RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 CATIPQ7Z7H3 387 aa17.12■□□□□ 0.33
CLCNKA-201ENST00000331433 RNF26Q9BY78 433 aaPredicted RBP17.12■□□□□ 0.33
CLCNKA-201ENST00000331433 CRNKL1Q9BZJ0 848 aaKnown RBP17.12■□□□□ 0.33
CLCNKA-201ENST00000331433 VPS54Q9P1Q0 977 aa17.12■□□□□ 0.33
CLCNKA-201ENST00000331433 KCNH3Q9ULD8 1083 aa17.12■□□□□ 0.33
CLCNKA-201ENST00000331433 PCDHB6Q9Y5E3 794 aa17.12■□□□□ 0.33
CLCNKA-201ENST00000331433 PDS5AQ29RF7 1337 aaKnown RBP17.12■□□□□ 0.33
CLCNKA-201ENST00000331433 THSD7AQ9UPZ6 1657 aa17.12■□□□□ 0.33
CLCNKA-201ENST00000331433 BAZ2BQ9UIF8 2168 aaKnown RBP17.11■□□□□ 0.33
CLCNKA-201ENST00000331433 FAM237AA0A1B0GTK4 181 aa17.11■□□□□ 0.33
CLCNKA-201ENST00000331433 FAM47AQ5JRC9 791 aa17.11■□□□□ 0.33
CLCNKA-201ENST00000331433 FILIP1Q7Z7B0 1213 aa17.11■□□□□ 0.33
CLCNKA-201ENST00000331433 ANKIB1Q9P2G1 1089 aa17.11■□□□□ 0.33
CLCNKA-201ENST00000331433 TAF1LQ8IZX4 1826 aa17.11■□□□□ 0.33
CLCNKA-201ENST00000331433 AKAP17AQ02040 695 aaKnown RBP17.11■□□□□ 0.33
CLCNKA-201ENST00000331433 FUT2Q10981 343 aa17.11■□□□□ 0.33
CLCNKA-201ENST00000331433 TROAPQ12815 778 aa17.11■□□□□ 0.33
CLCNKA-201ENST00000331433 PKN1Q16512 942 aa17.11■□□□□ 0.33
CLCNKA-201ENST00000331433 RILPL1Q5EBL4 403 aa17.11■□□□□ 0.33
CLCNKA-201ENST00000331433 BPIFA3Q9BQP9 254 aa17.11■□□□□ 0.33
CLCNKA-201ENST00000331433 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.11■□□□□ 0.33
CLCNKA-201ENST00000331433 FAM205CA6NFA0 338 aa17.1■□□□□ 0.33
CLCNKA-201ENST00000331433 NFIXQ14938 502 aa17.1■□□□□ 0.33
CLCNKA-201ENST00000331433 TRAPPC3LQ5T215 181 aa17.1■□□□□ 0.33
CLCNKA-201ENST00000331433 FAM196AQ6ZSG2 479 aa17.1■□□□□ 0.33
CLCNKA-201ENST00000331433 METTL16Q86W50 562 aaKnown RBP17.1■□□□□ 0.33
CLCNKA-201ENST00000331433 CABP5Q9NP86 173 aa17.1■□□□□ 0.33
CLCNKA-201ENST00000331433 V9GY48 417 aaPredicted RBP17.1■□□□□ 0.33
CLCNKA-201ENST00000331433 IRS2Q9Y4H2 1338 aa17.1■□□□□ 0.33
CLCNKA-201ENST00000331433 RBM10P98175 930 aaKnown RBP17.1■□□□□ 0.33
CLCNKA-201ENST00000331433 DZIP1Q86YF9 867 aaKnown RBP17.1■□□□□ 0.33
CLCNKA-201ENST00000331433 TUBE1Q9UJT0 475 aa17.1■□□□□ 0.33
CLCNKA-201ENST00000331433 FBXO2Q9UK22 296 aaPredicted RBP17.1■□□□□ 0.33
CLCNKA-201ENST00000331433 FOXN1O15353 648 aa17.09■□□□□ 0.33
CLCNKA-201ENST00000331433 NCAPHQ15003 741 aa17.09■□□□□ 0.33
CLCNKA-201ENST00000331433 PPP2R5BQ15173 497 aa17.09■□□□□ 0.33
CLCNKA-201ENST00000331433 KRBA2Q6ZNG9 492 aa17.09■□□□□ 0.33
CLCNKA-201ENST00000331433 LRRC8AQ8IWT6 810 aa17.09■□□□□ 0.33
CLCNKA-201ENST00000331433 CNNM3Q8NE01 707 aa17.09■□□□□ 0.33
CLCNKA-201ENST00000331433 GPR101Q96P66 508 aaPredicted RBP17.09■□□□□ 0.33
CLCNKA-201ENST00000331433 PCP11498 1178 aaKnown RBP17.09■□□□□ 0.33
CLCNKA-201ENST00000331433 HSPA1LP34931 641 aa17.09■□□□□ 0.33
CLCNKA-201ENST00000331433 EARS2Q5JPH6 523 aaKnown RBP17.09■□□□□ 0.33
CLCNKA-201ENST00000331433 ATP8A2Q9NTI2 1148 aa17.09■□□□□ 0.33
CLCNKA-201ENST00000331433 CCDC88AQ3V6T2 1871 aa17.08■□□□□ 0.33
CLCNKA-201ENST00000331433 PTPREP23469 700 aa17.08■□□□□ 0.33
CLCNKA-201ENST00000331433 FOXP4Q8IVH2 680 aaPredicted RBP17.08■□□□□ 0.33
CLCNKA-201ENST00000331433 CNBD1Q8NA66 436 aa17.08■□□□□ 0.33
CLCNKA-201ENST00000331433 MYRIPQ8NFW9 859 aa17.08■□□□□ 0.33
CLCNKA-201ENST00000331433 PRPF3O43395 683 aaKnown RBP17.08■□□□□ 0.32
CLCNKA-201ENST00000331433 ORC4O43929 436 aa17.08■□□□□ 0.32
CLCNKA-201ENST00000331433 LY75O60449 1722 aa17.08■□□□□ 0.32
CLCNKA-201ENST00000331433 SMC2O95347 1197 aa17.08■□□□□ 0.32
CLCNKA-201ENST00000331433 GRAPQ13588 217 aa17.08■□□□□ 0.32
CLCNKA-201ENST00000331433 GRAPLQ8TC17 118 aaPredicted RBP17.08■□□□□ 0.32
CLCNKA-201ENST00000331433 PRIMPOLQ96LW4 560 aa17.08■□□□□ 0.32
CLCNKA-201ENST00000331433 XPO4Q9C0E2 1151 aaKnown RBP17.08■□□□□ 0.32
CLCNKA-201ENST00000331433 LRRC4BQ9NT99 713 aa17.08■□□□□ 0.32
CLCNKA-201ENST00000331433 MCM9Q9NXL9 1143 aa17.08■□□□□ 0.32
CLCNKA-201ENST00000331433 IFNKQ9P0W0 207 aa17.08■□□□□ 0.32
CLCNKA-201ENST00000331433 USP17L8P0C7I0 530 aa17.07■□□□□ 0.32
CLCNKA-201ENST00000331433 PHF20Q9BVI0 1012 aa17.07■□□□□ 0.32
CLCNKA-201ENST00000331433 RBM28Q9NW13 759 aaKnown RBP17.07■□□□□ 0.32
CLCNKA-201ENST00000331433 ARPP21Q9UBL0 812 aaPredicted RBP17.07■□□□□ 0.32
CLCNKA-201ENST00000331433 PCDHA5Q9Y5H7 936 aa17.07■□□□□ 0.32
CLCNKA-201ENST00000331433 LAMB1P07942 1786 aa17.07■□□□□ 0.32
CLCNKA-201ENST00000331433 XBP1P17861 261 aa17.07■□□□□ 0.32
CLCNKA-201ENST00000331433 LMOD1P29536 600 aaPredicted RBP17.07■□□□□ 0.32
CLCNKA-201ENST00000331433 TMTC3Q6ZXV5 915 aa17.07■□□□□ 0.32
CLCNKA-201ENST00000331433 GJD4Q96KN9 370 aaPredicted RBP17.07■□□□□ 0.32
CLCNKA-201ENST00000331433 FAM13BQ9NYF5 915 aa17.07■□□□□ 0.32
CLCNKA-201ENST00000331433 DLEC1Q9Y238 1755 aa17.07■□□□□ 0.32
CLCNKA-201ENST00000331433 MAST2Q6P0Q8 1798 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 DYNC1I1O14576 645 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 POLR2DO15514 142 aaKnown RBP17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 DDAH1O94760 285 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 DIXDC1Q155Q3 683 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 GRIK5Q16478 980 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 USP49Q70CQ1 688 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 SRBD1Q8N5C6 995 aaKnown RBP17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 C16orf45Q96MC5 204 aaPredicted RBP17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 SBF2Q86WG5 1849 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 KIAA1551Q9HCM1 1747 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 TSPY2A6NKD2 308 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 SMTNL1A8MU46 457 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 CALM1P0DP23 149 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 CALM2P0DP24 149 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 CALM3P0DP25 149 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 ATP1A3P13637 1013 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 KRT2P35908 639 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 HSP90AA2PQ14568 343 aaPredicted RBP17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 NOM1Q5C9Z4 860 aaKnown RBP17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 PDILTQ8N807 584 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 TSC1Q92574 1164 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 HSD3B7Q9H2F3 369 aa17.06■□□□□ 0.32
CLCNKA-201ENST00000331433 CNTNAP5Q8WYK1 1306 aa17.05■□□□□ 0.32
CLCNKA-201ENST00000331433 LDHBP07195 334 aaKnown RBP17.05■□□□□ 0.32
CLCNKA-201ENST00000331433 PDE4BQ07343 736 aa17.05■□□□□ 0.32
CLCNKA-201ENST00000331433 SPTY2D1Q68D10 685 aaPredicted RBP17.05■□□□□ 0.32
CLCNKA-201ENST00000331433 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms