RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 GOLGA8NF8WBI6 632 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 GUCY1B3Q02153 619 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 SPCS2Q15005 226 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 ZCWPW2Q504Y3 356 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 HABP4Q5JVS0 413 aaKnown RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 ZNF652Q9Y2D9 606 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 CLRN2A0PK11 232 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 B4DLN1 442 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 PSMC4P43686 418 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 WTAPQ15007 396 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 SLC44A4Q53GD3 710 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 FHOD1Q9Y613 1164 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 HFM1A2PYH4 1435 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 FAM135AQ9P2D6 1515 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 TOP1P11387 765 aaKnown RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 COL19A1Q14993 1142 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 TRMT10CQ7L0Y3 403 aaKnown RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 TRAPPC9Q96Q05 1148 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 NPHP3Q7Z494 1330 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 DDIT3P35638 169 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 CADPSQ9ULU8 1353 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 PDE1CQ14123 709 aaPredicted RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 SYBUQ9NX95 663 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 MRFAP1Q9Y605 127 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 LBRQ14739 615 aaKnown RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 PNMA6AP0CW24 399 aaPredicted RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 ATP2A2P16615 1042 aaKnown RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 KPNB1Q14974 876 aaKnown RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 CCDC178Q5BJE1 867 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 CCDC13Q8IYE1 715 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 SULT1B1O43704 296 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 APOA1P02647 267 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 TRIM55Q9BYV6 548 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 HMGB2P26583 209 aaKnown RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 TXNDC9O14530 226 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 PAPOLAP51003 745 aaKnown RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 C17orf53Q8N3J3 647 aaPredicted RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 STKLD1Q8NE28 680 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 SH3TC2Q8TF17 1288 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 IL1RAPL2Q9NP60 686 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 PABPC4Q13310 644 aaKnown RBP eCLIP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 SART3Q15020 963 aaKnown RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 ATP11CQ8NB49 1132 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 TRAIPQ9BWF2 469 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 SOS1Q07889 1333 aaPredicted RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 NCBP1Q09161 790 aaKnown RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 DPY19L2Q6NUT2 758 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 ARHGAP22Q7Z5H3 698 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 LRRC59Q96AG4 307 aaKnown RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 MAP3K20Q9NYL2 800 aaKnown RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 CATSPER2Q96P56 530 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 GOLGA6BA6NDN3 693 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 APBB1O00213 710 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 USP5P45974 858 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 OCA2Q04671 838 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 USP28Q96RU2 1077 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 EFHD1Q9BUP0 239 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 PPIP5K2O43314 1243 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 RNF40O75150 1001 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 SKOR1P84550 965 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 APOBRQ0VD83 1088 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 GRIK3Q13003 919 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 RASSF5Q8WWW0 418 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 FAM129AQ9BZQ8 928 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 FGFR1OP2Q9NVK5 253 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 ETF1P62495 437 aaKnown RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 PSMD2Q13200 908 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 BIRC3Q13489 604 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 PPP4R4Q6NUP7 873 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 TOGARAM2Q6ZUX3 1019 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 TBATAQ96M53 351 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 PHF8Q9UPP1 1060 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 GOLGA8KD6RF30 607 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 NOP53Q9NZM5 478 aaKnown RBP4.17□□□□□ -1.74
SYNE2-202ENST00000344113 ZNF711Q9Y462 761 aa4.17□□□□□ -1.74
SYNE2-202ENST00000344113 A0A1W2PRG0 241 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 HGSO14964 777 aaPredicted RBP4.16□□□□□ -1.74
SYNE2-202ENST00000344113 KCNA1Q09470 495 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 TRIM74Q86UV6 250 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 TRIM73Q86UV7 250 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 CALR3Q96L12 384 aaKnown RBP4.16□□□□□ -1.74
SYNE2-202ENST00000344113 CARD11Q9BXL7 1154 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 CNOT10Q9H9A5 744 aaKnown RBP4.16□□□□□ -1.74
SYNE2-202ENST00000344113 KIF9Q9HAQ2 790 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 RBM27Q9P2N5 1060 aaKnown RBP4.16□□□□□ -1.74
SYNE2-202ENST00000344113 POTEJP0CG39 1038 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 MTHFD1LQ6UB35 978 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 SPATA17Q96L03 361 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 SESN1Q9Y6P5 492 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 CDKL2Q92772 493 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 MTMR3Q13615 1198 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 SH3GL2Q99962 352 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 MRGBPQ9NV56 204 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 VPS18Q9P253 973 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 SPAG1Q07617 926 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 TIMMDC1Q9NPL8 285 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 DISC1Q9NRI5 854 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 VAMP4O75379 141 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 CRBNQ96SW2 442 aa4.16□□□□□ -1.74
SYNE2-202ENST00000344113 PCDHGA4Q9Y5G9 962 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms