RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 SLC44A5Q8NCS7 719 aa16.49■□□□□ 0.23
SS18-201ENST00000269137 DHX36Q9H2U1 1008 aaKnown RBP16.49■□□□□ 0.23
SS18-201ENST00000269137 FAM217BQ9NTX9 383 aaPredicted RBP16.49■□□□□ 0.23
SS18-201ENST00000269137 FAM198AQ9UFP1 575 aa16.49■□□□□ 0.23
SS18-201ENST00000269137 ZBTB12Q9Y330 459 aaPredicted RBP16.49■□□□□ 0.23
SS18-201ENST00000269137 GOLGA8AA7E2F4 631 aa16.49■□□□□ 0.23
SS18-201ENST00000269137 CDKL5O76039 1030 aa16.49■□□□□ 0.23
SS18-201ENST00000269137 DGKHQ86XP1 1220 aa16.49■□□□□ 0.23
SS18-201ENST00000269137 RAB11FIP4Q86YS3 637 aa16.49■□□□□ 0.23
SS18-201ENST00000269137 FAM184AQ8NB25 1140 aa16.49■□□□□ 0.23
SS18-201ENST00000269137 DDX11Q96FC9 970 aa16.49■□□□□ 0.23
SS18-201ENST00000269137 EHD4Q9H223 541 aa16.49■□□□□ 0.23
SS18-201ENST00000269137 SWAP70Q9UH65 585 aa16.49■□□□□ 0.23
SS18-201ENST00000269137 CCDC196A0A1B0GTZ2 297 aa16.48■□□□□ 0.23
SS18-201ENST00000269137 DDX11L8A8MPP1 907 aa16.48■□□□□ 0.23
SS18-201ENST00000269137 FZD9O00144 591 aa16.48■□□□□ 0.23
SS18-201ENST00000269137 ENTPD3O75355 529 aa16.48■□□□□ 0.23
SS18-201ENST00000269137 HLA-DOAP06340 250 aa16.48■□□□□ 0.23
SS18-201ENST00000269137 TSPY3P0CV98 308 aa16.48■□□□□ 0.23
SS18-201ENST00000269137 TSPY8P0CW00 308 aa16.48■□□□□ 0.23
SS18-201ENST00000269137 RPS12P25398 132 aaKnown RBP16.48■□□□□ 0.23
SS18-201ENST00000269137 CDC27P30260 824 aa16.48■□□□□ 0.23
SS18-201ENST00000269137 ADD1P35611 737 aaKnown RBP16.48■□□□□ 0.23
SS18-201ENST00000269137 PRELPP51888 382 aa16.48■□□□□ 0.23
SS18-201ENST00000269137 RASSF7Q02833 373 aa16.48■□□□□ 0.23
SS18-201ENST00000269137 DLGAP5Q15398 846 aa16.48■□□□□ 0.23
SS18-201ENST00000269137 CATIPQ7Z7H3 387 aa16.48■□□□□ 0.23
SS18-201ENST00000269137 TDRD3Q9H7E2 651 aaKnown RBP16.48■□□□□ 0.23
SS18-201ENST00000269137 SERPINB13Q9UIV8 391 aa16.48■□□□□ 0.23
SS18-201ENST00000269137 COL2A1P02458 1487 aaPredicted RBP16.47■□□□□ 0.23
SS18-201ENST00000269137 FDPSP14324 419 aaKnown RBP16.47■□□□□ 0.23
SS18-201ENST00000269137 RXRAP19793 462 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 NTRK3Q16288 839 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 RTN1Q16799 776 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 RCSD1Q6JBY9 416 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 FANCBQ8NB91 859 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 RGS22Q8NE09 1264 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 NEDD1Q8NHV4 660 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 MYL10Q9BUA6 226 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 IL17RBQ9NRM6 502 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 NMT2O60551 498 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 DDAH1O94760 285 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 F13A1P00488 732 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 CALM1P0DP23 149 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 CALM2P0DP24 149 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 CALM3P0DP25 149 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 CACNB3P54284 484 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 TROAPQ12815 778 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 FOXD4L5Q5VV16 416 aaPredicted RBP16.47■□□□□ 0.23
SS18-201ENST00000269137 FKBP1CQ5VVH2 108 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 ZFPM1Q8IX07 1006 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 FOXD4L4Q8WXT5 416 aaPredicted RBP16.47■□□□□ 0.23
SS18-201ENST00000269137 ZBED3Q96IU2 234 aaPredicted RBP16.47■□□□□ 0.23
SS18-201ENST00000269137 ATP6V1DQ9Y5K8 247 aa16.47■□□□□ 0.23
SS18-201ENST00000269137 ATRNL1Q5VV63 1379 aa16.46■□□□□ 0.23
SS18-201ENST00000269137 PLIN4Q96Q06 1357 aa16.46■□□□□ 0.23
SS18-201ENST00000269137 VPS37CA5D8V6 355 aaPredicted RBP16.46■□□□□ 0.23
SS18-201ENST00000269137 IFNAR1P17181 557 aa16.46■□□□□ 0.23
SS18-201ENST00000269137 EIF6P56537 245 aaKnown RBP16.46■□□□□ 0.23
SS18-201ENST00000269137 ZNF280AP59817 542 aaPredicted RBP16.46■□□□□ 0.23
SS18-201ENST00000269137 TMOD2Q9NZR1 351 aa16.46■□□□□ 0.23
SS18-201ENST00000269137 ORC3Q9UBD5 711 aaPredicted RBP16.46■□□□□ 0.23
SS18-201ENST00000269137 PI4KBQ9UBF8 816 aa16.46■□□□□ 0.23
SS18-201ENST00000269137 GOLGA6L22H0YM25 854 aa16.45■□□□□ 0.22
SS18-201ENST00000269137 PTMSP20962 102 aa16.45■□□□□ 0.22
SS18-201ENST00000269137 SPDYE2Q495Y8 402 aa16.45■□□□□ 0.22
SS18-201ENST00000269137 CCDC144CPQ8IYA2 1237 aa16.45■□□□□ 0.22
SS18-201ENST00000269137 SYT17Q9BSW7 474 aa16.45■□□□□ 0.22
SS18-201ENST00000269137 NOVP48745 357 aa16.45■□□□□ 0.22
SS18-201ENST00000269137 TCP10Q12799 353 aa16.45■□□□□ 0.22
SS18-201ENST00000269137 CDC37L1Q7L3B6 337 aa16.45■□□□□ 0.22
SS18-201ENST00000269137 SH3BP5LQ7L8J4 393 aa16.45■□□□□ 0.22
SS18-201ENST00000269137 METTL16Q86W50 562 aaKnown RBP16.45■□□□□ 0.22
SS18-201ENST00000269137 FOXP4Q8IVH2 680 aaPredicted RBP16.45■□□□□ 0.22
SS18-201ENST00000269137 NUP133Q8WUM0 1156 aa16.45■□□□□ 0.22
SS18-201ENST00000269137 DPF2Q92785 391 aa16.45■□□□□ 0.22
SS18-201ENST00000269137 MAP3K14Q99558 947 aa16.45■□□□□ 0.22
SS18-201ENST00000269137 ZNF70Q9UC06 446 aaPredicted RBP16.45■□□□□ 0.22
SS18-201ENST00000269137 STK36Q9NRP7 1315 aa16.44■□□□□ 0.22
SS18-201ENST00000269137 DDTLA6NHG4 134 aaPredicted RBP16.44■□□□□ 0.22
SS18-201ENST00000269137 H3BQV1 296 aa16.44■□□□□ 0.22
SS18-201ENST00000269137 SHMT1P34896 483 aa16.44■□□□□ 0.22
SS18-201ENST00000269137 IFFO2Q5TF58 517 aa16.44■□□□□ 0.22
SS18-201ENST00000269137 ARHGAP27Q6ZUM4 889 aa16.44■□□□□ 0.22
SS18-201ENST00000269137 RBM28Q9NW13 759 aaKnown RBP16.44■□□□□ 0.22
SS18-201ENST00000269137 MYH8P13535 1937 aa16.44■□□□□ 0.22
SS18-201ENST00000269137 DICER1Q9UPY3 1922 aaKnown RBP16.44■□□□□ 0.22
SS18-201ENST00000269137 LMNB1P20700 586 aa16.43■□□□□ 0.22
SS18-201ENST00000269137 CCDC17Q96LX7 622 aa16.43■□□□□ 0.22
SS18-201ENST00000269137 KAT14Q9H8E8 782 aa16.43■□□□□ 0.22
SS18-201ENST00000269137 MYOZ2Q9NPC6 264 aa16.43■□□□□ 0.22
SS18-201ENST00000269137 SIPA1L1O43166 1804 aa16.43■□□□□ 0.22
SS18-201ENST00000269137 FMNL1O95466 1100 aaPredicted RBP16.42■□□□□ 0.22
SS18-201ENST00000269137 DEKP35659 375 aaKnown RBP16.42■□□□□ 0.22
SS18-201ENST00000269137 ZSCAN29Q8IWY8 852 aaPredicted RBP16.42■□□□□ 0.22
SS18-201ENST00000269137 CRACR2BQ8N4Y2 399 aaPredicted RBP16.42■□□□□ 0.22
SS18-201ENST00000269137 FAM151AQ8WW52 585 aa16.42■□□□□ 0.22
SS18-201ENST00000269137 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.42■□□□□ 0.22
SS18-201ENST00000269137 IGKV6D-41A0A0C4DH26 115 aa16.42■□□□□ 0.22
SS18-201ENST00000269137 MYO1BO43795 1136 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms