RNA–Protein interactions for RNA: ENSMUST00000056508.11

Clcn3-202, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS P4 TSL 1 (best) BASIC

Gene Clcn3, Length 5,684 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-202ENSMUST00000056508 Tln1P26039 2541 aaKnown RBP4.11□□□□□ -1.75
Clcn3-202ENSMUST00000056508 Setd2E9Q5F9 2537 aa4.1□□□□□ -1.75
Clcn3-202ENSMUST00000056508 Ptpn13Q64512 2453 aa4.1□□□□□ -1.75
Clcn3-202ENSMUST00000056508 CubnQ9JLB4 3623 aa4.09□□□□□ -1.75
Clcn3-202ENSMUST00000056508 Gm7138L7N2C3 230 aa4.09□□□□□ -1.75
Clcn3-202ENSMUST00000056508 Gm3238W4VSP7 230 aa4.09□□□□□ -1.75
Clcn3-202ENSMUST00000056508 Gm3233E9Q2H5 230 aa4.09□□□□□ -1.76
Clcn3-202ENSMUST00000056508 Krtap7-1Q9D3I6 87 aa4.09□□□□□ -1.76
Clcn3-202ENSMUST00000056508 TrrapQ80YV3 2565 aaKnown RBP4.08□□□□□ -1.76
Clcn3-202ENSMUST00000056508 Nbeal1E9PYP2 2688 aa4.07□□□□□ -1.76
Clcn3-202ENSMUST00000056508 Ankrd17Q99NH0 2603 aaKnown RBP4.06□□□□□ -1.76
Clcn3-202ENSMUST00000056508 FasnP19096 2504 aaKnown RBP4.03□□□□□ -1.76
Clcn3-202ENSMUST00000056508 Zfp292Q9Z2U2 2698 aa4.02□□□□□ -1.77
Clcn3-202ENSMUST00000056508 Gm17402F6Z0L5 76 aa4.02□□□□□ -1.77
Clcn3-202ENSMUST00000056508 CicQ924A2 2510 aa4.01□□□□□ -1.77
Clcn3-202ENSMUST00000056508 Map1aQ9QYR6 2776 aa4.01□□□□□ -1.77
Clcn3-202ENSMUST00000056508 LorP18165 486 aa4□□□□□ -1.77
Clcn3-202ENSMUST00000056508 Prrc2cQ3TLH4 2846 aaKnown RBP3.99□□□□□ -1.77
Clcn3-202ENSMUST00000056508 Utp20Q5XG71 2788 aaKnown RBP3.97□□□□□ -1.77
Clcn3-202ENSMUST00000056508 Krtap13-1Q8K198 168 aa3.97□□□□□ -1.77
Clcn3-202ENSMUST00000056508 Celsr2Q9R0M0 2920 aa3.96□□□□□ -1.77
Clcn3-202ENSMUST00000056508 HrnrQ8VHD8 2496 aa3.95□□□□□ -1.78
Clcn3-202ENSMUST00000056508 Gm7137J3QMW1 236 aa3.93□□□□□ -1.78
Clcn3-202ENSMUST00000056508 Abca12E9Q876 2595 aa3.93□□□□□ -1.78
Clcn3-202ENSMUST00000056508 Xirp2Q4U4S6 3784 aa3.91□□□□□ -1.78
Clcn3-202ENSMUST00000056508 FlncQ8VHX6 2726 aaKnown RBP3.91□□□□□ -1.78
Clcn3-202ENSMUST00000056508 Ank2Q8C8R3 3898 aa3.91□□□□□ -1.78
Clcn3-202ENSMUST00000056508 Ubr5Q80TP3 2792 aa3.9□□□□□ -1.78
Clcn3-202ENSMUST00000056508 LrbaQ9ESE1 2856 aa3.9□□□□□ -1.78
Clcn3-202ENSMUST00000056508 A030003K21RikA0A1Y7VIM3 128 aa3.89□□□□□ -1.79
Clcn3-202ENSMUST00000056508 Nsd1O88491 2588 aaKnown RBP3.89□□□□□ -1.79
Clcn3-202ENSMUST00000056508 Mast4Q811L6 2618 aa3.87□□□□□ -1.79
Clcn3-202ENSMUST00000056508 Notch1Q01705 2531 aa3.86□□□□□ -1.79
Clcn3-202ENSMUST00000056508 Myo18bE9PV66 2605 aa3.86□□□□□ -1.79
Clcn3-202ENSMUST00000056508 SetxA2AKX3 2646 aa3.85□□□□□ -1.79
Clcn3-202ENSMUST00000056508 BsnO88737 3942 aa3.85□□□□□ -1.79
Clcn3-202ENSMUST00000056508 Tep1P97499 2629 aa3.84□□□□□ -1.79
Clcn3-202ENSMUST00000056508 Nf1Q04690 2841 aa3.83□□□□□ -1.8
Clcn3-202ENSMUST00000056508 Krtap1-3A2A588 173 aa3.82□□□□□ -1.8
Clcn3-202ENSMUST00000056508 Csmd3Q80T79 3707 aa3.82□□□□□ -1.8
Clcn3-202ENSMUST00000056508 OtogO55225 2910 aa3.79□□□□□ -1.8
Clcn3-202ENSMUST00000056508 Chd6A3KFM7 2711 aa3.78□□□□□ -1.8
Clcn3-202ENSMUST00000056508 Itpr3P70227 2670 aa3.78□□□□□ -1.8
Clcn3-202ENSMUST00000056508 Gm36176A0A1W2P8D5 158 aa3.78□□□□□ -1.8
Clcn3-202ENSMUST00000056508 Usp24B1AY13 2617 aaKnown RBP3.78□□□□□ -1.8
Clcn3-202ENSMUST00000056508 Chd9Q8BYH8 2885 aa3.78□□□□□ -1.8
Clcn3-202ENSMUST00000056508 Muc2Q80Z19 2680 aa3.77□□□□□ -1.81
Clcn3-202ENSMUST00000056508 Bahcc1Q3UHR0 2643 aa3.77□□□□□ -1.81
Clcn3-202ENSMUST00000056508 Gm18596A0A1W2P860 280 aa3.76□□□□□ -1.81
Clcn3-202ENSMUST00000056508 Fn1P11276 2477 aaKnown RBP3.76□□□□□ -1.81
Clcn3-202ENSMUST00000056508 Akap13E9Q394 2776 aa3.75□□□□□ -1.81
Clcn3-202ENSMUST00000056508 Unc79Q0KK59 2596 aa3.75□□□□□ -1.81
Clcn3-202ENSMUST00000056508 Gm9507D3Z5T3 223 aa3.75□□□□□ -1.81
Clcn3-202ENSMUST00000056508 AtrQ9JKK8 2635 aa3.74□□□□□ -1.81
Clcn3-202ENSMUST00000056508 Tenm4Q3UHK6 2771 aa3.74□□□□□ -1.81
Clcn3-202ENSMUST00000056508 Gm10272F7CZ33 110 aa3.73□□□□□ -1.81
Clcn3-202ENSMUST00000056508 Gm19668J3QMD1 248 aa3.72□□□□□ -1.81
Clcn3-202ENSMUST00000056508 Hectd1Q69ZR2 2618 aaKnown RBP3.71□□□□□ -1.82
Clcn3-202ENSMUST00000056508 Pdzd2E9Q1M1 2796 aa3.71□□□□□ -1.82
Clcn3-202ENSMUST00000056508 Gcn1E9PVA8 2671 aaKnown RBP3.7□□□□□ -1.82
Clcn3-202ENSMUST00000056508 Krtap10-4Q08EG8 221 aa3.7□□□□□ -1.82
Clcn3-202ENSMUST00000056508 Krtap10-10A0A1W2P7T6 217 aa3.66□□□□□ -1.82
Clcn3-202ENSMUST00000056508 NipblQ6KCD5 2798 aaKnown RBP3.65□□□□□ -1.83
Clcn3-202ENSMUST00000056508 Gm6217A0A1Y7VJK9 128 aa3.64□□□□□ -1.83
Clcn3-202ENSMUST00000056508 Tex15F8VPN2 2785 aa3.61□□□□□ -1.83
Clcn3-202ENSMUST00000056508 Gm19402J3QJV4 266 aa3.59□□□□□ -1.83
Clcn3-202ENSMUST00000056508 Fras1Q80T14 4010 aa3.57□□□□□ -1.84
Clcn3-202ENSMUST00000056508 Tenm1Q9WTS4 2731 aa3.57□□□□□ -1.84
Clcn3-202ENSMUST00000056508 Krtap4-1Q3UUY3 169 aa3.55□□□□□ -1.84
Clcn3-202ENSMUST00000056508 Stab1Q8R4Y4 2571 aa3.55□□□□□ -1.84
Clcn3-202ENSMUST00000056508 Nbeal2Q6ZQA0 2742 aa3.55□□□□□ -1.84
Clcn3-202ENSMUST00000056508 Gm2696A0A1W2P709 240 aa3.54□□□□□ -1.84
Clcn3-202ENSMUST00000056508 Fbn1Q61554 2873 aaKnown RBP3.54□□□□□ -1.84
Clcn3-202ENSMUST00000056508 VwfQ8CIZ8 2813 aa3.53□□□□□ -1.85
Clcn3-202ENSMUST00000056508 Dnah10D3YYQ8 4591 aa3.53□□□□□ -1.85
Clcn3-202ENSMUST00000056508 9530053A07RikE9PVG8 2581 aa3.52□□□□□ -1.85
Clcn3-202ENSMUST00000056508 FlnaQ8BTM8 2647 aaKnown RBP3.52□□□□□ -1.85
Clcn3-202ENSMUST00000056508 Igfn1Q3KNY0 2849 aa3.5□□□□□ -1.85
Clcn3-202ENSMUST00000056508 Gm9918Q8BUR5 174 aa3.5□□□□□ -1.85
Clcn3-202ENSMUST00000056508 Gm10024A0A0A0MQA4 119 aa3.49□□□□□ -1.85
Clcn3-202ENSMUST00000056508 TgO08710 2766 aa3.49□□□□□ -1.85
Clcn3-202ENSMUST00000056508 Muc6Q80T03 2850 aa3.49□□□□□ -1.85
Clcn3-202ENSMUST00000056508 FcgbpE9Q0B5 2583 aa3.48□□□□□ -1.85
Clcn3-202ENSMUST00000056508 Igsf10Q3V1M1 2594 aa3.48□□□□□ -1.85
Clcn3-202ENSMUST00000056508 Krtap19-3Q925H6 87 aa3.48□□□□□ -1.85
Clcn3-202ENSMUST00000056508 Hivep1Q03172 2688 aa3.47□□□□□ -1.85
Clcn3-202ENSMUST00000056508 Tenm3Q9WTS6 2715 aa3.47□□□□□ -1.85
Clcn3-202ENSMUST00000056508 Srrm2Q8BTI8 2703 aaKnown RBP3.46□□□□□ -1.86
Clcn3-202ENSMUST00000056508 Col6a5A6H584 2640 aa3.42□□□□□ -1.86
Clcn3-202ENSMUST00000056508 Ryr1E9PZQ0 5035 aa3.41□□□□□ -1.86
Clcn3-202ENSMUST00000056508 Stab2Q8R4U0 2559 aa3.4□□□□□ -1.87
Clcn3-202ENSMUST00000056508 Tenm2Q9WTS5 2764 aa3.4□□□□□ -1.87
Clcn3-202ENSMUST00000056508 A0A1Y7VJH8 109 aa3.4□□□□□ -1.87
Clcn3-202ENSMUST00000056508 Pkd1l1Q8R526 2615 aa3.39□□□□□ -1.87
Clcn3-202ENSMUST00000056508 Sprr2a3Q4KL71 83 aa3.37□□□□□ -1.87
Clcn3-202ENSMUST00000056508 Sprr2a1Q9CQK8 83 aa3.37□□□□□ -1.87
Clcn3-202ENSMUST00000056508 Megf8P60882 2789 aa3.34□□□□□ -1.87
Clcn3-202ENSMUST00000056508 Gm10142J3KMP7 120 aa3.34□□□□□ -1.88
Clcn3-202ENSMUST00000056508 Krtap1-4Q3V2D6 188 aa3.34□□□□□ -1.88
Clcn3-202ENSMUST00000056508 Gm11563B1AQ90 168 aa3.33□□□□□ -1.88
Retrieved 100 of 22,080 RNA–protein pairs in 93.7 ms