RNA–Protein interactions for RNA: YHR111W

UBA4, Transcript of E1-like protein that activates Urm1p before urmylation, yeast

Gene UBA4, Length 1,323 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBA4	YHR111W	ATM1	P40416	690 aa		10.44	□□□□□ -0.74
UBA4	YHR111W	RRN7	P40992	514 aa		10.44	□□□□□ -0.74
UBA4	YHR111W	TRF5	P48561	642 aa	Known RBP	10.44	□□□□□ -0.74
UBA4	YHR111W	AIM14	P53109	570 aa		10.44	□□□□□ -0.74
UBA4	YHR111W	YNL035C	P53962	389 aa	Known RBP	10.44	□□□□□ -0.74
UBA4	YHR111W	CLU1	Q03690	1277 aa	Known RBP	10.44	□□□□□ -0.74
UBA4	YHR111W	YMR114C	Q04471	368 aa	Known RBP	10.44	□□□□□ -0.74
UBA4	YHR111W	VAC14	Q06708	880 aa		10.44	□□□□□ -0.74
UBA4	YHR111W	APL5	Q08951	932 aa	Known RBP	10.44	□□□□□ -0.74
UBA4	YHR111W	YDR018C	Q12185	396 aa		10.44	□□□□□ -0.74
UBA4	YHR111W	SST2	P11972	698 aa	Known RBP	10.43	□□□□□ -0.74
UBA4	YHR111W	MRPL8	P22353	238 aa		10.43	□□□□□ -0.74
UBA4	YHR111W	MIH1	P23748	554 aa		10.43	□□□□□ -0.74
UBA4	YHR111W	OTU2	P38747	307 aa	Known RBP	10.43	□□□□□ -0.74
UBA4	YHR111W	ALY2	P47029	1046 aa		10.43	□□□□□ -0.74
UBA4	YHR111W	APT1	P49435	187 aa	Known RBP	10.43	□□□□□ -0.74
UBA4	YHR111W	NPY1	P53164	384 aa		10.43	□□□□□ -0.74
UBA4	YHR111W	YTP1	P53584	459 aa		10.43	□□□□□ -0.74
UBA4	YHR111W	JIP5	Q06214	492 aa	Predicted RBP	10.43	□□□□□ -0.74
UBA4	YHR111W	PAT1	P25644	796 aa	Known RBP	10.42	□□□□□ -0.74
UBA4	YHR111W	PCF11	P39081	626 aa	Predicted RBP	10.42	□□□□□ -0.74
UBA4	YHR111W	MKT1	P40850	830 aa	Known RBP	10.42	□□□□□ -0.74
UBA4	YHR111W	PRM1	P53835	661 aa		10.42	□□□□□ -0.74
UBA4	YHR111W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	10.42	□□□□□ -0.74	not detected
UBA4	YHR111W	MRS6	P32864	603 aa	Known RBP	10.41	□□□□□ -0.74
UBA4	YHR111W	DIA4	P38705	446 aa	Predicted RBP	10.41	□□□□□ -0.74
UBA4	YHR111W	PPE1	P38796	400 aa		10.41	□□□□□ -0.74
UBA4	YHR111W	END3	P39013	349 aa		10.41	□□□□□ -0.74
UBA4	YHR111W	SER33	P40510	469 aa		10.41	□□□□□ -0.74
UBA4	YHR111W	ROK1	P45818	564 aa	Predicted RBP	10.41	□□□□□ -0.74
UBA4	YHR111W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	10.41	□□□□□ -0.74	not detected
UBA4	YHR111W	BOP3	P53958	396 aa		10.41	□□□□□ -0.74
UBA4	YHR111W	ORC3	P54790	616 aa		10.41	□□□□□ -0.74
UBA4	YHR111W	ENT5	Q03769	411 aa	Known RBP	10.41	□□□□□ -0.74
UBA4	YHR111W	AAD15	Q08361	143 aa		10.41	□□□□□ -0.74
UBA4	YHR111W	OCA6	Q12454	224 aa		10.41	□□□□□ -0.74
UBA4	YHR111W	CCR4	P31384	837 aa	Known RBP	10.4	□□□□□ -0.74
UBA4	YHR111W	LIP5	P32875	414 aa		10.4	□□□□□ -0.74
UBA4	YHR111W	YJR061W	P40355	935 aa		10.4	□□□□□ -0.74
UBA4	YHR111W	REF2	P42073	533 aa	Predicted RBP	10.4	□□□□□ -0.74
UBA4	YHR111W	PGC1	Q08959	321 aa		10.4	□□□□□ -0.74
UBA4	YHR111W	YLL056C	Q12177	298 aa		10.4	□□□□□ -0.74
UBA4	YHR111W	PET123	P17558	318 aa		10.39	□□□□□ -0.75
UBA4	YHR111W	RML2	P32611	393 aa		10.39	□□□□□ -0.75
UBA4	YHR111W	RAD5	P32849	1169 aa	Predicted RBP	10.39	□□□□□ -0.75
UBA4	YHR111W	YHL041W	P38730	149 aa		10.39	□□□□□ -0.75
UBA4	YHR111W	MND2	P40577	368 aa		10.39	□□□□□ -0.75
UBA4	YHR111W	EMC4	P53073	190 aa		10.39	□□□□□ -0.75
UBA4	YHR111W	AQR1	P53943	586 aa		10.39	□□□□□ -0.75
UBA4	YHR111W	RPL34A	P87262	121 aa	Predicted RBP	10.39	□□□□□ -0.75
UBA4	YHR111W	SML1	Q04964	104 aa		10.39	□□□□□ -0.75
UBA4	YHR111W	HEL2	Q05580	639 aa	Known RBP	10.39	□□□□□ -0.75
UBA4	YHR111W	FAP7	Q12055	197 aa	Predicted RBP	10.39	□□□□□ -0.75
UBA4	YHR111W	AI5_ALPHA	Q9ZZX1	630 aa		10.39	□□□□□ -0.75
UBA4	YHR111W	TOR1	P35169	2470 aa		10.39	□□□□□ -0.75
UBA4	YHR111W	COX5A	P00424	153 aa		10.38	□□□□□ -0.75
UBA4	YHR111W	AAT2	P23542	418 aa	Known RBP	10.38	□□□□□ -0.75
UBA4	YHR111W	TGL4	P36165	910 aa		10.38	□□□□□ -0.75
UBA4	YHR111W	YHR078W	P38799	552 aa		10.38	□□□□□ -0.75
UBA4	YHR111W	BAT1	P38891	393 aa	Known RBP	10.38	□□□□□ -0.75
UBA4	YHR111W	PAN6	P40459	309 aa		10.38	□□□□□ -0.75
UBA4	YHR111W	HLJ1	P48353	224 aa		10.38	□□□□□ -0.75
UBA4	YHR111W	CWC22	P53333	577 aa	Known RBP	10.38	□□□□□ -0.75
UBA4	YHR111W	IPI3	P53877	555 aa		10.38	□□□□□ -0.75
UBA4	YHR111W	NMA111	P53920	997 aa		10.38	□□□□□ -0.75
UBA4	YHR111W	CMS1	Q07897	291 aa	Known RBP	10.38	□□□□□ -0.75
UBA4	YHR111W	NRT1	Q08485	598 aa		10.38	□□□□□ -0.75
UBA4	YHR111W	SCH9	P11792	824 aa	Known RBP	10.37	□□□□□ -0.75
UBA4	YHR111W	DCW1	P36091	449 aa		10.37	□□□□□ -0.75
UBA4	YHR111W	YMR134W	P40207	237 aa		10.37	□□□□□ -0.75
UBA4	YHR111W	ELO3	P40319	345 aa		10.37	□□□□□ -0.75
UBA4	YHR111W	RAD26	P40352	1085 aa		10.37	□□□□□ -0.75
UBA4	YHR111W	MNT2	P53059	558 aa		10.37	□□□□□ -0.75
UBA4	YHR111W	TIM13	P53299	105 aa		10.37	□□□□□ -0.75
UBA4	YHR111W	MTG1	Q03151	367 aa	Predicted RBP	10.37	□□□□□ -0.75
UBA4	YHR111W	ARP9	Q05123	467 aa		10.37	□□□□□ -0.75
UBA4	YHR111W	YPR114W	Q06107	315 aa		10.37	□□□□□ -0.75
UBA4	YHR111W	TRE2	Q08693	809 aa		10.37	□□□□□ -0.75
UBA4	YHR111W	AIM41	Q12032	185 aa		10.37	□□□□□ -0.75
UBA4	YHR111W	SFI1	Q12369	946 aa		10.37	□□□□□ -0.75
UBA4	YHR111W	ZRT2	Q12436	422 aa		10.37	□□□□□ -0.75
UBA4	YHR111W	LEU1	P07264	779 aa	Known RBP	10.36	□□□□□ -0.75
UBA4	YHR111W	MNE1	P24720	663 aa		10.36	□□□□□ -0.75
UBA4	YHR111W	PAP1	P29468	568 aa	Known RBP	10.36	□□□□□ -0.75
UBA4	YHR111W	SRX1	P36077	127 aa		10.36	□□□□□ -0.75
UBA4	YHR111W	ALY1	P36117	915 aa		10.36	□□□□□ -0.75
UBA4	YHR111W	CKB2	P38930	258 aa		10.36	□□□□□ -0.75
UBA4	YHR111W	YAT2	P40017	923 aa		10.36	□□□□□ -0.75
UBA4	YHR111W	IST3	P40565	148 aa	Predicted RBP	10.36	□□□□□ -0.75
UBA4	YHR111W	RPC17	P47076	161 aa		10.36	□□□□□ -0.75
UBA4	YHR111W	YJR124C	P47159	448 aa		10.36	□□□□□ -0.75
UBA4	YHR111W	RIM8	P53179	542 aa		10.36	□□□□□ -0.75
UBA4	YHR111W	REG1	Q00816	1014 aa		10.36	□□□□□ -0.75
UBA4	YHR111W	YMR187C	Q03236	431 aa		10.36	□□□□□ -0.75
UBA4	YHR111W	TDA9	Q04545	1251 aa		10.36	□□□□□ -0.75
UBA4	YHR111W	POB3	Q04636	552 aa	Known RBP	10.36	□□□□□ -0.75
UBA4	YHR111W	OPI10	Q08202	246 aa		10.36	□□□□□ -0.75
UBA4	YHR111W	ECM2	P38241	364 aa	Known RBP	10.35	□□□□□ -0.75
UBA4	YHR111W	GLG2	P47011	380 aa		10.35	□□□□□ -0.75
UBA4	YHR111W	DAN4	P47179	1161 aa		10.35	□□□□□ -0.75

Retrieved 100 of 5,963 RNA–protein pairs in 35.3 ms