RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 TTLL11Q8NHH1 800 aa16.77■□□□□ 0.28
COL17A1-201ENST00000353479 AS3MTQ9HBK9 375 aa16.77■□□□□ 0.28
COL17A1-201ENST00000353479 ZSWIM6Q9HCJ5 1215 aa16.77■□□□□ 0.28
COL17A1-201ENST00000353479 CWC15Q9P013 229 aaKnown RBP16.77■□□□□ 0.28
COL17A1-201ENST00000353479 TPCN1Q9ULQ1 816 aa16.77■□□□□ 0.28
COL17A1-201ENST00000353479 MAPK8IP1Q9UQF2 711 aa16.77■□□□□ 0.28
COL17A1-201ENST00000353479 CEP135Q66GS9 1140 aa16.77■□□□□ 0.27
COL17A1-201ENST00000353479 C1orf167Q5SNV9 1468 aa16.77■□□□□ 0.27
COL17A1-201ENST00000353479 ADCY9O60503 1353 aa16.77■□□□□ 0.27
COL17A1-201ENST00000353479 RPL13P26373 211 aaKnown RBP16.77■□□□□ 0.27
COL17A1-201ENST00000353479 ICA1Q05084 483 aa16.77■□□□□ 0.27
COL17A1-201ENST00000353479 MAP9Q49MG5 647 aa16.77■□□□□ 0.27
COL17A1-201ENST00000353479 SMCR8Q8TEV9 937 aaPredicted RBP16.77■□□□□ 0.27
COL17A1-201ENST00000353479 LSG1Q9H089 658 aaKnown RBP16.77■□□□□ 0.27
COL17A1-201ENST00000353479 ZSWIM4Q9H7M6 989 aa16.77■□□□□ 0.27
COL17A1-201ENST00000353479 XRCC6P12956 609 aaKnown RBP eCLIP16.76■□□□□ 0.27
COL17A1-201ENST00000353479 DCAF15Q66K64 600 aa16.76■□□□□ 0.27
COL17A1-201ENST00000353479 MAEAQ7L5Y9 396 aa16.76■□□□□ 0.27
COL17A1-201ENST00000353479 PDCL2Q8N4E4 241 aa16.76■□□□□ 0.27
COL17A1-201ENST00000353479 RGS22Q8NE09 1264 aa16.76■□□□□ 0.27
COL17A1-201ENST00000353479 MED23Q9ULK4 1368 aa16.76■□□□□ 0.27
COL17A1-201ENST00000353479 ARHGEF35A5YM69 484 aa16.76■□□□□ 0.27
COL17A1-201ENST00000353479 H7C1W4 665 aa16.76■□□□□ 0.27
COL17A1-201ENST00000353479 CCDC113Q9H0I3 377 aa16.76■□□□□ 0.27
COL17A1-201ENST00000353479 SETBP1Q9Y6X0 1596 aa16.76■□□□□ 0.27
COL17A1-201ENST00000353479 MYL5Q02045 173 aa16.76■□□□□ 0.27
COL17A1-201ENST00000353479 ATP8A2Q9NTI2 1148 aa16.76■□□□□ 0.27
COL17A1-201ENST00000353479 GRAPQ13588 217 aa16.76■□□□□ 0.27
COL17A1-201ENST00000353479 HLTFQ14527 1009 aaKnown RBP eCLIP16.76■□□□□ 0.27
COL17A1-201ENST00000353479 CLEC4GQ6UXB4 293 aa16.76■□□□□ 0.27
COL17A1-201ENST00000353479 GRAPLQ8TC17 118 aaPredicted RBP16.76■□□□□ 0.27
COL17A1-201ENST00000353479 NAA15Q9BXJ9 866 aaKnown RBP16.76■□□□□ 0.27
COL17A1-201ENST00000353479 ZNF589Q86UQ0 364 aaPredicted RBP16.75■□□□□ 0.27
COL17A1-201ENST00000353479 DCPSQ96C86 337 aaKnown RBP16.75■□□□□ 0.27
COL17A1-201ENST00000353479 INO80Q9ULG1 1556 aaPredicted RBP16.75■□□□□ 0.27
COL17A1-201ENST00000353479 USP31Q70CQ4 1352 aa16.75■□□□□ 0.27
COL17A1-201ENST00000353479 KLRF2D3W0D1 207 aa16.75■□□□□ 0.27
COL17A1-201ENST00000353479 PAGR1Q9BTK6 254 aa16.75■□□□□ 0.27
COL17A1-201ENST00000353479 OSBPL3Q9H4L5 887 aa16.75■□□□□ 0.27
COL17A1-201ENST00000353479 ZMYM6O95789 1325 aa16.75■□□□□ 0.27
COL17A1-201ENST00000353479 SULF1Q8IWU6 871 aa16.75■□□□□ 0.27
COL17A1-201ENST00000353479 MAP4K1Q92918 833 aa16.75■□□□□ 0.27
COL17A1-201ENST00000353479 FRMD4BQ9Y2L6 1034 aa16.75■□□□□ 0.27
COL17A1-201ENST00000353479 MCM3P25205 808 aa16.75■□□□□ 0.27
COL17A1-201ENST00000353479 SMTNP53814 917 aa16.75■□□□□ 0.27
COL17A1-201ENST00000353479 CNNM4Q6P4Q7 775 aa16.75■□□□□ 0.27
COL17A1-201ENST00000353479 SIRT2Q8IXJ6 389 aa16.75■□□□□ 0.27
COL17A1-201ENST00000353479 GPR101Q96P66 508 aaPredicted RBP16.75■□□□□ 0.27
COL17A1-201ENST00000353479 PFKFB2O60825 505 aa16.74■□□□□ 0.27
COL17A1-201ENST00000353479 SASH1O94885 1247 aa16.74■□□□□ 0.27
COL17A1-201ENST00000353479 IGKV5-2P06315 115 aa16.74■□□□□ 0.27
COL17A1-201ENST00000353479 ADD2P35612 726 aa16.74■□□□□ 0.27
COL17A1-201ENST00000353479 KCNQ2O43526 872 aa16.74■□□□□ 0.27
COL17A1-201ENST00000353479 ZNF202O95125 648 aa16.74■□□□□ 0.27
COL17A1-201ENST00000353479 IFFO1Q0D2I5 559 aa16.74■□□□□ 0.27
COL17A1-201ENST00000353479 CRB1P82279 1406 aa16.74■□□□□ 0.27
COL17A1-201ENST00000353479 RAD17O75943 681 aa16.74■□□□□ 0.27
COL17A1-201ENST00000353479 ABCB5Q2M3G0 1257 aa16.74■□□□□ 0.27
COL17A1-201ENST00000353479 HOOK3Q86VS8 718 aa16.74■□□□□ 0.27
COL17A1-201ENST00000353479 CCDC42Q96M95 316 aa16.74■□□□□ 0.27
COL17A1-201ENST00000353479 NPR1P16066 1061 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 BRDTQ58F21 947 aaPredicted RBP16.73■□□□□ 0.27
COL17A1-201ENST00000353479 DYMQ7RTS9 669 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 CLSTN2Q9H4D0 955 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 BSDC1Q9NW68 430 aaPredicted RBP16.73■□□□□ 0.27
COL17A1-201ENST00000353479 ALAS1P13196 640 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 GPKOWQ92917 476 aaPredicted RBP eCLIP16.73■□□□□ 0.27
COL17A1-201ENST00000353479 GPHNQ9NQX3 736 aaPredicted RBP16.73■□□□□ 0.27
COL17A1-201ENST00000353479 GINS2Q9Y248 185 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 PRKAB2O43741 272 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 GADD45BO75293 160 aaPredicted RBP16.73■□□□□ 0.27
COL17A1-201ENST00000353479 RAD51AP2Q09MP3 1159 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 POLA2Q14181 598 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 ADCK5Q3MIX3 580 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 GJD4Q96KN9 370 aaPredicted RBP16.73■□□□□ 0.27
COL17A1-201ENST00000353479 CSRNP1Q96S65 589 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 OVOS2A0A0G2JMS6 1433 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 OVOS2A0A0J9YW53 1432 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 OVOS2Q6IE36 1432 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 RAPGEF1Q13905 1077 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 IFT74Q96LB3 600 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 TTC12Q9H892 705 aaPredicted RBP16.73■□□□□ 0.27
COL17A1-201ENST00000353479 NARFQ9UHQ1 456 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 DNM3Q9UQ16 869 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 COL15A1P39059 1388 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 EPB41P11171 864 aaKnown RBP16.73■□□□□ 0.27
COL17A1-201ENST00000353479 EPHA10Q5JZY3 1008 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 CABP7Q86V35 215 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 RASEFQ8IZ41 740 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 TAOK3Q9H2K8 898 aa16.73■□□□□ 0.27
COL17A1-201ENST00000353479 LAMC1P11047 1609 aa16.72■□□□□ 0.27
COL17A1-201ENST00000353479 PTCH1Q13635 1447 aa16.72■□□□□ 0.27
COL17A1-201ENST00000353479 BLIDQ8IZY5 108 aa16.72■□□□□ 0.27
COL17A1-201ENST00000353479 LCORLQ8N3X6 602 aa16.72■□□□□ 0.27
COL17A1-201ENST00000353479 PSTPIP2Q9H939 334 aa16.72■□□□□ 0.27
COL17A1-201ENST00000353479 NOD1Q9Y239 953 aa16.72■□□□□ 0.27
COL17A1-201ENST00000353479 CYP19A1P11511 503 aaPredicted RBP16.72■□□□□ 0.27
COL17A1-201ENST00000353479 CCDC93Q567U6 631 aa16.72■□□□□ 0.27
COL17A1-201ENST00000353479 SLFN13Q68D06 897 aa16.72■□□□□ 0.27
COL17A1-201ENST00000353479 NOC4LQ9BVI4 516 aaKnown RBP16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms