6A3-203ENST00000353578 RIC8AQ9NPQ8 531 aa13.88□□□□□ -0.19
COL6A3-203ENST00000353578 GNAT3A8MTJ3 354 aa13.88□□□□□ -0.19
COL6A3-203ENST00000353578 SPOPO43791 374 aa13.88□□□□□ -0.19
COL6A3-203ENST00000353578 LRRC8BQ6P9F7 803 aa13.88□□□□□ -0.19
COL6A3-203ENST00000353578 KIF2CQ99661 725 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms