RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 CIB2O75838 187 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 RAB15P59190 212 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 RBM10P98175 930 aaKnown RBP5.82□□□□□ -1.48
SCN1A-201ENST00000303395 TSGA10IPQ3SY00 556 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 SPDYCQ5MJ68 293 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 WAPLQ7Z5K2 1190 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 GSDMBQ8TAX9 411 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 DRC3Q9H069 523 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 RRP7AQ9Y3A4 280 aaKnown RBP5.82□□□□□ -1.48
SCN1A-201ENST00000303395 SLC12A7Q9Y666 1083 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 CDC42BPBQ9Y5S2 1711 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 CCDC194A0A1B0GVG4 234 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 HIP1RO75146 1068 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 CAV1Q03135 178 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 CFAP70Q5T0N1 1121 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 ESR2Q92731 530 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 KIF2CQ99661 725 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 CTTNBP2NLQ9P2B4 639 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 ZNF652Q9Y2D9 606 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 TACC3Q9Y6A5 838 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 GRID2IPA4D2P6 1211 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 H0YCG3 227 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 WDR46O15213 610 aaKnown RBP5.82□□□□□ -1.48
SCN1A-201ENST00000303395 PDE4BQ07343 736 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 ZNF579Q8NAF0 562 aaKnown RBP5.82□□□□□ -1.48
SCN1A-201ENST00000303395 TRIM11Q96F44 468 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 AK8Q96MA6 479 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 SENP1Q9P0U3 644 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 TNKSO95271 1327 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 NCBP1Q09161 790 aaKnown RBP5.82□□□□□ -1.48
SCN1A-201ENST00000303395 SRGAP1Q7Z6B7 1085 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 ZMAT2Q96NC0 199 aaKnown RBP5.82□□□□□ -1.48
SCN1A-201ENST00000303395 MXD3Q9BW11 206 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 NUF2Q9BZD4 464 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 NDE1Q9NXR1 346 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 ANKARQ7Z5J8 1434 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 GIPC1O14908 333 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 DNM2P50570 870 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 UBL4BQ8N7F7 174 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 PHACTR1Q9C0D0 580 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 MMRN2Q9H8L6 949 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 E9PCH4 1651 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 FRMD3A2A2Y4 597 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 PPP6R2O75170 966 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 IFIT1P09914 478 aaKnown RBP5.82□□□□□ -1.48
SCN1A-201ENST00000303395 RCSD1Q6JBY9 416 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 DACT1Q9NYF0 836 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 CLTCL1P53675 1640 aa5.82□□□□□ -1.48
SCN1A-201ENST00000303395 MYO18AQ92614 2054 aaKnown RBP5.82□□□□□ -1.48
SCN1A-201ENST00000303395 GFAPP14136 432 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 INPP1P49441 399 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 CEP85Q6P2H3 762 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 SH3GL3Q99963 347 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 JRKLQ9Y4A0 524 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 EFCAB6Q5THR3 1501 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 ANKRD12Q6UB98 2062 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 H7C1D1 291 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 CASQ2O14958 399 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-201ENST00000303395 TTC39AQ5SRH9 613 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 TEX9Q8N6V9 391 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 AIDAQ96BJ3 306 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 ZNF830Q96NB3 372 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-201ENST00000303395 CNPY3Q9BT09 278 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 MAGI3Q5TCQ9 1506 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 WASLO00401 505 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-201ENST00000303395 DKC1O60832 514 aaKnown RBP eCLIP5.81□□□□□ -1.486e-8■■■■■ 53.6
SCN1A-201ENST00000303395 DEXIO95424 95 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 ATP2B1P20020 1258 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 BSDC1Q9NW68 430 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-201ENST00000303395 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.81□□□□□ -1.483e-7■■■□□ 19
SCN1A-201ENST00000303395 GSTA2P09210 222 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 UBA7P41226 1012 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 SERPINB4P48594 390 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 MTX1Q13505 466 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 GEN1Q17RS7 908 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 CPLX4Q7Z7G2 160 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 FBXO18Q8NFZ0 1043 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 ANKRD7Q92527 254 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 EIF2AQ9BY44 585 aaKnown RBP5.81□□□□□ -1.48
SCN1A-201ENST00000303395 TMEM51Q9NW97 253 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 RTEL1Q9NZ71 1219 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 ZBTB7BO15156 539 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-201ENST00000303395 MCM6Q14566 821 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 KRT39Q6A163 491 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 C8orf74Q6P047 294 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 KSR2Q6VAB6 950 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 PPP1R21Q6ZMI0 780 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 PPP4R3CPQ6ZMV5 832 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 APBB2Q92870 758 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 HYOU1Q9Y4L1 999 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 MAP3K4Q9Y6R4 1608 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 ARHGEF25Q86VW2 580 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 STAMBPL1Q96FJ0 436 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 CHL1O00533 1208 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 SKIP12755 728 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 HOXB6P17509 224 aaKnown RBP5.81□□□□□ -1.48
SCN1A-201ENST00000303395 YY1P25490 414 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 CLCN2P51788 898 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 LRCH2Q5VUJ6 765 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 CATSPER1Q8NEC5 780 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms