RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CATIPQ7Z7H3 387 aa19.06■□□□□ 0.64
VPS54-201ENST00000272322 STAG1Q8WVM7 1258 aa19.06■□□□□ 0.64
VPS54-201ENST00000272322 ZNF652Q9Y2D9 606 aa19.06■□□□□ 0.64
VPS54-201ENST00000272322 DEXIO95424 95 aa19.05■□□□□ 0.64
VPS54-201ENST00000272322 POSTNQ15063 836 aa19.05■□□□□ 0.64
VPS54-201ENST00000272322 PIK3AP1Q6ZUJ8 805 aa19.05■□□□□ 0.64
VPS54-201ENST00000272322 IQCA1Q86XH1 822 aa19.05■□□□□ 0.64
VPS54-201ENST00000272322 ZSCAN10Q96SZ4 725 aaPredicted RBP19.05■□□□□ 0.64
VPS54-201ENST00000272322 DESI2Q9BSY9 194 aa19.05■□□□□ 0.64
VPS54-201ENST00000272322 HSD3B7Q9H2F3 369 aa19.05■□□□□ 0.64
VPS54-201ENST00000272322 SAP30BPQ9UHR5 308 aaKnown RBP19.05■□□□□ 0.64
VPS54-201ENST00000272322 SLIT2O94813 1529 aa19.05■□□□□ 0.64
VPS54-201ENST00000272322 NUP188Q5SRE5 1749 aa19.05■□□□□ 0.64
VPS54-201ENST00000272322 SPATA31A1Q5TZJ5 1347 aa19.05■□□□□ 0.64
VPS54-201ENST00000272322 CUTAO60888 179 aa19.05■□□□□ 0.64
VPS54-201ENST00000272322 SLC44A5Q8NCS7 719 aa19.05■□□□□ 0.64
VPS54-201ENST00000272322 MAP7D2Q96T17 732 aa19.05■□□□□ 0.64
VPS54-201ENST00000272322 RNF41Q9H4P4 317 aaPredicted RBP19.05■□□□□ 0.64
VPS54-201ENST00000272322 RBM6P78332 1123 aaKnown RBP19.05■□□□□ 0.64
VPS54-201ENST00000272322 SMARCE1Q969G3 411 aa19.05■□□□□ 0.64
VPS54-201ENST00000272322 SETDB2Q96T68 719 aa19.05■□□□□ 0.64
VPS54-201ENST00000272322 MAN1B1Q9UKM7 699 aa19.05■□□□□ 0.64
VPS54-201ENST00000272322 ZHX1Q9UKY1 873 aaPredicted RBP19.05■□□□□ 0.64
VPS54-201ENST00000272322 PARP4Q9UKK3 1724 aaKnown RBP19.04■□□□□ 0.64
VPS54-201ENST00000272322 PES1O00541 588 aaKnown RBP19.04■□□□□ 0.64
VPS54-201ENST00000272322 RPS8P62241 208 aaKnown RBP19.04■□□□□ 0.64
VPS54-201ENST00000272322 RASSF8Q8NHQ8 419 aa19.04■□□□□ 0.64
VPS54-201ENST00000272322 LAMB4A4D0S4 1761 aa19.04■□□□□ 0.64
VPS54-201ENST00000272322 AKAP11Q9UKA4 1901 aa19.04■□□□□ 0.64
VPS54-201ENST00000272322 A0A087X0B3 334 aa19.04■□□□□ 0.64
VPS54-201ENST00000272322 EPC1Q9H2F5 836 aa19.04■□□□□ 0.64
VPS54-201ENST00000272322 HPSEQ9Y251 543 aa19.04■□□□□ 0.64
VPS54-201ENST00000272322 PPP6R2O75170 966 aa19.04■□□□□ 0.64
VPS54-201ENST00000272322 GOLGA8HP0CJ92 632 aa19.04■□□□□ 0.64
VPS54-201ENST00000272322 ALX1Q15699 326 aa19.04■□□□□ 0.64
VPS54-201ENST00000272322 CTR9Q6PD62 1173 aa19.04■□□□□ 0.64
VPS54-201ENST00000272322 KIF18AQ8NI77 898 aa19.04■□□□□ 0.64
VPS54-201ENST00000272322 CCDC94Q9BW85 323 aaPredicted RBP19.04■□□□□ 0.64
VPS54-201ENST00000272322 ZSWIM4Q9H7M6 989 aa19.04■□□□□ 0.64
VPS54-201ENST00000272322 STX8Q9UNK0 236 aa19.04■□□□□ 0.64
VPS54-201ENST00000272322 ZPR1O75312 459 aa19.03■□□□□ 0.64
VPS54-201ENST00000272322 CDC25BP30305 580 aa19.03■□□□□ 0.64
VPS54-201ENST00000272322 NLRP5P59047 1200 aa19.03■□□□□ 0.64
VPS54-201ENST00000272322 WASF1Q92558 559 aa19.03■□□□□ 0.64
VPS54-201ENST00000272322 NLRP3Q96P20 1036 aa19.03■□□□□ 0.64
VPS54-201ENST00000272322 UIMC1Q96RL1 719 aa19.03■□□□□ 0.64
VPS54-201ENST00000272322 FBXO2Q9UK22 296 aaPredicted RBP19.03■□□□□ 0.64
VPS54-201ENST00000272322 CCDC196A0A1B0GTZ2 297 aa19.03■□□□□ 0.64
VPS54-201ENST00000272322 GNAT2P19087 354 aa19.03■□□□□ 0.64
VPS54-201ENST00000272322 PPP1R13BQ96KQ4 1090 aa19.03■□□□□ 0.64
VPS54-201ENST00000272322 RIOK1Q9BRS2 568 aaKnown RBP19.03■□□□□ 0.64
VPS54-201ENST00000272322 VAT1LQ9HCJ6 419 aa19.03■□□□□ 0.64
VPS54-201ENST00000272322 TAF1P21675 1872 aa19.03■□□□□ 0.64
VPS54-201ENST00000272322 TRIM75PA6NK02 468 aa19.02■□□□□ 0.64
VPS54-201ENST00000272322 KARSQ15046 597 aaKnown RBP19.02■□□□□ 0.64
VPS54-201ENST00000272322 ERCC6LQ2NKX8 1250 aa19.02■□□□□ 0.64
VPS54-201ENST00000272322 DZIP1Q86YF9 867 aaKnown RBP19.02■□□□□ 0.64
VPS54-201ENST00000272322 URI1O94763 535 aaPredicted RBP19.02■□□□□ 0.63
VPS54-201ENST00000272322 HIBADHP31937 336 aaKnown RBP19.02■□□□□ 0.63
VPS54-201ENST00000272322 DHX8Q14562 1220 aaKnown RBP19.02■□□□□ 0.63
VPS54-201ENST00000272322 GRIK5Q16478 980 aa19.02■□□□□ 0.63
VPS54-201ENST00000272322 RILPL1Q5EBL4 403 aa19.02■□□□□ 0.63
VPS54-201ENST00000272322 GPIHBP1Q8IV16 184 aa19.02■□□□□ 0.63
VPS54-201ENST00000272322 SYMPKQ92797 1274 aaKnown RBP19.02■□□□□ 0.63
VPS54-201ENST00000272322 USP17L3A6NCW0 530 aa19.01■□□□□ 0.63
VPS54-201ENST00000272322 USP17L4A6NCW7 530 aa19.01■□□□□ 0.63
VPS54-201ENST00000272322 GTF2F1P35269 517 aaKnown RBP eCLIP19.01■□□□□ 0.633e-6■■■■□ 19.7
VPS54-201ENST00000272322 GSDMDP57764 484 aa19.01■□□□□ 0.63
VPS54-201ENST00000272322 USP17L1Q7RTZ2 530 aa19.01■□□□□ 0.63
VPS54-201ENST00000272322 NRDCO43847 1150 aa19.01■□□□□ 0.63
VPS54-201ENST00000272322 PTPREP23469 700 aa19.01■□□□□ 0.63
VPS54-201ENST00000272322 USP5P45974 858 aa19.01■□□□□ 0.63
VPS54-201ENST00000272322 PTGDRQ13258 359 aa19.01■□□□□ 0.63
VPS54-201ENST00000272322 SRBD1Q8N5C6 995 aaKnown RBP19.01■□□□□ 0.63
VPS54-201ENST00000272322 CTCFLQ8NI51 663 aaPredicted RBP19.01■□□□□ 0.63
VPS54-201ENST00000272322 CCT6AP40227 531 aaKnown RBP19■□□□□ 0.63
VPS54-201ENST00000272322 PKN1Q16512 942 aa19■□□□□ 0.63
VPS54-201ENST00000272322 IRX2Q9BZI1 471 aaPredicted RBP19■□□□□ 0.63
VPS54-201ENST00000272322 TEX33O43247 280 aa19■□□□□ 0.63
VPS54-201ENST00000272322 MTF1Q14872 753 aa19■□□□□ 0.63
VPS54-201ENST00000272322 TUBE1Q9UJT0 475 aa19■□□□□ 0.63
VPS54-201ENST00000272322 WDR19Q8NEZ3 1342 aa19■□□□□ 0.63
VPS54-201ENST00000272322 XBP1P17861 261 aa18.99■□□□□ 0.63
VPS54-201ENST00000272322 NFIXQ14938 502 aa18.99■□□□□ 0.63
VPS54-201ENST00000272322 SEC23AQ15436 765 aa18.99■□□□□ 0.63
VPS54-201ENST00000272322 STAG2Q8N3U4 1231 aa18.99■□□□□ 0.63
VPS54-201ENST00000272322 PAXBP1Q9Y5B6 917 aa18.99■□□□□ 0.63
VPS54-201ENST00000272322 KRT2P35908 639 aa18.99■□□□□ 0.63
VPS54-201ENST00000272322 INTS13Q9NVM9 706 aa18.99■□□□□ 0.63
VPS54-201ENST00000272322 COL4A1P02462 1669 aa18.99■□□□□ 0.63
VPS54-201ENST00000272322 TFAP4Q01664 338 aa18.99■□□□□ 0.63
VPS54-201ENST00000272322 NSUN4Q96CB9 384 aaKnown RBP18.99■□□□□ 0.63
VPS54-201ENST00000272322 DCP1AQ9NPI6 582 aaPredicted RBP18.99■□□□□ 0.63
VPS54-201ENST00000272322 XIRP1Q702N8 1843 aaKnown RBP18.99■□□□□ 0.63
VPS54-201ENST00000272322 NEMFO60524 1076 aa18.98■□□□□ 0.63
VPS54-201ENST00000272322 MAPKAPK5Q8IW41 473 aa18.98■□□□□ 0.63
VPS54-201ENST00000272322 MKNK2Q9HBH9 465 aa18.98■□□□□ 0.63
VPS54-201ENST00000272322 BSDC1Q9NW68 430 aaPredicted RBP18.98■□□□□ 0.63
VPS54-201ENST00000272322 UBR2Q8IWV8 1755 aa18.98■□□□□ 0.63
VPS54-201ENST00000272322 ERCC3P19447 782 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms