RNA–Protein interactions for RNA: ENST00000279550.11

YBX3-202, Transcript of Y-box binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene YBX3, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-202ENST00000279550 USP17L21D6R901 530 aa24.43■■□□□ 1.5
YBX3-202ENST00000279550 CIAPIN1Q6FI81 312 aa24.43■■□□□ 1.5
YBX3-202ENST00000279550 APOBEC3HQ6NTF7 200 aaKnown RBP24.43■■□□□ 1.5
YBX3-202ENST00000279550 TEX11Q8IYF3 940 aa24.43■■□□□ 1.5
YBX3-202ENST00000279550 TGFBRAP1Q8WUH2 860 aa24.43■■□□□ 1.5
YBX3-202ENST00000279550 C8orf76Q96K31 380 aa24.43■■□□□ 1.5
YBX3-202ENST00000279550 LAMB1P07942 1786 aa24.43■■□□□ 1.5
YBX3-202ENST00000279550 ADAMTSL1Q8N6G6 1762 aa24.42■■□□□ 1.5
YBX3-202ENST00000279550 CCDC69A6NI79 296 aa24.42■■□□□ 1.5
YBX3-202ENST00000279550 CYP2D6P10635 497 aa24.42■■□□□ 1.5
YBX3-202ENST00000279550 WTAPQ15007 396 aa24.42■■□□□ 1.5
YBX3-202ENST00000279550 NTRK3Q16288 839 aa24.42■■□□□ 1.5
YBX3-202ENST00000279550 AGBL3Q8NEM8 1001 aa24.42■■□□□ 1.5
YBX3-202ENST00000279550 FTOQ9C0B1 505 aaKnown RBP eCLIP24.42■■□□□ 1.5
YBX3-202ENST00000279550 ZBTB12Q9Y330 459 aaPredicted RBP24.42■■□□□ 1.5
YBX3-202ENST00000279550 FZD9O00144 591 aa24.41■■□□□ 1.5
YBX3-202ENST00000279550 RANBP6O60518 1105 aaKnown RBP24.41■■□□□ 1.5
YBX3-202ENST00000279550 YBX3P16989 372 aaKnown RBP eCLIP24.41■■□□□ 1.51e-6■■□□□ 13
YBX3-202ENST00000279550 AIFM3Q96NN9 605 aa24.41■■□□□ 1.5
YBX3-202ENST00000279550 SLC12A7Q9Y666 1083 aa24.41■■□□□ 1.5
YBX3-202ENST00000279550 NID2Q14112 1375 aa24.41■■□□□ 1.5
YBX3-202ENST00000279550 RBM5P52756 815 aaKnown RBP eCLIP24.41■■□□□ 1.5
YBX3-202ENST00000279550 TNIP1Q15025 636 aa24.41■■□□□ 1.5
YBX3-202ENST00000279550 PHKBQ93100 1093 aa24.41■■□□□ 1.5
YBX3-202ENST00000279550 PGBD1Q96JS3 809 aa24.41■■□□□ 1.5
YBX3-202ENST00000279550 MTA3Q9BTC8 594 aa24.41■■□□□ 1.5
YBX3-202ENST00000279550 ARPP21Q9UBL0 812 aaPredicted RBP24.41■■□□□ 1.5
YBX3-202ENST00000279550 PRDM1O75626 825 aa24.4■■□□□ 1.5
YBX3-202ENST00000279550 FGRP09769 529 aa24.4■■□□□ 1.5
YBX3-202ENST00000279550 LIG1P18858 919 aa24.4■■□□□ 1.5
YBX3-202ENST00000279550 LMNB1P20700 586 aa24.4■■□□□ 1.5
YBX3-202ENST00000279550 SEC23AQ15436 765 aa24.4■■□□□ 1.5
YBX3-202ENST00000279550 FBXO18Q8NFZ0 1043 aa24.4■■□□□ 1.5
YBX3-202ENST00000279550 ESR2Q92731 530 aa24.4■■□□□ 1.5
YBX3-202ENST00000279550 MCM9Q9NXL9 1143 aa24.4■■□□□ 1.5
YBX3-202ENST00000279550 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.4■■□□□ 1.5
YBX3-202ENST00000279550 NASPP49321 788 aaPredicted RBP24.39■■□□□ 1.5
YBX3-202ENST00000279550 SART3Q15020 963 aaKnown RBP24.39■■□□□ 1.5
YBX3-202ENST00000279550 SBK1Q52WX2 424 aa24.39■■□□□ 1.5
YBX3-202ENST00000279550 OGFOD1Q8N543 542 aa24.39■■□□□ 1.5
YBX3-202ENST00000279550 PCDHAC2Q9Y5I4 1007 aa24.39■■□□□ 1.5
YBX3-202ENST00000279550 CEBPZQ03701 1054 aaKnown RBP24.38■■□□□ 1.49
YBX3-202ENST00000279550 CDC42EP5Q6NZY7 148 aa24.38■■□□□ 1.49
YBX3-202ENST00000279550 MAPKAPK5Q8IW41 473 aa24.38■■□□□ 1.49
YBX3-202ENST00000279550 USP28Q96RU2 1077 aa24.38■■□□□ 1.49
YBX3-202ENST00000279550 USP40Q9NVE5 1235 aa24.38■■□□□ 1.49
YBX3-202ENST00000279550 HDAC9Q9UKV0 1011 aa24.38■■□□□ 1.49
YBX3-202ENST00000279550 TNKSO95271 1327 aa24.38■■□□□ 1.49
YBX3-202ENST00000279550 FLT1P17948 1338 aa24.38■■□□□ 1.49
YBX3-202ENST00000279550 CDKL5O76039 1030 aa24.38■■□□□ 1.49
YBX3-202ENST00000279550 EIF6P56537 245 aaKnown RBP24.38■■□□□ 1.49
YBX3-202ENST00000279550 CFAP100Q494V2 611 aa24.38■■□□□ 1.49
YBX3-202ENST00000279550 UBAC1Q9BSL1 405 aa24.38■■□□□ 1.49
YBX3-202ENST00000279550 ALG1Q9BT22 464 aa24.38■■□□□ 1.49
YBX3-202ENST00000279550 TSPY26PQ9H489 355 aa24.38■■□□□ 1.49
YBX3-202ENST00000279550 CDK5RAP2Q96SN8 1893 aa24.37■■□□□ 1.49
YBX3-202ENST00000279550 KIF28PB7ZC32 967 aa24.37■■□□□ 1.49
YBX3-202ENST00000279550 UBE2Q2LH0YL09 131 aa24.37■■□□□ 1.49
YBX3-202ENST00000279550 USP17L8P0C7I0 530 aa24.37■■□□□ 1.49
YBX3-202ENST00000279550 RCOR1Q9UKL0 485 aa24.37■■□□□ 1.49
YBX3-202ENST00000279550 ERICH2A1L162 156 aa24.36■■□□□ 1.49
YBX3-202ENST00000279550 WDHD1O75717 1129 aaPredicted RBP24.36■■□□□ 1.49
YBX3-202ENST00000279550 CPLX2Q6PUV4 134 aaKnown RBP24.36■■□□□ 1.49
YBX3-202ENST00000279550 SYNE3Q6ZMZ3 975 aa24.36■■□□□ 1.49
YBX3-202ENST00000279550 ZNF654Q8IZM8 581 aa24.36■■□□□ 1.49
YBX3-202ENST00000279550 CFAP45Q9UL16 551 aa24.36■■□□□ 1.49
YBX3-202ENST00000279550 NAV1Q8NEY1 1877 aa24.36■■□□□ 1.49
YBX3-202ENST00000279550 RTN1Q16799 776 aa24.35■■□□□ 1.49
YBX3-202ENST00000279550 ENAHQ8N8S7 591 aaPredicted RBP24.35■■□□□ 1.49
YBX3-202ENST00000279550 ZNF396Q96N95 335 aaPredicted RBP24.35■■□□□ 1.49
YBX3-202ENST00000279550 ZSCAN10Q96SZ4 725 aaPredicted RBP24.35■■□□□ 1.49
YBX3-202ENST00000279550 FOCADQ5VW36 1801 aa24.35■■□□□ 1.49
YBX3-202ENST00000279550 ORC4O43929 436 aa24.35■■□□□ 1.49
YBX3-202ENST00000279550 RPS12P25398 132 aaKnown RBP24.35■■□□□ 1.49
YBX3-202ENST00000279550 KIF23Q02241 960 aaPredicted RBP24.35■■□□□ 1.49
YBX3-202ENST00000279550 C12orf60Q5U649 245 aa24.35■■□□□ 1.49
YBX3-202ENST00000279550 AMOTL1Q8IY63 956 aa24.35■■□□□ 1.49
YBX3-202ENST00000279550 DDX60LQ5H9U9 1706 aaKnown RBP24.34■■□□□ 1.49
YBX3-202ENST00000279550 FMNL1O95466 1100 aaPredicted RBP24.34■■□□□ 1.49
YBX3-202ENST00000279550 PCP11498 1178 aaKnown RBP24.34■■□□□ 1.49
YBX3-202ENST00000279550 IFNAR1P17181 557 aa24.34■■□□□ 1.49
YBX3-202ENST00000279550 SLC4A8Q2Y0W8 1093 aa24.34■■□□□ 1.49
YBX3-202ENST00000279550 TMTC2Q8N394 836 aa24.34■■□□□ 1.49
YBX3-202ENST00000279550 SLC26A6Q9BXS9 759 aa24.34■■□□□ 1.49
YBX3-202ENST00000279550 DDX4Q9NQI0 724 aaKnown RBP24.34■■□□□ 1.49
YBX3-202ENST00000279550 SAP30BPQ9UHR5 308 aaKnown RBP24.34■■□□□ 1.49
YBX3-202ENST00000279550 STK36Q9NRP7 1315 aa24.34■■□□□ 1.49
YBX3-202ENST00000279550 SPDYE2BA6NHP3 402 aa24.33■■□□□ 1.49
YBX3-202ENST00000279550 SPDYE6P0CI01 402 aa24.33■■□□□ 1.49
YBX3-202ENST00000279550 PICALMQ13492 652 aa24.33■■□□□ 1.49
YBX3-202ENST00000279550 KRT40Q6A162 431 aa24.33■■□□□ 1.49
YBX3-202ENST00000279550 ATL3Q6DD88 541 aa24.33■■□□□ 1.49
YBX3-202ENST00000279550 PRMT6Q96LA8 375 aaPredicted RBP24.33■■□□□ 1.49
YBX3-202ENST00000279550 ZNF541Q9H0D2 1346 aa24.33■■□□□ 1.49
YBX3-202ENST00000279550 GOLGA6L4A6NEF3 574 aa24.32■■□□□ 1.48
YBX3-202ENST00000279550 POLR3DP05423 398 aaPredicted RBP24.32■■□□□ 1.48
YBX3-202ENST00000279550 SSRP1Q08945 709 aaKnown RBP24.32■■□□□ 1.48
YBX3-202ENST00000279550 SBF1O95248 1867 aa24.32■■□□□ 1.48
YBX3-202ENST00000279550 DICER1Q9UPY3 1922 aaKnown RBP24.32■■□□□ 1.48
YBX3-202ENST00000279550 LETM1O95202 739 aaPredicted RBP24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms