RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 THSD7AQ9UPZ6 1657 aa16.76■□□□□ 0.27
TPM3-206ENST00000330188 USP17L12C9JPN9 530 aa16.76■□□□□ 0.27
TPM3-206ENST00000330188 USP17L21D6R901 530 aa16.76■□□□□ 0.27
TPM3-206ENST00000330188 IKBKBO14920 756 aa16.76■□□□□ 0.27
TPM3-206ENST00000330188 PTPREP23469 700 aa16.76■□□□□ 0.27
TPM3-206ENST00000330188 GRIN1Q05586 938 aa16.76■□□□□ 0.27
TPM3-206ENST00000330188 PKN1Q16512 942 aa16.76■□□□□ 0.27
TPM3-206ENST00000330188 FILIP1Q7Z7B0 1213 aa16.76■□□□□ 0.27
TPM3-206ENST00000330188 AMIGO3Q86WK7 504 aa16.76■□□□□ 0.27
TPM3-206ENST00000330188 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.76■□□□□ 0.27
TPM3-206ENST00000330188 TM4SF1P30408 202 aa16.75■□□□□ 0.27
TPM3-206ENST00000330188 EVX2Q03828 476 aa16.75■□□□□ 0.27
TPM3-206ENST00000330188 TPTE2Q6XPS3 522 aa16.75■□□□□ 0.27
TPM3-206ENST00000330188 IQCA1Q86XH1 822 aa16.75■□□□□ 0.27
TPM3-206ENST00000330188 XPO4Q9C0E2 1151 aaKnown RBP16.75■□□□□ 0.27
TPM3-206ENST00000330188 PCDHB6Q9Y5E3 794 aa16.75■□□□□ 0.27
TPM3-206ENST00000330188 SBF2Q86WG5 1849 aa16.75■□□□□ 0.27
TPM3-206ENST00000330188 LY75O60449 1722 aa16.75■□□□□ 0.27
TPM3-206ENST00000330188 PRDX5P30044 214 aa16.75■□□□□ 0.27
TPM3-206ENST00000330188 TPM4P67936 248 aa16.75■□□□□ 0.27
TPM3-206ENST00000330188 CCZ1BP86790 482 aa16.75■□□□□ 0.27
TPM3-206ENST00000330188 CCZ1P86791 482 aaPredicted RBP16.75■□□□□ 0.27
TPM3-206ENST00000330188 CHAF1AQ13111 956 aaPredicted RBP16.75■□□□□ 0.27
TPM3-206ENST00000330188 SPECC1Q5M775 1068 aa16.75■□□□□ 0.27
TPM3-206ENST00000330188 CATIPQ7Z7H3 387 aa16.75■□□□□ 0.27
TPM3-206ENST00000330188 ELOA2Q8IYF1 753 aaPredicted RBP16.75■□□□□ 0.27
TPM3-206ENST00000330188 CNNM3Q8NE01 707 aa16.75■□□□□ 0.27
TPM3-206ENST00000330188 ARHGEF1Q92888 912 aaKnown RBP16.75■□□□□ 0.27
TPM3-206ENST00000330188 OSBPL5Q9H0X9 879 aaPredicted RBP16.75■□□□□ 0.27
TPM3-206ENST00000330188 DCP1AQ9NPI6 582 aaPredicted RBP16.75■□□□□ 0.27
TPM3-206ENST00000330188 AATFQ9NY61 560 aaKnown RBP eCLIP16.75■□□□□ 0.27
TPM3-206ENST00000330188 IFNKQ9P0W0 207 aa16.75■□□□□ 0.27
TPM3-206ENST00000330188 CCNL1Q9UK58 526 aaPredicted RBP16.75■□□□□ 0.27
TPM3-206ENST00000330188 RTCBQ9Y3I0 505 aaKnown RBP16.75■□□□□ 0.27
TPM3-206ENST00000330188 IRS2Q9Y4H2 1338 aa16.74■□□□□ 0.27
TPM3-206ENST00000330188 PRPF3O43395 683 aaKnown RBP16.74■□□□□ 0.27
TPM3-206ENST00000330188 PLEKHA8P1O95397 391 aa16.74■□□□□ 0.27
TPM3-206ENST00000330188 AKAP17AQ02040 695 aaKnown RBP16.74■□□□□ 0.27
TPM3-206ENST00000330188 TROAPQ12815 778 aa16.74■□□□□ 0.27
TPM3-206ENST00000330188 FOXP4Q8IVH2 680 aaPredicted RBP16.74■□□□□ 0.27
TPM3-206ENST00000330188 CRNKL1Q9BZJ0 848 aaKnown RBP16.74■□□□□ 0.27
TPM3-206ENST00000330188 HSD3B7Q9H2F3 369 aa16.74■□□□□ 0.27
TPM3-206ENST00000330188 PDCL3Q9H2J4 239 aa16.74■□□□□ 0.27
TPM3-206ENST00000330188 RBM28Q9NW13 759 aaKnown RBP16.74■□□□□ 0.27
TPM3-206ENST00000330188 IMPACTQ9P2X3 320 aa16.74■□□□□ 0.27
TPM3-206ENST00000330188 ORC4O43929 436 aa16.73■□□□□ 0.27
TPM3-206ENST00000330188 SMC2O95347 1197 aa16.73■□□□□ 0.27
TPM3-206ENST00000330188 GSDMDP57764 484 aa16.73■□□□□ 0.27
TPM3-206ENST00000330188 MDM2Q00987 491 aaPredicted RBP16.73■□□□□ 0.27
TPM3-206ENST00000330188 TXNRD3Q86VQ6 643 aa16.73■□□□□ 0.27
TPM3-206ENST00000330188 FNBP4Q8N3X1 1017 aaPredicted RBP16.73■□□□□ 0.27
TPM3-206ENST00000330188 C16orf45Q96MC5 204 aaPredicted RBP16.73■□□□□ 0.27
TPM3-206ENST00000330188 PHF20Q9BVI0 1012 aa16.73■□□□□ 0.27
TPM3-206ENST00000330188 VPS54Q9P1Q0 977 aa16.73■□□□□ 0.27
TPM3-206ENST00000330188 RIOK3O14730 519 aaKnown RBP16.73■□□□□ 0.27
TPM3-206ENST00000330188 DDAH1O94760 285 aa16.73■□□□□ 0.27
TPM3-206ENST00000330188 CALM1P0DP23 149 aa16.73■□□□□ 0.27
TPM3-206ENST00000330188 CALM2P0DP24 149 aa16.73■□□□□ 0.27
TPM3-206ENST00000330188 CALM3P0DP25 149 aa16.73■□□□□ 0.27
TPM3-206ENST00000330188 SKILP12757 684 aa16.73■□□□□ 0.27
TPM3-206ENST00000330188 XBP1P17861 261 aa16.73■□□□□ 0.27
TPM3-206ENST00000330188 ZNF579Q8NAF0 562 aaKnown RBP16.73■□□□□ 0.27
TPM3-206ENST00000330188 CABP5Q9NP86 173 aa16.73■□□□□ 0.27
TPM3-206ENST00000330188 ATP8A2Q9NTI2 1148 aa16.73■□□□□ 0.27
TPM3-206ENST00000330188 CEP131Q9UPN4 1083 aa16.73■□□□□ 0.27
TPM3-206ENST00000330188 PCDHA5Q9Y5H7 936 aa16.73■□□□□ 0.27
TPM3-206ENST00000330188 SRPRBQ9Y5M8 271 aaKnown RBP16.73■□□□□ 0.27
TPM3-206ENST00000330188 ZBTB22O15209 634 aa16.72■□□□□ 0.27
TPM3-206ENST00000330188 FOXN1O15353 648 aa16.72■□□□□ 0.27
TPM3-206ENST00000330188 LMOD1P29536 600 aaPredicted RBP16.72■□□□□ 0.27
TPM3-206ENST00000330188 MYL5Q02045 173 aa16.72■□□□□ 0.27
TPM3-206ENST00000330188 TPD52L1Q16890 204 aaPredicted RBP16.72■□□□□ 0.27
TPM3-206ENST00000330188 TSC1Q92574 1164 aa16.72■□□□□ 0.27
TPM3-206ENST00000330188 MORC2Q9Y6X9 1032 aaPredicted RBP16.72■□□□□ 0.27
TPM3-206ENST00000330188 hCG_1642624A0A1W2PR95 340 aa16.71■□□□□ 0.27
TPM3-206ENST00000330188 FAM205CA6NFA0 338 aa16.71■□□□□ 0.27
TPM3-206ENST00000330188 CYP2D6P10635 497 aa16.71■□□□□ 0.27
TPM3-206ENST00000330188 TNNT1P13805 278 aa16.71■□□□□ 0.27
TPM3-206ENST00000330188 KRT2P35908 639 aa16.71■□□□□ 0.27
TPM3-206ENST00000330188 FANCCQ00597 558 aa16.71■□□□□ 0.27
TPM3-206ENST00000330188 SBK1Q52WX2 424 aa16.71■□□□□ 0.27
TPM3-206ENST00000330188 EARS2Q5JPH6 523 aaKnown RBP16.71■□□□□ 0.27
TPM3-206ENST00000330188 FAM182BQ5T319 152 aa16.71■□□□□ 0.27
TPM3-206ENST00000330188 TMED8Q6PL24 325 aaPredicted RBP16.71■□□□□ 0.27
TPM3-206ENST00000330188 TMTC3Q6ZXV5 915 aa16.71■□□□□ 0.27
TPM3-206ENST00000330188 MAP7D2Q96T17 732 aa16.71■□□□□ 0.27
TPM3-206ENST00000330188 ARPP21Q9UBL0 812 aaPredicted RBP16.71■□□□□ 0.27
TPM3-206ENST00000330188 V9GY48 417 aaPredicted RBP16.71■□□□□ 0.27
TPM3-206ENST00000330188 CNTNAP5Q8WYK1 1306 aa16.71■□□□□ 0.27
TPM3-206ENST00000330188 POLR2DO15514 142 aaKnown RBP16.7■□□□□ 0.26
TPM3-206ENST00000330188 ATP1A3P13637 1013 aa16.7■□□□□ 0.26
TPM3-206ENST00000330188 ATP2B1P20020 1258 aa16.7■□□□□ 0.26
TPM3-206ENST00000330188 BMP6P22004 513 aa16.7■□□□□ 0.26
TPM3-206ENST00000330188 TMC6Q7Z403 805 aa16.7■□□□□ 0.26
TPM3-206ENST00000330188 SERTAD1Q9UHV2 236 aa16.7■□□□□ 0.26
TPM3-206ENST00000330188 JAG2Q9Y219 1238 aa16.7■□□□□ 0.26
TPM3-206ENST00000330188 USP27XA6NNY8 438 aa16.7■□□□□ 0.26
TPM3-206ENST00000330188 NMT2O60551 498 aa16.7■□□□□ 0.26
TPM3-206ENST00000330188 POSTNQ15063 836 aa16.7■□□□□ 0.26
TPM3-206ENST00000330188 FAM47AQ5JRC9 791 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms