RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 USP17L12C9JPN9 530 aa13.38□□□□□ -0.27
CLN6-217ENST00000636964 USP17L21D6R901 530 aa13.38□□□□□ -0.27
CLN6-217ENST00000636964 RIMBP2O15034 1052 aa13.38□□□□□ -0.27
CLN6-217ENST00000636964 BBOX1O75936 387 aa13.38□□□□□ -0.27
CLN6-217ENST00000636964 METAP2P50579 478 aaKnown RBP eCLIP13.38□□□□□ -0.27
CLN6-217ENST00000636964 APOA5Q6Q788 366 aa13.38□□□□□ -0.27
CLN6-217ENST00000636964 TMEM87AQ8NBN3 555 aa13.38□□□□□ -0.27
CLN6-217ENST00000636964 STAG1Q8WVM7 1258 aa13.38□□□□□ -0.27
CLN6-217ENST00000636964 KRT23Q9C075 422 aa13.38□□□□□ -0.27
CLN6-217ENST00000636964 SPTLC3Q9NUV7 552 aa13.38□□□□□ -0.27
CLN6-217ENST00000636964 ORC3Q9UBD5 711 aaPredicted RBP13.38□□□□□ -0.27
CLN6-217ENST00000636964 CDC27P30260 824 aa13.37□□□□□ -0.27
CLN6-217ENST00000636964 RESTQ13127 1097 aa13.37□□□□□ -0.27
CLN6-217ENST00000636964 WDR19Q8NEZ3 1342 aa13.37□□□□□ -0.27
CLN6-217ENST00000636964 LDHBP07195 334 aaKnown RBP13.37□□□□□ -0.27
CLN6-217ENST00000636964 PHKBQ93100 1093 aa13.37□□□□□ -0.27
CLN6-217ENST00000636964 TMEM87BQ96K49 555 aa13.37□□□□□ -0.27
CLN6-217ENST00000636964 CNNM2Q9H8M5 875 aa13.37□□□□□ -0.27
CLN6-217ENST00000636964 CD209Q9NNX6 404 aa13.37□□□□□ -0.27
CLN6-217ENST00000636964 BAZ2AQ9UIF9 1905 aaKnown RBP13.37□□□□□ -0.27
CLN6-217ENST00000636964 HOXA10P31260 410 aaPredicted RBP13.36□□□□□ -0.27
CLN6-217ENST00000636964 UBE2HP62256 183 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 CTR9Q6PD62 1173 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 TBC1D16Q8TBP0 767 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 AIFM3Q96NN9 605 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 TSPY26PQ9H489 355 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 ZBTB43O43298 467 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 DHX16O60231 1041 aaKnown RBP13.36□□□□□ -0.27
CLN6-217ENST00000636964 CYP2D6P10635 497 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 ATP2B4P23634 1241 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 EN1Q05925 392 aaPredicted RBP13.36□□□□□ -0.27
CLN6-217ENST00000636964 ANKRD7Q92527 254 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 FTOQ9C0B1 505 aaKnown RBP eCLIP13.36□□□□□ -0.27
CLN6-217ENST00000636964 USP25Q9UHP3 1055 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 KIF3AQ9Y496 699 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 CCDC69A6NI79 296 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 UBE2Q2LH0YL09 131 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 CCDC82Q8N4S0 544 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 WDR66Q8TBY9 1149 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 CRAMP1Q96RY5 1269 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 CGNQ9P2M7 1197 aaKnown RBP13.36□□□□□ -0.27
CLN6-217ENST00000636964 SLC12A7Q9Y666 1083 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 PARP3Q9Y6F1 533 aa13.36□□□□□ -0.27
CLN6-217ENST00000636964 PPEF1O14829 653 aaPredicted RBP13.35□□□□□ -0.27
CLN6-217ENST00000636964 RANBP6O60518 1105 aaKnown RBP13.35□□□□□ -0.27
CLN6-217ENST00000636964 EZH2Q15910 746 aaKnown RBP13.35□□□□□ -0.27
CLN6-217ENST00000636964 SPTY2D1Q68D10 685 aaPredicted RBP13.35□□□□□ -0.27
CLN6-217ENST00000636964 SPATA32Q96LK8 384 aa13.35□□□□□ -0.27
CLN6-217ENST00000636964 BRIP1Q9BX63 1249 aa13.35□□□□□ -0.27
CLN6-217ENST00000636964 CRNKL1Q9BZJ0 848 aaKnown RBP13.35□□□□□ -0.27
CLN6-217ENST00000636964 DCP1AQ9NPI6 582 aaPredicted RBP13.35□□□□□ -0.27
CLN6-217ENST00000636964 PDS5AQ29RF7 1337 aaKnown RBP13.35□□□□□ -0.27
CLN6-217ENST00000636964 GOLGA8AA7E2F4 631 aa13.35□□□□□ -0.27
CLN6-217ENST00000636964 AP5Z1O43299 807 aa13.35□□□□□ -0.27
CLN6-217ENST00000636964 CMTR1Q8N1G2 835 aaKnown RBP13.35□□□□□ -0.27
CLN6-217ENST00000636964 RNF41Q9H4P4 317 aaPredicted RBP13.35□□□□□ -0.27
CLN6-217ENST00000636964 KLRG2A4D1S0 409 aaPredicted RBP13.34□□□□□ -0.27
CLN6-217ENST00000636964 SRGNP10124 158 aa13.34□□□□□ -0.27
CLN6-217ENST00000636964 WTAPQ15007 396 aa13.34□□□□□ -0.27
CLN6-217ENST00000636964 GPATCH11Q8N954 259 aa13.34□□□□□ -0.27
CLN6-217ENST00000636964 ZBTB9Q96C00 473 aa13.34□□□□□ -0.27
CLN6-217ENST00000636964 C8orf76Q96K31 380 aa13.34□□□□□ -0.27
CLN6-217ENST00000636964 NUP133Q8WUM0 1156 aa13.34□□□□□ -0.27
CLN6-217ENST00000636964 FBXW7Q969H0 707 aa13.34□□□□□ -0.27
CLN6-217ENST00000636964 KCNF1Q9H3M0 494 aa13.34□□□□□ -0.27
CLN6-217ENST00000636964 ZNF219Q9P2Y4 722 aaPredicted RBP13.34□□□□□ -0.27
CLN6-217ENST00000636964 CHD4Q14839 1912 aa13.34□□□□□ -0.27
CLN6-217ENST00000636964 ERICH2A1L162 156 aa13.34□□□□□ -0.27
CLN6-217ENST00000636964 RIOK3O14730 519 aaKnown RBP13.34□□□□□ -0.27
CLN6-217ENST00000636964 POLR3DP05423 398 aaPredicted RBP13.34□□□□□ -0.27
CLN6-217ENST00000636964 USP17L8P0C7I0 530 aa13.34□□□□□ -0.27
CLN6-217ENST00000636964 PDCL2Q8N4E4 241 aa13.34□□□□□ -0.27
CLN6-217ENST00000636964 SH3RF3Q8TEJ3 882 aaPredicted RBP13.34□□□□□ -0.27
CLN6-217ENST00000636964 LEO1Q8WVC0 666 aaPredicted RBP13.34□□□□□ -0.27
CLN6-217ENST00000636964 UBAC1Q9BSL1 405 aa13.34□□□□□ -0.27
CLN6-217ENST00000636964 ZSCAN16Q9H4T2 348 aaPredicted RBP13.34□□□□□ -0.27
CLN6-217ENST00000636964 FAM217BQ9NTX9 383 aaPredicted RBP13.34□□□□□ -0.27
CLN6-217ENST00000636964 PRR29P0C7W0 189 aa13.33□□□□□ -0.28
CLN6-217ENST00000636964 LIFRP42702 1097 aa13.33□□□□□ -0.28
CLN6-217ENST00000636964 SART3Q15020 963 aaKnown RBP13.33□□□□□ -0.28
CLN6-217ENST00000636964 SGMS1Q86VZ5 419 aa13.33□□□□□ -0.28
CLN6-217ENST00000636964 ESR2Q92731 530 aa13.33□□□□□ -0.28
CLN6-217ENST00000636964 MCM9Q9NXL9 1143 aa13.33□□□□□ -0.28
CLN6-217ENST00000636964 FAM47AQ5JRC9 791 aa13.33□□□□□ -0.28
CLN6-217ENST00000636964 SYNE3Q6ZMZ3 975 aa13.33□□□□□ -0.28
CLN6-217ENST00000636964 ANAPC4Q9UJX5 808 aa13.33□□□□□ -0.28
CLN6-217ENST00000636964 PYCARDQ9ULZ3 195 aa13.33□□□□□ -0.28
CLN6-217ENST00000636964 USP5P45974 858 aa13.33□□□□□ -0.28
CLN6-217ENST00000636964 MFSD14BQ5SR56 506 aa13.33□□□□□ -0.28
CLN6-217ENST00000636964 SP8Q8IXZ3 490 aa13.33□□□□□ -0.28
CLN6-217ENST00000636964 SYAP1Q96A49 352 aaPredicted RBP13.33□□□□□ -0.28
CLN6-217ENST00000636964 SCAND2PQ9GZW5 306 aaPredicted RBP13.33□□□□□ -0.28
CLN6-217ENST00000636964 TNKSO95271 1327 aa13.32□□□□□ -0.28
CLN6-217ENST00000636964 GOLGA6L4A6NEF3 574 aa13.32□□□□□ -0.28
CLN6-217ENST00000636964 ADCY5O95622 1261 aa13.32□□□□□ -0.28
CLN6-217ENST00000636964 GTF2IP78347 998 aa13.32□□□□□ -0.28
CLN6-217ENST00000636964 ILDR1Q86SU0 546 aaPredicted RBP13.32□□□□□ -0.28
CLN6-217ENST00000636964 FLAD1Q8NFF5 587 aa13.32□□□□□ -0.28
CLN6-217ENST00000636964 ATP6V0A2Q9Y487 856 aa13.32□□□□□ -0.28
CLN6-217ENST00000636964 NMT2O60551 498 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms