RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 INCENPQ9NQS7 918 aa16.69■□□□□ 0.26
CLN3-242ENST00000635958 SAP30BPQ9UHR5 308 aaKnown RBP16.69■□□□□ 0.26
CLN3-242ENST00000635958 NEDD4P46934 1319 aa16.69■□□□□ 0.26
CLN3-242ENST00000635958 GOLGA6L3A6NEY3 463 aa16.68■□□□□ 0.26
CLN3-242ENST00000635958 MCM5P33992 734 aa16.68■□□□□ 0.26
CLN3-242ENST00000635958 EVX2Q03828 476 aa16.68■□□□□ 0.26
CLN3-242ENST00000635958 PICALMQ13492 652 aa16.68■□□□□ 0.26
CLN3-242ENST00000635958 RALYLQ86SE5 291 aaKnown RBP16.68■□□□□ 0.26
CLN3-242ENST00000635958 DHX36Q9H2U1 1008 aaKnown RBP16.68■□□□□ 0.26
CLN3-242ENST00000635958 TMOD2Q9NZR1 351 aa16.68■□□□□ 0.26
CLN3-242ENST00000635958 TAOK2Q9UL54 1235 aa16.68■□□□□ 0.26
CLN3-242ENST00000635958 LAMB1P07942 1786 aa16.68■□□□□ 0.26
CLN3-242ENST00000635958 COL2A1P02458 1487 aaPredicted RBP16.68■□□□□ 0.26
CLN3-242ENST00000635958 MYO1BO43795 1136 aa16.68■□□□□ 0.26
CLN3-242ENST00000635958 DDNO94850 711 aaPredicted RBP16.68■□□□□ 0.26
CLN3-242ENST00000635958 CACNB3P54284 484 aa16.68■□□□□ 0.26
CLN3-242ENST00000635958 NBPF9Q3BBW0 867 aa16.68■□□□□ 0.26
CLN3-242ENST00000635958 ZFPM1Q8IX07 1006 aa16.68■□□□□ 0.26
CLN3-242ENST00000635958 EGFRP00533 1210 aa16.67■□□□□ 0.26
CLN3-242ENST00000635958 AK2P54819 239 aa16.67■□□□□ 0.26
CLN3-242ENST00000635958 GABPAQ06546 454 aa16.67■□□□□ 0.26
CLN3-242ENST00000635958 PDE4BQ07343 736 aa16.67■□□□□ 0.26
CLN3-242ENST00000635958 ANKRD1Q15327 319 aa16.67■□□□□ 0.26
CLN3-242ENST00000635958 SKOR2Q2VWA4 1001 aaPredicted RBP16.67■□□□□ 0.26
CLN3-242ENST00000635958 DPY19L2Q6NUT2 758 aa16.67■□□□□ 0.26
CLN3-242ENST00000635958 FAM83AQ86UY5 434 aa16.67■□□□□ 0.26
CLN3-242ENST00000635958 ZNF784Q8NCA9 323 aaPredicted RBP16.67■□□□□ 0.26
CLN3-242ENST00000635958 NKX2-3Q8TAU0 364 aa16.67■□□□□ 0.26
CLN3-242ENST00000635958 MTA3Q9BTC8 594 aa16.67■□□□□ 0.26
CLN3-242ENST00000635958 ZSWIM5Q9P217 1185 aa16.67■□□□□ 0.26
CLN3-242ENST00000635958 ATRNL1Q5VV63 1379 aa16.67■□□□□ 0.26
CLN3-242ENST00000635958 FSD2A1L4K1 749 aa16.66■□□□□ 0.26
CLN3-242ENST00000635958 B4E1Z4 1266 aa16.66■□□□□ 0.26
CLN3-242ENST00000635958 K7ELQ4 463 aaPredicted RBP16.66■□□□□ 0.26
CLN3-242ENST00000635958 ANTXR2P58335 489 aa16.66■□□□□ 0.26
CLN3-242ENST00000635958 C16orf86Q6ZW13 317 aa16.66■□□□□ 0.26
CLN3-242ENST00000635958 SAMD7Q7Z3H4 446 aa16.66■□□□□ 0.26
CLN3-242ENST00000635958 FAM151AQ8WW52 585 aa16.66■□□□□ 0.26
CLN3-242ENST00000635958 L3MBTL3Q96JM7 780 aaPredicted RBP16.66■□□□□ 0.26
CLN3-242ENST00000635958 EHD4Q9H223 541 aa16.66■□□□□ 0.26
CLN3-242ENST00000635958 CLRN2A0PK11 232 aa16.66■□□□□ 0.26
CLN3-242ENST00000635958 TOB2Q14106 344 aaPredicted RBP16.66■□□□□ 0.26
CLN3-242ENST00000635958 KIF4BQ2VIQ3 1234 aa16.66■□□□□ 0.26
CLN3-242ENST00000635958 CYB5R4Q7L1T6 521 aa16.66■□□□□ 0.26
CLN3-242ENST00000635958 SH3BP5LQ7L8J4 393 aa16.66■□□□□ 0.26
CLN3-242ENST00000635958 METTL16Q86W50 562 aaKnown RBP16.66■□□□□ 0.26
CLN3-242ENST00000635958 ESR2Q92731 530 aa16.66■□□□□ 0.26
CLN3-242ENST00000635958 ZNF287Q9HBT7 754 aa16.66■□□□□ 0.26
CLN3-242ENST00000635958 RTN4Q9NQC3 1192 aaKnown RBP16.66■□□□□ 0.26
CLN3-242ENST00000635958 PRC1O43663 620 aa16.65■□□□□ 0.26
CLN3-242ENST00000635958 KDM4AO75164 1064 aa16.65■□□□□ 0.26
CLN3-242ENST00000635958 EPS15P42566 896 aa16.65■□□□□ 0.26
CLN3-242ENST00000635958 TCP10Q12799 353 aa16.65■□□□□ 0.26
CLN3-242ENST00000635958 TBC1D10BQ4KMP7 808 aaPredicted RBP16.65■□□□□ 0.26
CLN3-242ENST00000635958 RBM26Q5T8P6 1007 aaKnown RBP16.65■□□□□ 0.26
CLN3-242ENST00000635958 Q6ZUG5 572 aa16.65■□□□□ 0.26
CLN3-242ENST00000635958 DYNLL2Q96FJ2 89 aa16.65■□□□□ 0.26
CLN3-242ENST00000635958 TCEANC2Q96MN5 208 aa16.65■□□□□ 0.26
CLN3-242ENST00000635958 PI4KBQ9UBF8 816 aa16.65■□□□□ 0.26
CLN3-242ENST00000635958 LIMCH1Q9UPQ0 1083 aa16.65■□□□□ 0.26
CLN3-242ENST00000635958 CNTNAP1P78357 1384 aa16.64■□□□□ 0.25
CLN3-242ENST00000635958 GLTPD2A6NH11 291 aa16.64■□□□□ 0.25
CLN3-242ENST00000635958 DDTLA6NHG4 134 aaPredicted RBP16.64■□□□□ 0.25
CLN3-242ENST00000635958 HLA-DOAP06340 250 aa16.64■□□□□ 0.25
CLN3-242ENST00000635958 CDK8P49336 464 aa16.64■□□□□ 0.25
CLN3-242ENST00000635958 EVCP57679 992 aa16.64■□□□□ 0.25
CLN3-242ENST00000635958 FOXP4Q8IVH2 680 aaPredicted RBP16.64■□□□□ 0.25
CLN3-242ENST00000635958 TMEM87BQ96K49 555 aa16.64■□□□□ 0.25
CLN3-242ENST00000635958 SERPINB13Q9UIV8 391 aa16.64■□□□□ 0.25
CLN3-242ENST00000635958 TCP10L2B9ZVM9 353 aa16.63■□□□□ 0.25
CLN3-242ENST00000635958 MRE11P49959 708 aa16.63■□□□□ 0.25
CLN3-242ENST00000635958 CHST3Q7LGC8 479 aa16.63■□□□□ 0.25
CLN3-242ENST00000635958 STK11IPQ8N1F8 1099 aa16.63■□□□□ 0.25
CLN3-242ENST00000635958 IGDCC4Q8TDY8 1250 aa16.63■□□□□ 0.25
CLN3-242ENST00000635958 GBP4Q96PP9 640 aa16.63■□□□□ 0.25
CLN3-242ENST00000635958 SWAP70Q9UH65 585 aa16.63■□□□□ 0.25
CLN3-242ENST00000635958 PGAP2Q9UHJ9 254 aa16.63■□□□□ 0.25
CLN3-242ENST00000635958 PRDM1O75626 825 aa16.63■□□□□ 0.25
CLN3-242ENST00000635958 SLC4A8Q2Y0W8 1093 aa16.63■□□□□ 0.25
CLN3-242ENST00000635958 RRP12Q5JTH9 1297 aaKnown RBP16.63■□□□□ 0.25
CLN3-242ENST00000635958 TMX3Q96JJ7 454 aa16.63■□□□□ 0.25
CLN3-242ENST00000635958 ZSCAN31Q96LW9 406 aaPredicted RBP16.63■□□□□ 0.25
CLN3-242ENST00000635958 ADARB2Q9NS39 739 aaKnown RBP16.63■□□□□ 0.25
CLN3-242ENST00000635958 TOMM22Q9NS69 142 aa16.63■□□□□ 0.25
CLN3-242ENST00000635958 TRAK2O60296 914 aa16.62■□□□□ 0.25
CLN3-242ENST00000635958 RASA1P20936 1047 aa16.62■□□□□ 0.25
CLN3-242ENST00000635958 LMOD1P29536 600 aaPredicted RBP16.62■□□□□ 0.25
CLN3-242ENST00000635958 DDIT3P35638 169 aa16.62■□□□□ 0.25
CLN3-242ENST00000635958 HIRAP54198 1017 aaPredicted RBP16.62■□□□□ 0.25
CLN3-242ENST00000635958 TNFAIP1Q13829 316 aa16.62■□□□□ 0.25
CLN3-242ENST00000635958 TRPM4Q8TD43 1214 aa16.62■□□□□ 0.25
CLN3-242ENST00000635958 LRRC2Q9BYS8 371 aa16.62■□□□□ 0.25
CLN3-242ENST00000635958 MKNK2Q9HBH9 465 aa16.62■□□□□ 0.25
CLN3-242ENST00000635958 VEZTQ9HBM0 779 aa16.62■□□□□ 0.25
CLN3-242ENST00000635958 RANBP6O60518 1105 aaKnown RBP16.61■□□□□ 0.25
CLN3-242ENST00000635958 LIFRP42702 1097 aa16.61■□□□□ 0.25
CLN3-242ENST00000635958 TNNI2P48788 182 aa16.61■□□□□ 0.25
CLN3-242ENST00000635958 CUL4AQ13619 759 aa16.61■□□□□ 0.25
CLN3-242ENST00000635958 ZNF444Q8N0Y2 327 aaPredicted RBP16.61■□□□□ 0.25
CLN3-242ENST00000635958 SLC44A5Q8NCS7 719 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms