RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 AMPD2Q01433 879 aa15.27■□□□□ 0.03
SKA3-201ENST00000298260 EZH2Q15910 746 aaKnown RBP15.27■□□□□ 0.03
SKA3-201ENST00000298260 FAM76AQ8TAV0 307 aa15.27■□□□□ 0.03
SKA3-201ENST00000298260 COG1Q8WTW3 980 aa15.27■□□□□ 0.03
SKA3-201ENST00000298260 GBP3Q9H0R5 595 aa15.27■□□□□ 0.03
SKA3-201ENST00000298260 ACBD3Q9H3P7 528 aa15.27■□□□□ 0.03
SKA3-201ENST00000298260 SH3TC1Q8TE82 1336 aa15.27■□□□□ 0.03
SKA3-201ENST00000298260 USP14P54578 494 aa15.26■□□□□ 0.03
SKA3-201ENST00000298260 ZMYM1Q5SVZ6 1142 aa15.26■□□□□ 0.03
SKA3-201ENST00000298260 ENOX1Q8TC92 643 aaKnown RBP15.26■□□□□ 0.03
SKA3-201ENST00000298260 XAGE3Q8WTP9 111 aa15.26■□□□□ 0.03
SKA3-201ENST00000298260 CRACR2AQ9BSW2 395 aa15.26■□□□□ 0.03
SKA3-201ENST00000298260 SELENOOQ9BVL4 669 aa15.26■□□□□ 0.03
SKA3-201ENST00000298260 VPS16Q9H269 839 aa15.26■□□□□ 0.03
SKA3-201ENST00000298260 BABAM1Q9NWV8 329 aa15.26■□□□□ 0.03
SKA3-201ENST00000298260 NWD1Q149M9 1564 aa15.26■□□□□ 0.03
SKA3-201ENST00000298260 FGAP02671 866 aa15.26■□□□□ 0.03
SKA3-201ENST00000298260 ATP1A2P50993 1020 aa15.26■□□□□ 0.03
SKA3-201ENST00000298260 PIP4K2BP78356 416 aa15.26■□□□□ 0.03
SKA3-201ENST00000298260 COPS6Q7L5N1 327 aa15.26■□□□□ 0.03
SKA3-201ENST00000298260 DHX37Q8IY37 1157 aaKnown RBP15.26■□□□□ 0.03
SKA3-201ENST00000298260 HDAC7Q8WUI4 952 aa15.26■□□□□ 0.03
SKA3-201ENST00000298260 KCNJ14Q9UNX9 436 aa15.26■□□□□ 0.03
SKA3-201ENST00000298260 AARSP49588 968 aaKnown RBP eCLIP15.25■□□□□ 0.03
SKA3-201ENST00000298260 PDCLQ13371 301 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 PDIA6Q15084 440 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 WHAMMP3Q1A5X7 153 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 KCTD16Q68DU8 428 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 GPIHBP1Q8IV16 184 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 CMTR1Q8N1G2 835 aaKnown RBP15.25■□□□□ 0.03
SKA3-201ENST00000298260 SH2D3CQ8N5H7 860 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 ZNF594Q96JF6 807 aaPredicted RBP15.25■□□□□ 0.03
SKA3-201ENST00000298260 GRIN2DO15399 1336 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 BTBD18B2RXH4 712 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 H0YHG0 523 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 ATF3P18847 181 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 MORC3Q14149 939 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 WDR93Q6P2C0 686 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 PI16Q6UXB8 463 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 DONSONQ9NYP3 566 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 PDE2AO00408 941 aaPredicted RBP15.25■□□□□ 0.03
SKA3-201ENST00000298260 PPARAQ07869 468 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 C2orf54Q08AI8 447 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 MAP9Q49MG5 647 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 KIRREL3Q8IZU9 778 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 NUP88Q99567 741 aaPredicted RBP15.25■□□□□ 0.03
SKA3-201ENST00000298260 CAPS2Q9BXY5 557 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 COPRSQ9NQ92 184 aa15.25■□□□□ 0.03
SKA3-201ENST00000298260 ADD3Q9UEY8 706 aaKnown RBP15.25■□□□□ 0.03
SKA3-201ENST00000298260 REXO2Q9Y3B8 237 aaKnown RBP15.25■□□□□ 0.03
SKA3-201ENST00000298260 ZEB2O60315 1214 aa15.24■□□□□ 0.03
SKA3-201ENST00000298260 PPP6R2O75170 966 aa15.24■□□□□ 0.03
SKA3-201ENST00000298260 DPYDQ12882 1025 aa15.24■□□□□ 0.03
SKA3-201ENST00000298260 JMYQ8N9B5 988 aa15.24■□□□□ 0.03
SKA3-201ENST00000298260 HOXB7P09629 217 aa15.24■□□□□ 0.03
SKA3-201ENST00000298260 GUCY1A2P33402 732 aa15.24■□□□□ 0.03
SKA3-201ENST00000298260 MATR3P43243 847 aaKnown RBP eCLIP15.24■□□□□ 0.03
SKA3-201ENST00000298260 ACTN3Q08043 901 aaPredicted RBP15.24■□□□□ 0.03
SKA3-201ENST00000298260 KCTD19Q17RG1 926 aaPredicted RBP15.24■□□□□ 0.03
SKA3-201ENST00000298260 LMBR1LQ6UX01 489 aa15.24■□□□□ 0.03
SKA3-201ENST00000298260 MB21D2Q8IYB1 491 aaPredicted RBP15.24■□□□□ 0.03
SKA3-201ENST00000298260 MSL3Q8N5Y2 521 aaKnown RBP15.24■□□□□ 0.03
SKA3-201ENST00000298260 ARL8AQ96BM9 186 aa15.24■□□□□ 0.03
SKA3-201ENST00000298260 CENPHQ9H3R5 247 aa15.24■□□□□ 0.03
SKA3-201ENST00000298260 SMARCAL1Q9NZC9 954 aa15.24■□□□□ 0.03
SKA3-201ENST00000298260 UTYO14607 1347 aa15.24■□□□□ 0.03
SKA3-201ENST00000298260 FRMD3A2A2Y4 597 aa15.23■□□□□ 0.03
SKA3-201ENST00000298260 GOLGA6BA6NDN3 693 aa15.23■□□□□ 0.03
SKA3-201ENST00000298260 TOB1P50616 345 aaPredicted RBP15.23■□□□□ 0.03
SKA3-201ENST00000298260 SLC7A5Q01650 507 aa15.23■□□□□ 0.03
SKA3-201ENST00000298260 KRI1Q8N9T8 703 aaKnown RBP15.23■□□□□ 0.03
SKA3-201ENST00000298260 HELLSQ9NRZ9 838 aa15.23■□□□□ 0.03
SKA3-201ENST00000298260 MAPK8IP1Q9UQF2 711 aa15.23■□□□□ 0.03
SKA3-201ENST00000298260 DUSP10Q9Y6W6 482 aa15.23■□□□□ 0.03
SKA3-201ENST00000298260 A0A087X0B3 334 aa15.23■□□□□ 0.03
SKA3-201ENST00000298260 SHOX2O60902 331 aaPredicted RBP15.23■□□□□ 0.03
SKA3-201ENST00000298260 ZC3H6P61129 1189 aaKnown RBP15.23■□□□□ 0.03
SKA3-201ENST00000298260 TRDNQ13061 729 aa15.23■□□□□ 0.03
SKA3-201ENST00000298260 SND1Q7KZF4 910 aaKnown RBP eCLIP15.23■□□□□ 0.03
SKA3-201ENST00000298260 MLKLQ8NB16 471 aa15.23■□□□□ 0.03
SKA3-201ENST00000298260 EEF2KMTQ96G04 330 aa15.23■□□□□ 0.03
SKA3-201ENST00000298260 PSMB7Q99436 277 aa15.23■□□□□ 0.03
SKA3-201ENST00000298260 PCDHB6Q9Y5E3 794 aa15.23■□□□□ 0.03
SKA3-201ENST00000298260 LMTK3Q96Q04 1460 aa15.23■□□□□ 0.03
SKA3-201ENST00000298260 CLGNO14967 610 aa15.22■□□□□ 0.03
SKA3-201ENST00000298260 RNF113AO15541 343 aaKnown RBP15.22■□□□□ 0.03
SKA3-201ENST00000298260 RANBP6O60518 1105 aaKnown RBP15.22■□□□□ 0.03
SKA3-201ENST00000298260 DDX58O95786 925 aaKnown RBP15.22■□□□□ 0.03
SKA3-201ENST00000298260 IFIT1P09914 478 aaKnown RBP15.22■□□□□ 0.03
SKA3-201ENST00000298260 NEXNQ0ZGT2 675 aa15.22■□□□□ 0.03
SKA3-201ENST00000298260 NR5A1Q13285 461 aa15.22■□□□□ 0.03
SKA3-201ENST00000298260 LRRC24Q50LG9 513 aa15.22■□□□□ 0.03
SKA3-201ENST00000298260 RALYLQ86SE5 291 aaKnown RBP15.22■□□□□ 0.03
SKA3-201ENST00000298260 FAM107BQ9H098 131 aa15.22■□□□□ 0.03
SKA3-201ENST00000298260 PUS7LQ9H0K6 701 aaKnown RBP15.22■□□□□ 0.03
SKA3-201ENST00000298260 TAB2Q9NYJ8 693 aa15.22■□□□□ 0.03
SKA3-201ENST00000298260 PBX1P40424 430 aa15.22■□□□□ 0.03
SKA3-201ENST00000298260 METAP2P50579 478 aaKnown RBP eCLIP15.22■□□□□ 0.03
SKA3-201ENST00000298260 PLCD1P51178 756 aa15.22■□□□□ 0.03
SKA3-201ENST00000298260 CYB5R4Q7L1T6 521 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms