RNA–Protein interactions for RNA: ENST00000322344.7

PNKP-201, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PNKP, Length 2,041 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-201ENST00000322344 FAM98CQ17RN3 349 aaKnown RBP25.67■■□□□ 1.7
PNKP-201ENST00000322344 NSUN4Q96CB9 384 aaKnown RBP25.67■■□□□ 1.7
PNKP-201ENST00000322344 SETDB2Q96T68 719 aa25.67■■□□□ 1.7
PNKP-201ENST00000322344 SRPRBQ9Y5M8 271 aaKnown RBP25.67■■□□□ 1.7
PNKP-201ENST00000322344 DDAH1O94760 285 aa25.66■■□□□ 1.7
PNKP-201ENST00000322344 WTIPA6NIX2 430 aaPredicted RBP25.66■■□□□ 1.7
PNKP-201ENST00000322344 NRDCO43847 1150 aa25.66■■□□□ 1.7
PNKP-201ENST00000322344 CTR9Q6PD62 1173 aa25.66■■□□□ 1.7
PNKP-201ENST00000322344 TMC6Q7Z403 805 aa25.66■■□□□ 1.7
PNKP-201ENST00000322344 CMTR1Q8N1G2 835 aaKnown RBP25.66■■□□□ 1.7
PNKP-201ENST00000322344 ZNF384Q8TF68 577 aa25.66■■□□□ 1.7
PNKP-201ENST00000322344 ORC4O43929 436 aa25.65■■□□□ 1.7
PNKP-201ENST00000322344 HIBADHP31937 336 aaKnown RBP25.65■■□□□ 1.7
PNKP-201ENST00000322344 MDM2Q00987 491 aaPredicted RBP25.65■■□□□ 1.7
PNKP-201ENST00000322344 NR5A1Q13285 461 aa25.65■■□□□ 1.7
PNKP-201ENST00000322344 VPS72Q15906 364 aa25.65■■□□□ 1.7
PNKP-201ENST00000322344 KANK3Q6NY19 840 aa25.65■■□□□ 1.7
PNKP-201ENST00000322344 CRNKL1Q9BZJ0 848 aaKnown RBP25.65■■□□□ 1.7
PNKP-201ENST00000322344 PCDHA5Q9Y5H7 936 aa25.65■■□□□ 1.7
PNKP-201ENST00000322344 COL24A1Q17RW2 1714 aa25.65■■□□□ 1.7
PNKP-201ENST00000322344 IGSF3O75054 1194 aa25.64■■□□□ 1.7
PNKP-201ENST00000322344 KCNJ6P48051 423 aa25.64■■□□□ 1.7
PNKP-201ENST00000322344 FUT2Q10981 343 aa25.64■■□□□ 1.7
PNKP-201ENST00000322344 ISM2Q6H9L7 571 aa25.64■■□□□ 1.7
PNKP-201ENST00000322344 NBPF5PQ86XG9 351 aaPredicted RBP25.64■■□□□ 1.7
PNKP-201ENST00000322344 PCDHB6Q9Y5E3 794 aa25.64■■□□□ 1.7
PNKP-201ENST00000322344 LMOD1P29536 600 aaPredicted RBP25.64■■□□□ 1.69
PNKP-201ENST00000322344 KRT2P35908 639 aa25.64■■□□□ 1.69
PNKP-201ENST00000322344 CEP135Q66GS9 1140 aa25.64■■□□□ 1.69
PNKP-201ENST00000322344 NYAP1Q6ZVC0 841 aa25.64■■□□□ 1.69
PNKP-201ENST00000322344 PHF20Q9BVI0 1012 aa25.64■■□□□ 1.69
PNKP-201ENST00000322344 HSD3B7Q9H2F3 369 aa25.64■■□□□ 1.69
PNKP-201ENST00000322344 ATP8A2Q9NTI2 1148 aa25.64■■□□□ 1.69
PNKP-201ENST00000322344 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.64■■□□□ 1.69
PNKP-201ENST00000322344 DLEC1Q9Y238 1755 aa25.63■■□□□ 1.69
PNKP-201ENST00000322344 KIF2AO00139 706 aaPredicted RBP25.63■■□□□ 1.69
PNKP-201ENST00000322344 BMP15O95972 392 aa25.63■■□□□ 1.69
PNKP-201ENST00000322344 SFPQP23246 707 aaKnown RBP eCLIP25.63■■□□□ 1.69
PNKP-201ENST00000322344 MECOMQ03112 1051 aa25.63■■□□□ 1.69
PNKP-201ENST00000322344 SYCP1Q15431 976 aa25.63■■□□□ 1.69
PNKP-201ENST00000322344 PKN1Q16512 942 aa25.63■■□□□ 1.69
PNKP-201ENST00000322344 CCAR2Q8N163 923 aaKnown RBP25.63■■□□□ 1.69
PNKP-201ENST00000322344 ZNF710Q8N1W2 664 aa25.63■■□□□ 1.69
PNKP-201ENST00000322344 OXER1Q8TDS5 423 aa25.63■■□□□ 1.69
PNKP-201ENST00000322344 DACH1Q9UI36 760 aa25.63■■□□□ 1.69
PNKP-201ENST00000322344 ZPR1O75312 459 aa25.63■■□□□ 1.69
PNKP-201ENST00000322344 TROAPQ12815 778 aa25.63■■□□□ 1.69
PNKP-201ENST00000322344 POSTNQ15063 836 aa25.63■■□□□ 1.69
PNKP-201ENST00000322344 PTPN14Q15678 1187 aa25.63■■□□□ 1.69
PNKP-201ENST00000322344 NT5DC1Q5TFE4 455 aa25.63■■□□□ 1.69
PNKP-201ENST00000322344 TPTE2Q6XPS3 522 aa25.63■■□□□ 1.69
PNKP-201ENST00000322344 FOXP4Q8IVH2 680 aaPredicted RBP25.63■■□□□ 1.69
PNKP-201ENST00000322344 BRMS1Q9HCU9 246 aa25.63■■□□□ 1.69
PNKP-201ENST00000322344 CABP5Q9NP86 173 aa25.63■■□□□ 1.69
PNKP-201ENST00000322344 TAF1P21675 1872 aa25.62■■□□□ 1.69
PNKP-201ENST00000322344 CYP2D7A0A087X1C5 515 aa25.62■■□□□ 1.69
PNKP-201ENST00000322344 TRIM75PA6NK02 468 aa25.62■■□□□ 1.69
PNKP-201ENST00000322344 USP17L12C9JPN9 530 aa25.62■■□□□ 1.69
PNKP-201ENST00000322344 USP17L21D6R901 530 aa25.62■■□□□ 1.69
PNKP-201ENST00000322344 NT5C2P49902 561 aa25.62■■□□□ 1.69
PNKP-201ENST00000322344 TRIML1Q8N9V2 468 aa25.62■■□□□ 1.69
PNKP-201ENST00000322344 CCDC34Q96HJ3 373 aa25.62■■□□□ 1.69
PNKP-201ENST00000322344 SBK1Q52WX2 424 aa25.61■■□□□ 1.69
PNKP-201ENST00000322344 CCDC112Q8NEF3 446 aa25.61■■□□□ 1.69
PNKP-201ENST00000322344 TSC1Q92574 1164 aa25.61■■□□□ 1.69
PNKP-201ENST00000322344 ARPP21Q9UBL0 812 aaPredicted RBP25.61■■□□□ 1.69
PNKP-201ENST00000322344 MAST2Q6P0Q8 1798 aa25.61■■□□□ 1.69
PNKP-201ENST00000322344 SMIM22K7EJ46 135 aa25.61■■□□□ 1.69
PNKP-201ENST00000322344 POLR2DO15514 142 aaKnown RBP25.61■■□□□ 1.69
PNKP-201ENST00000322344 TMTC3Q6ZXV5 915 aa25.61■■□□□ 1.69
PNKP-201ENST00000322344 MLKLQ8NB16 471 aa25.61■■□□□ 1.69
PNKP-201ENST00000322344 SERPINC1P01008 464 aa25.6■■□□□ 1.69
PNKP-201ENST00000322344 UBASH3AP57075 661 aa25.6■■□□□ 1.69
PNKP-201ENST00000322344 SPECC1Q5M775 1068 aa25.6■■□□□ 1.69
PNKP-201ENST00000322344 ARMCX5Q6P1M9 558 aa25.6■■□□□ 1.69
PNKP-201ENST00000322344 DCP1AQ9NPI6 582 aaPredicted RBP25.6■■□□□ 1.69
PNKP-201ENST00000322344 AATFQ9NY61 560 aaKnown RBP eCLIP25.6■■□□□ 1.69
PNKP-201ENST00000322344 VPS54Q9P1Q0 977 aa25.6■■□□□ 1.69
PNKP-201ENST00000322344 USP27XA6NNY8 438 aa25.59■■□□□ 1.69
PNKP-201ENST00000322344 PRDM1O75626 825 aa25.59■■□□□ 1.69
PNKP-201ENST00000322344 KLRK1P26718 216 aa25.59■■□□□ 1.69
PNKP-201ENST00000322344 KCNQ4P56696 695 aa25.59■■□□□ 1.69
PNKP-201ENST00000322344 GRIN1Q05586 938 aa25.59■■□□□ 1.69
PNKP-201ENST00000322344 SPTY2D1Q68D10 685 aaPredicted RBP25.59■■□□□ 1.69
PNKP-201ENST00000322344 SMARCE1Q969G3 411 aa25.59■■□□□ 1.69
PNKP-201ENST00000322344 SERTAD1Q9UHV2 236 aa25.59■■□□□ 1.69
PNKP-201ENST00000322344 MAN1B1Q9UKM7 699 aa25.59■■□□□ 1.69
PNKP-201ENST00000322344 V9GY48 417 aaPredicted RBP25.59■■□□□ 1.69
PNKP-201ENST00000322344 ATP1A3P13637 1013 aa25.59■■□□□ 1.69
PNKP-201ENST00000322344 SARSP49591 514 aaKnown RBP25.59■■□□□ 1.69
PNKP-201ENST00000322344 CTCFLQ8NI51 663 aaPredicted RBP25.59■■□□□ 1.69
PNKP-201ENST00000322344 UBE2Q2Q8WVN8 375 aa25.59■■□□□ 1.69
PNKP-201ENST00000322344 SRP68Q9UHB9 627 aaKnown RBP25.59■■□□□ 1.69
PNKP-201ENST00000322344 MYH6P13533 1939 aa25.58■■□□□ 1.69
PNKP-201ENST00000322344 PSDA5PKW4 1024 aaPredicted RBP25.58■■□□□ 1.69
PNKP-201ENST00000322344 TOM1O60784 492 aa25.58■■□□□ 1.69
PNKP-201ENST00000322344 PLEKHA8P1O95397 391 aa25.58■■□□□ 1.69
PNKP-201ENST00000322344 SHISA4Q96DD7 197 aa25.58■■□□□ 1.69
PNKP-201ENST00000322344 BAZ2AQ9UIF9 1905 aaKnown RBP25.58■■□□□ 1.69
PNKP-201ENST00000322344 LAMB1P07942 1786 aa25.58■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms