RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 BCAP31P51572 246 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 RBM5P52756 815 aaKnown RBP eCLIP8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 USF2Q15853 346 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 ZNF394Q53GI3 561 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 LARP1BQ659C4 914 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 SRRM1Q8IYB3 904 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 CNTROBQ8N137 903 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 DPF1Q92782 380 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 KIF9Q9HAQ2 790 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 ASIC3Q9UHC3 531 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 RWDD3Q9Y3V2 267 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 GSTA4O15217 222 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 SEMA3DO95025 777 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 ATP5DP30049 168 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 PSMD7P51665 324 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 LETM2Q2VYF4 491 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 TBC1D1Q86TI0 1168 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 EXOC8Q8IYI6 725 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 VAV3Q9UKW4 847 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 KTN1Q86UP2 1357 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 ABCC8Q09428 1581 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 APOA1P02647 267 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 STX17P56962 302 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 CAPRIN1Q14444 709 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 TAF12Q16514 161 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 RTL3Q8N8U3 475 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 CCHCR1Q8TD31 782 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 EVI5LQ96CN4 794 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 LNPKQ9C0E8 428 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 STK26Q9P289 416 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 PAXBP1Q9Y5B6 917 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 SOGA1O94964 1423 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 RASGRF2O14827 1237 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 KRT26Q7Z3Y9 468 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 MTRF1LQ9UGC7 380 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 KIF23Q02241 960 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 ANKRD1Q15327 319 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 PARP10Q53GL7 1025 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 EFCAB13Q8IY85 973 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 STAG2Q8N3U4 1231 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 ANKRD42Q8N9B4 389 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 SOX13Q9UN79 622 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 EID1Q9Y6B2 187 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 WASHC2CQ9Y4E1 1318 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 H0Y626 953 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 GUCY1B2O75343 617 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 PAMP19021 973 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 RRP1P56182 461 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 ARID5AQ03989 594 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 OCLNQ16625 522 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 PPP1R14DQ9NXH3 145 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 SYCE1LA8MT33 242 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 SNUPNO95149 360 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 KRT76Q01546 638 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 FBXO41Q8TF61 875 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 KIFC2Q96AC6 838 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 OLFM1Q99784 485 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 XPAP23025 273 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 MTA1Q13330 715 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 OLFML1Q6UWY5 402 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 MDM1Q8TC05 714 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 PHKBQ93100 1093 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 HDAC11Q96DB2 347 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 CDC5LQ99459 802 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 INTUQ9ULD6 942 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 ZNF148Q9UQR1 794 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 MAFKO60675 156 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 SCGNO76038 276 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 DDX58O95786 925 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 GJA1P17302 382 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 ITGAXP20702 1163 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 CETN1Q12798 172 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 TAF11Q15544 211 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 SDE2Q6IQ49 451 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 TBC1D5Q92609 795 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 HOMER3Q9NSC5 361 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 MBD2Q9UBB5 411 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 NINLQ9Y2I6 1382 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 GOLGA8JA6NMD2 632 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 GOLGA8KD6RF30 607 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 HAUS5O94927 633 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 DEPDC1Q5TB30 811 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 TMC5Q6UXY8 1006 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 TAGAPQ8N103 731 aa8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 JPH2Q9BR39 696 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-201ENST00000313860 BIN1O00499 593 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 MSL3P1P0C860 447 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 ABRQ12979 859 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 TRIM14Q14142 442 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 GSDMAQ96QA5 445 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 SEPT3Q9UH03 358 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 MLH1P40692 756 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 RAD51AP2Q09MP3 1159 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 HORMAD1Q86X24 394 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 CATSPER3Q86XQ3 398 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 B3GALT6Q96L58 329 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 RAD21L1Q9H4I0 556 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 FAM204AQ9H8W3 233 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 OGFRQ9NZT2 677 aa8.41□□□□□ -1.06
LIMCH1-201ENST00000313860 FBXL5Q9UKA1 691 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms