RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 ZKSCAN5Q9Y2L8 839 aa8.8□□□□□ -1
USP3-201ENST00000268049 M0R2C6 588 aa8.8□□□□□ -1
USP3-201ENST00000268049 ZNF397Q8NF99 534 aaPredicted RBP8.8□□□□□ -1
USP3-201ENST00000268049 PDRG1Q9NUG6 133 aa8.8□□□□□ -1
USP3-201ENST00000268049 TRMT1Q9NXH9 659 aaKnown RBP8.8□□□□□ -1
USP3-201ENST00000268049 MRPL11Q9Y3B7 192 aaKnown RBP8.8□□□□□ -1
USP3-201ENST00000268049 EYA2O00167 538 aa8.79□□□□□ -1
USP3-201ENST00000268049 CELF2O95319 508 aaKnown RBP8.79□□□□□ -1
USP3-201ENST00000268049 YARSP54577 528 aaKnown RBP8.79□□□□□ -1
USP3-201ENST00000268049 RNASELQ05823 741 aaKnown RBP8.79□□□□□ -1
USP3-201ENST00000268049 HEATR3Q7Z4Q2 680 aa8.79□□□□□ -1
USP3-201ENST00000268049 ANKRD44Q8N8A2 993 aa8.79□□□□□ -1
USP3-201ENST00000268049 ZBTB38Q8NAP3 1195 aaPredicted RBP8.79□□□□□ -1
USP3-201ENST00000268049 RNF169Q8NCN4 708 aa8.79□□□□□ -1
USP3-201ENST00000268049 PIDD1Q9HB75 910 aa8.79□□□□□ -1
USP3-201ENST00000268049 SRP68Q9UHB9 627 aaKnown RBP8.79□□□□□ -1
USP3-201ENST00000268049 MRVI1Q9Y6F6 885 aa8.79□□□□□ -1
USP3-201ENST00000268049 CEBPZQ03701 1054 aaKnown RBP8.79□□□□□ -1
USP3-201ENST00000268049 GABPB1Q06547 395 aaPredicted RBP8.79□□□□□ -1
USP3-201ENST00000268049 SLC15A2Q16348 729 aa8.79□□□□□ -1
USP3-201ENST00000268049 ARHGEF16Q5VV41 709 aa8.79□□□□□ -1
USP3-201ENST00000268049 YAF2Q8IY57 180 aa8.79□□□□□ -1
USP3-201ENST00000268049 PANK2Q9BZ23 570 aa8.79□□□□□ -1
USP3-201ENST00000268049 SLC8A2Q9UPR5 921 aa8.79□□□□□ -1
USP3-201ENST00000268049 MED14O60244 1454 aa8.79□□□□□ -1
USP3-201ENST00000268049 NCAPD2Q15021 1401 aa8.79□□□□□ -1
USP3-201ENST00000268049 RAD17O75943 681 aa8.79□□□□□ -1
USP3-201ENST00000268049 ADCY5O95622 1261 aa8.79□□□□□ -1
USP3-201ENST00000268049 CTNNA2P26232 953 aa8.79□□□□□ -1
USP3-201ENST00000268049 FBXO40Q9UH90 709 aa8.79□□□□□ -1
USP3-201ENST00000268049 NEURL1BA8MQ27 555 aa8.79□□□□□ -1
USP3-201ENST00000268049 DCDC2CA8MYV0 355 aa8.79□□□□□ -1
USP3-201ENST00000268049 LRCH2Q5VUJ6 765 aa8.79□□□□□ -1
USP3-201ENST00000268049 REM2Q8IYK8 340 aaPredicted RBP8.79□□□□□ -1
USP3-201ENST00000268049 ARFGAP3Q9NP61 516 aa8.79□□□□□ -1
USP3-201ENST00000268049 ERVV-1B6SEH8 477 aa8.78□□□□□ -1
USP3-201ENST00000268049 EBAG9O00559 213 aa8.78□□□□□ -1
USP3-201ENST00000268049 FLOT1O75955 427 aa8.78□□□□□ -1
USP3-201ENST00000268049 FAM13AO94988 1023 aa8.78□□□□□ -1
USP3-201ENST00000268049 ACTN2P35609 894 aa8.78□□□□□ -1
USP3-201ENST00000268049 SNW1Q13573 536 aaKnown RBP8.78□□□□□ -1
USP3-201ENST00000268049 DAAM2Q86T65 1068 aa8.78□□□□□ -1
USP3-201ENST00000268049 FAM212AQ96EL1 285 aa8.78□□□□□ -1
USP3-201ENST00000268049 CPDO75976 1380 aa8.78□□□□□ -1
USP3-201ENST00000268049 PCCAP05165 728 aaPredicted RBP8.78□□□□□ -1
USP3-201ENST00000268049 ARID4AP29374 1257 aaPredicted RBP8.78□□□□□ -1
USP3-201ENST00000268049 CTSWP56202 376 aa8.78□□□□□ -1
USP3-201ENST00000268049 TGFB2P61812 414 aa8.78□□□□□ -1
USP3-201ENST00000268049 SLC9C2Q5TAH2 1124 aa8.78□□□□□ -1
USP3-201ENST00000268049 LPIN2Q92539 896 aa8.78□□□□□ -1
USP3-201ENST00000268049 TSNARE1Q96NA8 513 aa8.78□□□□□ -1
USP3-201ENST00000268049 SAP30BPQ9UHR5 308 aaKnown RBP8.78□□□□□ -1
USP3-201ENST00000268049 MAP2K2P36507 400 aa8.78□□□□□ -1
USP3-201ENST00000268049 ME1P48163 572 aa8.78□□□□□ -1
USP3-201ENST00000268049 UVSSAQ2YD98 709 aa8.78□□□□□ -1
USP3-201ENST00000268049 CFAP100Q494V2 611 aa8.78□□□□□ -1
USP3-201ENST00000268049 FAM114A1Q8IWE2 563 aa8.78□□□□□ -1
USP3-201ENST00000268049 NSMCE1Q8WV22 266 aa8.78□□□□□ -1
USP3-201ENST00000268049 TFCP2Q12800 502 aa8.78□□□□□ -1
USP3-201ENST00000268049 OTUD6AQ7L8S5 288 aa8.78□□□□□ -1
USP3-201ENST00000268049 ZBTB8OSQ8IWT0 167 aa8.78□□□□□ -1
USP3-201ENST00000268049 SUDS3Q9H7L9 328 aaPredicted RBP8.78□□□□□ -1
USP3-201ENST00000268049 JAG2Q9Y219 1238 aa8.78□□□□□ -1
USP3-201ENST00000268049 IARSP41252 1262 aaKnown RBP8.78□□□□□ -1
USP3-201ENST00000268049 NONOQ15233 471 aaKnown RBP eCLIP8.78□□□□□ -1
USP3-201ENST00000268049 CLEC4GQ6UXB4 293 aa8.78□□□□□ -1
USP3-201ENST00000268049 CHST3Q7LGC8 479 aa8.78□□□□□ -1
USP3-201ENST00000268049 MAGEB6Q8N7X4 407 aa8.78□□□□□ -1
USP3-201ENST00000268049 CCDC113Q9H0I3 377 aa8.78□□□□□ -1
USP3-201ENST00000268049 RRAGDQ9NQL2 400 aaPredicted RBP8.78□□□□□ -1
USP3-201ENST00000268049 CCDC171Q6TFL3 1326 aa8.77□□□□□ -1
USP3-201ENST00000268049 P4HA1P13674 534 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 KRBA2Q6ZNG9 492 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 LZTS2Q9BRK4 669 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 NRBP2Q9NSY0 501 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 NARFQ9UHQ1 456 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 GSDMDP57764 484 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 TFDP1Q14186 410 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 C9orf131Q5VYM1 1079 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 OTUD6BQ8N6M0 293 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 TRIM47Q96LD4 638 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 COA1Q9GZY4 146 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 TMX1Q9H3N1 280 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 TTC12Q9H892 705 aaPredicted RBP8.77□□□□□ -1.01
USP3-201ENST00000268049 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.77□□□□□ -1.01
USP3-201ENST00000268049 UBA7P41226 1012 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 EIF5P55010 431 aaKnown RBP8.77□□□□□ -1.01
USP3-201ENST00000268049 IFFO1Q0D2I5 559 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 STK3Q13188 491 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 RNF34Q969K3 372 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 ZNF594Q96JF6 807 aaPredicted RBP8.77□□□□□ -1.01
USP3-201ENST00000268049 JAKMIP1Q96N16 626 aaKnown RBP8.77□□□□□ -1.01
USP3-201ENST00000268049 GOLGA6L9A6NEM1 432 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 NBPF26B4DH59 902 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 SEMA3EO15041 775 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 TAF5LO75529 589 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 CLNS1AP54105 237 aaKnown RBP8.77□□□□□ -1.01
USP3-201ENST00000268049 CCDC83Q8IWF9 413 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 TAF4BQ92750 862 aa8.77□□□□□ -1.01
USP3-201ENST00000268049 CCDC17Q96LX7 622 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms