RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 SRGNP10124 158 aa12.44□□□□□ -0.42
LSM3-201ENST00000306024 ETF1P62495 437 aaKnown RBP12.44□□□□□ -0.42
LSM3-201ENST00000306024 GSTO1P78417 241 aa12.44□□□□□ -0.42
LSM3-201ENST00000306024 ORC3Q9UBD5 711 aaPredicted RBP12.44□□□□□ -0.42
LSM3-201ENST00000306024 ADAM21Q9UKJ8 722 aa12.44□□□□□ -0.42
LSM3-201ENST00000306024 ERICH2A1L162 156 aa12.43□□□□□ -0.42
LSM3-201ENST00000306024 SLC3A2P08195 630 aaKnown RBP12.43□□□□□ -0.42
LSM3-201ENST00000306024 HSPA4P34932 840 aa12.43□□□□□ -0.42
LSM3-201ENST00000306024 ZNF589Q86UQ0 364 aaPredicted RBP12.43□□□□□ -0.42
LSM3-201ENST00000306024 SP8Q8IXZ3 490 aa12.43□□□□□ -0.42
LSM3-201ENST00000306024 ERCC4Q92889 916 aaPredicted RBP12.43□□□□□ -0.42
LSM3-201ENST00000306024 PDGFDQ9GZP0 370 aaPredicted RBP12.43□□□□□ -0.42
LSM3-201ENST00000306024 LCMT1Q9UIC8 334 aa12.43□□□□□ -0.42
LSM3-201ENST00000306024 CALRP27797 417 aaKnown RBP12.43□□□□□ -0.42
LSM3-201ENST00000306024 SYNE3Q6ZMZ3 975 aa12.43□□□□□ -0.42
LSM3-201ENST00000306024 LEO1Q8WVC0 666 aaPredicted RBP12.43□□□□□ -0.42
LSM3-201ENST00000306024 EXOC4Q96A65 974 aa12.43□□□□□ -0.42
LSM3-201ENST00000306024 PPP1R13BQ96KQ4 1090 aa12.43□□□□□ -0.42
LSM3-201ENST00000306024 CRNKL1Q9BZJ0 848 aaKnown RBP12.43□□□□□ -0.42
LSM3-201ENST00000306024 RTL9Q8NET4 1388 aa12.43□□□□□ -0.42
LSM3-201ENST00000306024 GUCY2CP25092 1073 aa12.43□□□□□ -0.42
LSM3-201ENST00000306024 ZSCAN29Q8IWY8 852 aaPredicted RBP12.43□□□□□ -0.42
LSM3-201ENST00000306024 JDP2Q8WYK2 163 aa12.43□□□□□ -0.42
LSM3-201ENST00000306024 DBNDD1Q9H9R9 158 aa12.43□□□□□ -0.42
LSM3-201ENST00000306024 ATP6V0A2Q9Y487 856 aa12.43□□□□□ -0.42
LSM3-201ENST00000306024 WNK3Q9BYP7 1800 aa12.43□□□□□ -0.42
LSM3-201ENST00000306024 CHGBP05060 677 aa12.42□□□□□ -0.42
LSM3-201ENST00000306024 MAGEA9P43362 315 aa12.42□□□□□ -0.42
LSM3-201ENST00000306024 ZMYM1Q5SVZ6 1142 aa12.42□□□□□ -0.42
LSM3-201ENST00000306024 SUPT20HQ8NEM7 779 aa12.42□□□□□ -0.42
LSM3-201ENST00000306024 NHSQ6T4R5 1651 aa12.42□□□□□ -0.42
LSM3-201ENST00000306024 A0A087WWV3 80 aa12.42□□□□□ -0.42
LSM3-201ENST00000306024 WTIPA6NIX2 430 aaPredicted RBP12.42□□□□□ -0.42
LSM3-201ENST00000306024 SEMA3EO15041 775 aa12.42□□□□□ -0.42
LSM3-201ENST00000306024 POLR3DP05423 398 aaPredicted RBP12.42□□□□□ -0.42
LSM3-201ENST00000306024 KLRK1P26718 216 aa12.42□□□□□ -0.42
LSM3-201ENST00000306024 CDC25BP30305 580 aa12.42□□□□□ -0.42
LSM3-201ENST00000306024 FSIP1Q8NA03 581 aa12.42□□□□□ -0.42
LSM3-201ENST00000306024 GOLGA1Q92805 767 aa12.42□□□□□ -0.42
LSM3-201ENST00000306024 OSBP2Q969R2 916 aa12.42□□□□□ -0.42
LSM3-201ENST00000306024 EPC1Q9H2F5 836 aa12.42□□□□□ -0.42
LSM3-201ENST00000306024 H2AFXP16104 143 aaPredicted RBP12.42□□□□□ -0.42
LSM3-201ENST00000306024 PPP2R3AQ06190 1150 aa12.42□□□□□ -0.42
LSM3-201ENST00000306024 OLFM4Q6UX06 510 aa12.42□□□□□ -0.42
LSM3-201ENST00000306024 NEK1Q96PY6 1258 aa12.42□□□□□ -0.42
LSM3-201ENST00000306024 AATFQ9NY61 560 aaKnown RBP eCLIP12.42□□□□□ -0.42
LSM3-201ENST00000306024 FGFR2P21802 821 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 ANKRD1Q15327 319 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 TBC1D16Q8TBP0 767 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 CCDC12Q8WUD4 166 aaPredicted RBP12.41□□□□□ -0.42
LSM3-201ENST00000306024 FAM107BQ9H098 131 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 PAPPAQ13219 1627 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 EFCAB8A8MWE9 144 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 CPLX1O14810 134 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 MAST3O60307 1309 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 ARID4AP29374 1257 aaPredicted RBP12.41□□□□□ -0.42
LSM3-201ENST00000306024 ADD2P35612 726 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 NUP98P52948 1817 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 UBE3CQ15386 1083 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 NYAP1Q6ZVC0 841 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 NBPF11Q86T75 865 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 VGLL2Q8N8G2 317 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 TBC1D22AQ8WUA7 517 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 MTFR1LQ9H019 292 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 CD209Q9NNX6 404 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 PIM2Q9P1W9 311 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 RPAP1Q9BWH6 1393 aaPredicted RBP12.41□□□□□ -0.42
LSM3-201ENST00000306024 EIF3CLB5ME19 914 aaKnown RBP12.41□□□□□ -0.42
LSM3-201ENST00000306024 ATP8B1O43520 1251 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 CCDC93Q567U6 631 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 EIF3CQ99613 913 aaKnown RBP12.41□□□□□ -0.42
LSM3-201ENST00000306024 LSG1Q9H089 658 aaKnown RBP12.41□□□□□ -0.42
LSM3-201ENST00000306024 C4BP0C0L5 1744 aa12.41□□□□□ -0.42
LSM3-201ENST00000306024 SLC27A2O14975 620 aa12.4□□□□□ -0.42
LSM3-201ENST00000306024 TOP1P11387 765 aaKnown RBP12.4□□□□□ -0.42
LSM3-201ENST00000306024 C11orf57Q6ZUT1 292 aaPredicted RBP12.4□□□□□ -0.42
LSM3-201ENST00000306024 LRRC2Q9BYS8 371 aa12.4□□□□□ -0.42
LSM3-201ENST00000306024 PUS7LQ9H0K6 701 aaKnown RBP12.4□□□□□ -0.42
LSM3-201ENST00000306024 MTMR7Q9Y216 660 aa12.4□□□□□ -0.42
LSM3-201ENST00000306024 TJP1Q07157 1748 aa12.4□□□□□ -0.42
LSM3-201ENST00000306024 LARGE1O95461 756 aa12.4□□□□□ -0.42
LSM3-201ENST00000306024 HSPD1P10809 573 aaKnown RBP12.4□□□□□ -0.42
LSM3-201ENST00000306024 GNAT2P19087 354 aa12.4□□□□□ -0.42
LSM3-201ENST00000306024 LMOD1P29536 600 aaPredicted RBP12.4□□□□□ -0.42
LSM3-201ENST00000306024 DALRD3Q5D0E6 543 aaKnown RBP12.4□□□□□ -0.42
LSM3-201ENST00000306024 CC2D2BQ6DHV5 1058 aa12.4□□□□□ -0.42
LSM3-201ENST00000306024 ISM2Q6H9L7 571 aa12.4□□□□□ -0.42
LSM3-201ENST00000306024 TXNRD3Q86VQ6 643 aa12.4□□□□□ -0.42
LSM3-201ENST00000306024 GPR161Q8N6U8 529 aaKnown RBP12.4□□□□□ -0.42
LSM3-201ENST00000306024 ZNF396Q96N95 335 aaPredicted RBP12.4□□□□□ -0.42
LSM3-201ENST00000306024 DPEP1P16444 411 aa12.4□□□□□ -0.42
LSM3-201ENST00000306024 RASEFQ8IZ41 740 aa12.4□□□□□ -0.42
LSM3-201ENST00000306024 CENPHQ9H3R5 247 aa12.4□□□□□ -0.42
LSM3-201ENST00000306024 TMOD2Q9NZR1 351 aa12.4□□□□□ -0.42
LSM3-201ENST00000306024 M0R2C6 588 aa12.39□□□□□ -0.43
LSM3-201ENST00000306024 KIAA0754O94854 1291 aa12.39□□□□□ -0.43
LSM3-201ENST00000306024 PRDX5P30044 214 aa12.39□□□□□ -0.43
LSM3-201ENST00000306024 HOXA10P31260 410 aaPredicted RBP12.39□□□□□ -0.43
LSM3-201ENST00000306024 CPLX2Q6PUV4 134 aaKnown RBP12.39□□□□□ -0.43
LSM3-201ENST00000306024 OGFOD1Q8N543 542 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms