RNA–Protein interactions for RNA: ENSMUST00000004430.13

Clcn3-201, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,175 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-201ENSMUST00000004430 Igkv8-19A0A0G2JFN8 121 aa8.48□□□□□ -1.05
Clcn3-201ENSMUST00000004430 Smim29Q8R043 75 aa8.48□□□□□ -1.05
Clcn3-201ENSMUST00000004430 Sprr1bQ62267 153 aa8.47□□□□□ -1.05
Clcn3-201ENSMUST00000004430 LystP97412 3788 aa8.47□□□□□ -1.05
Clcn3-201ENSMUST00000004430 Sox16Q62247 57 aa8.46□□□□□ -1.06
Clcn3-201ENSMUST00000004430 Pdzd2E9Q1M1 2796 aa8.45□□□□□ -1.06
Clcn3-201ENSMUST00000004430 Tenm3Q9WTS6 2715 aa8.45□□□□□ -1.06
Clcn3-201ENSMUST00000004430 Nupr2Q497P3 102 aa8.45□□□□□ -1.06
Clcn3-201ENSMUST00000004430 Igkv3-7A0A0G2JE31 119 aa8.44□□□□□ -1.06
Clcn3-201ENSMUST00000004430 Igkv3-3A0A140T8Q0 119 aa8.44□□□□□ -1.06
Clcn3-201ENSMUST00000004430 Wfdc3Q14AE4 130 aa8.44□□□□□ -1.06
Clcn3-201ENSMUST00000004430 Spata3Q9D9T6 193 aa8.44□□□□□ -1.06
Clcn3-201ENSMUST00000004430 Pkd1l1Q8R526 2615 aa8.44□□□□□ -1.06
Clcn3-201ENSMUST00000004430 Defb11Q8R2I7 77 aa8.43□□□□□ -1.06
Clcn3-201ENSMUST00000004430 Gm11213A0A1B0GR83 88 aa8.43□□□□□ -1.06
Clcn3-201ENSMUST00000004430 Gm28374F6SG70 93 aa8.43□□□□□ -1.06
Clcn3-201ENSMUST00000004430 Sprr4Q8CGN8 76 aa8.43□□□□□ -1.06
Clcn3-201ENSMUST00000004430 U90926O08546 118 aa8.42□□□□□ -1.06
Clcn3-201ENSMUST00000004430 Dmac1Q9CQ00 111 aa8.42□□□□□ -1.06
Clcn3-201ENSMUST00000004430 SmcpP15265 143 aa8.4□□□□□ -1.06
Clcn3-201ENSMUST00000004430 Wfdc6bF6ULY1 148 aa8.39□□□□□ -1.07
Clcn3-201ENSMUST00000004430 Gm7138L7N2C3 230 aa8.39□□□□□ -1.07
Clcn3-201ENSMUST00000004430 Gm3238W4VSP7 230 aa8.39□□□□□ -1.07
Clcn3-201ENSMUST00000004430 Q8BT88 171 aa8.38□□□□□ -1.07
Clcn3-201ENSMUST00000004430 Coa5Q99M07 74 aa8.37□□□□□ -1.07
Clcn3-201ENSMUST00000004430 Psors1c2Q80ZC9 134 aa8.37□□□□□ -1.07
Clcn3-201ENSMUST00000004430 H2al1kJ3QP08 105 aa8.36□□□□□ -1.07
Clcn3-201ENSMUST00000004430 H2al1mQ9DAD9 105 aa8.36□□□□□ -1.07
Clcn3-201ENSMUST00000004430 AI606181Q8C7B9 129 aa8.36□□□□□ -1.07
Clcn3-201ENSMUST00000004430 Cdc42se1Q8BHL7 80 aa8.35□□□□□ -1.07
Clcn3-201ENSMUST00000004430 Gm11627A6PWP4 55 aa8.35□□□□□ -1.07
Clcn3-201ENSMUST00000004430 Bean1Q9EQG5 255 aa8.34□□□□□ -1.07
Clcn3-201ENSMUST00000004430 Stab2Q8R4U0 2559 aa8.34□□□□□ -1.07
Clcn3-201ENSMUST00000004430 Phf5aP83870 110 aaKnown RBP8.34□□□□□ -1.07
Clcn3-201ENSMUST00000004430 Znf414Q9DCK4 299 aa8.34□□□□□ -1.07
Clcn3-201ENSMUST00000004430 Gm20604F8WIA3 75 aa8.33□□□□□ -1.08
Clcn3-201ENSMUST00000004430 Gm7137J3QMW1 236 aa8.33□□□□□ -1.08
Clcn3-201ENSMUST00000004430 Gm10160F6Y577 67 aa8.33□□□□□ -1.08
Clcn3-201ENSMUST00000004430 Sec61gP60060 68 aa8.32□□□□□ -1.08
Clcn3-201ENSMUST00000004430 ApcQ61315 2845 aa8.32□□□□□ -1.08
Clcn3-201ENSMUST00000004430 Gm16181B0V2H2 73 aa8.32□□□□□ -1.08
Clcn3-201ENSMUST00000004430 1600014C23RikQ9DAX4 101 aa8.32□□□□□ -1.08
Clcn3-201ENSMUST00000004430 Ndufb1P0DN34 57 aa8.32□□□□□ -1.08
Clcn3-201ENSMUST00000004430 Gm10642Q3TWM1 71 aa8.31□□□□□ -1.08
Clcn3-201ENSMUST00000004430 9530053A07RikE9PVG8 2581 aa8.31□□□□□ -1.08
Clcn3-201ENSMUST00000004430 Adm2Q7TNK8 150 aa8.31□□□□□ -1.08
Clcn3-201ENSMUST00000004430 Col7a1Q63870 2944 aa8.31□□□□□ -1.08
Clcn3-201ENSMUST00000004430 AplnQ9R0R4 77 aa8.3□□□□□ -1.08
Clcn3-201ENSMUST00000004430 Defb39Q70KL3 74 aa8.29□□□□□ -1.08
Clcn3-201ENSMUST00000004430 A730071L15RikQ8C4X0 137 aa8.29□□□□□ -1.08
Clcn3-201ENSMUST00000004430 Ly6g6cQ9Z1Q4 126 aa8.29□□□□□ -1.08
Clcn3-201ENSMUST00000004430 P84750 121 aa8.28□□□□□ -1.08
Clcn3-201ENSMUST00000004430 Ank2Q8C8R3 3898 aa8.27□□□□□ -1.09
Clcn3-201ENSMUST00000004430 Gm10837Q3UTT8 145 aa8.25□□□□□ -1.09
Clcn3-201ENSMUST00000004430 Wfdc17Q5SSJ1 76 aa8.25□□□□□ -1.09
Clcn3-201ENSMUST00000004430 CubnQ9JLB4 3623 aa8.25□□□□□ -1.09
Clcn3-201ENSMUST00000004430 A930002H24RikQ8C8Y3 163 aa8.25□□□□□ -1.09
Clcn3-201ENSMUST00000004430 Prol1E9PYQ4 312 aa8.23□□□□□ -1.09
Clcn3-201ENSMUST00000004430 Gm7276Q3TYW4 209 aa8.23□□□□□ -1.09
Clcn3-201ENSMUST00000004430 BsnO88737 3942 aa8.22□□□□□ -1.09
Clcn3-201ENSMUST00000004430 Q8K1L6 76 aa8.21□□□□□ -1.09
Clcn3-201ENSMUST00000004430 Gm20661K7N787 53 aa8.21□□□□□ -1.09
Clcn3-201ENSMUST00000004430 Chchd10Q7TNL9 138 aa8.21□□□□□ -1.09
Clcn3-201ENSMUST00000004430 Chtf8P0CG14 533 aa8.21□□□□□ -1.1
Clcn3-201ENSMUST00000004430 Xirp2Q4U4S6 3784 aa8.21□□□□□ -1.1
Clcn3-201ENSMUST00000004430 Itpr2Q9Z329 2701 aa8.19□□□□□ -1.1
Clcn3-201ENSMUST00000004430 Phxr4P15974 95 aa8.18□□□□□ -1.1
Clcn3-201ENSMUST00000004430 Anapc11Q9CPX9 84 aa8.16□□□□□ -1.1
Clcn3-201ENSMUST00000004430 Ccdc179J3QM76 67 aa8.16□□□□□ -1.1
Clcn3-201ENSMUST00000004430 Znf706Q9D115 76 aaKnown RBP8.14□□□□□ -1.11
Clcn3-201ENSMUST00000004430 Defb1P56386 69 aa8.14□□□□□ -1.11
Clcn3-201ENSMUST00000004430 Tenm4Q3UHK6 2771 aa8.13□□□□□ -1.11
Clcn3-201ENSMUST00000004430 Gm10999F6Q4M4 69 aa8.13□□□□□ -1.11
Clcn3-201ENSMUST00000004430 TgO08710 2766 aa8.12□□□□□ -1.11
Clcn3-201ENSMUST00000004430 Zcchc13Q9D548 170 aa8.12□□□□□ -1.11
Clcn3-201ENSMUST00000004430 Gm9508A0A1W2P7W0 230 aa8.11□□□□□ -1.11
Clcn3-201ENSMUST00000004430 Spaca4Q80ZQ0 127 aa8.09□□□□□ -1.11
Clcn3-201ENSMUST00000004430 Defb9Q8R2I6 67 aa8.07□□□□□ -1.12
Clcn3-201ENSMUST00000004430 Plac8Q9JI48 112 aa8.07□□□□□ -1.12
Clcn3-201ENSMUST00000004430 Fbn1Q61554 2873 aaKnown RBP8.05□□□□□ -1.12
Clcn3-201ENSMUST00000004430 Srrm2Q8BTI8 2703 aaKnown RBP8.04□□□□□ -1.12
Clcn3-201ENSMUST00000004430 Gm27235Q3UW50 83 aa8.03□□□□□ -1.12
Clcn3-201ENSMUST00000004430 Fam104aA2A6P4 185 aa8.02□□□□□ -1.13
Clcn3-201ENSMUST00000004430 Phxr5P08399 672 aa8.02□□□□□ -1.13
Clcn3-201ENSMUST00000004430 Gm36176A0A1W2P8D5 158 aa8.01□□□□□ -1.13
Clcn3-201ENSMUST00000004430 FcgbpE9Q0B5 2583 aa8□□□□□ -1.13
Clcn3-201ENSMUST00000004430 Gpr15lA0A0B4J1N3 78 aa7.99□□□□□ -1.13
Clcn3-201ENSMUST00000004430 Q8BGJ3 129 aa7.99□□□□□ -1.13
Clcn3-201ENSMUST00000004430 Tenm1Q9WTS4 2731 aa7.98□□□□□ -1.13
Clcn3-201ENSMUST00000004430 Limd2Q8BGB5 128 aa7.96□□□□□ -1.13
Clcn3-201ENSMUST00000004430 Hspg2Q05793 3707 aaKnown RBP7.93□□□□□ -1.14
Clcn3-201ENSMUST00000004430 Sprr1aQ62266 144 aa7.92□□□□□ -1.14
Clcn3-201ENSMUST00000004430 Cypt15B1AXS0 87 aa7.88□□□□□ -1.15
Clcn3-201ENSMUST00000004430 OxtP35454 125 aa7.86□□□□□ -1.15
Clcn3-201ENSMUST00000004430 Odf3bQ5M8M2 238 aa7.86□□□□□ -1.15
Clcn3-201ENSMUST00000004430 Gm10139O88245 57 aa7.84□□□□□ -1.15
Clcn3-201ENSMUST00000004430 6030445D17RikE9Q8F9 148 aa7.84□□□□□ -1.15
Clcn3-201ENSMUST00000004430 Gm21798J3QNU5 87 aa7.84□□□□□ -1.15
Clcn3-201ENSMUST00000004430 Uqcr11Q9CPX8 56 aa7.81□□□□□ -1.16
Clcn3-201ENSMUST00000004430 Gm37013Q8K491 104 aa7.8□□□□□ -1.16
Retrieved 100 of 22,080 RNA–protein pairs in 139.8 ms