RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 PRDM5Q9NQX1 630 aaPredicted RBP2.39□□□□□ -2.03
SMARCB1-209ENST00000635578 GPN3Q9UHW5 284 aaPredicted RBP2.39□□□□□ -2.03
SMARCB1-209ENST00000635578 TMEM238LA0A1B0GVL6 79 aa2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 PRR33A8MZF0 331 aa2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 H3BS24 57 aa2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 IGF2BP3O00425 579 aaKnown RBP eCLIP2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 MED14OSP0DP75 135 aa2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 GLDCP23378 1020 aa2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 HK2P52789 917 aa2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 ERVFC1P60507 584 aa2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 ORC1Q13415 861 aa2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 NFIXQ14938 502 aa2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 ZC3H12AQ5D1E8 599 aaKnown RBP2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 PPM1JQ5JR12 505 aa2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 MAP1SQ66K74 1059 aaPredicted RBP2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 DBX2Q6ZNG2 339 aa2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 TTC6Q86TZ1 520 aa2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 RNF214Q8ND24 703 aa2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 STK35Q8TDR2 534 aa2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 KRT82Q9NSB4 513 aa2.38□□□□□ -2.03
SMARCB1-209ENST00000635578 DNAJC25-GNG10A0A024R161 153 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 DCDC2CA8MYV0 355 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 RBAK-RBAKDNI3L0D1 243 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 EOMESO95936 686 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 NPR3P17342 541 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 SYN1P17600 705 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 TRHRP34981 398 aaPredicted RBP2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 ERVK-24P63145 666 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 FGD1P98174 961 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 PPP2R3AQ06190 1150 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 RPS26P11Q5JNZ5 115 aaPredicted RBP2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 DTHD1Q6ZMT9 781 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 CDC37L1Q7L3B6 337 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 ARMCX6Q7L4S7 300 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 PDZD3Q86UT5 571 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 NPAS4Q8IUM7 802 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 SULF2Q8IWU5 870 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 MFSD4AQ8N468 514 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 GPBAR1Q8TDU6 330 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 MYLIPQ8WY64 445 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 PBXIP1Q96AQ6 731 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 ALPK1Q96QP1 1244 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 SLC26A8Q96RN1 970 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 DNAJC25Q9H1X3 360 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 CBX8Q9HC52 389 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 SEMA3GQ9NS98 782 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 TMEM39AQ9NV64 488 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 ZSWIM5Q9P217 1185 aa2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 TPX2Q9ULW0 747 aaKnown RBP2.37□□□□□ -2.03
SMARCB1-209ENST00000635578 CPNE3O75131 537 aaKnown RBP2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 CBX7O95931 251 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 NTF4P34130 210 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 FCGRTP55899 365 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 KRTAP10-2P60368 255 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 DLG4P78352 724 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 FKBP4Q02790 459 aaKnown RBP eCLIP2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 PTPN12Q05209 780 aaKnown RBP2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 SF3B2Q13435 895 aaKnown RBP2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 GRM2Q14416 872 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 RALGPS1Q5JS13 557 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 PRPF40BQ6NWY9 871 aaKnown RBP2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 MPRIPQ6WCQ1 1025 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 PRRT2Q7Z6L0 340 aaPredicted RBP2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 ZNF605Q86T29 641 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 GGNQ86UU5 652 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 C12orf40Q86WS4 652 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 UBE2FQ969M7 185 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 CCDC74AQ96AQ1 378 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 CCDC120Q96HB5 630 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 RNF32Q9H0A6 362 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 BRPF3Q9ULD4 1205 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 MAPK8IP1Q9UQF2 711 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 CNTNAP4Q9C0A0 1308 aa2.36□□□□□ -2.03
SMARCB1-209ENST00000635578 TRIM13O60858 407 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 SLITRK5O94991 958 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 NEFLP07196 543 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 ARNTP27540 789 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 SSFA2P28290 1259 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 SFRP5Q5T4F7 317 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 ZBTB37Q5TC79 503 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 TCERG1LQ5VWI1 586 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 TMEM132EQ6IEE7 984 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 BAHD1Q8TBE0 780 aaPredicted RBP2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 EPS8L3Q8TE67 593 aaKnown RBP2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 KCNC2Q96PR1 638 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 MIPEPQ99797 713 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 SGPP1Q9BX95 441 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 KRTAP9-8Q9BYQ0 159 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 TMPRSS5Q9H3S3 457 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 C19orf44Q9H6X5 657 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 CNOT6Q9ULM6 557 aaKnown RBP2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 TRAK1Q9UPV9 953 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 MTMR7Q9Y216 660 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 AKAP2Q9Y2D5 859 aa2.35□□□□□ -2.03
SMARCB1-209ENST00000635578 MYOCOSA0A1B0GUC4 107 aa2.34□□□□□ -2.03
SMARCB1-209ENST00000635578 PRAMEF27A3QJZ7 478 aa2.34□□□□□ -2.03
SMARCB1-209ENST00000635578 EIF1AYO14602 144 aaKnown RBP2.34□□□□□ -2.03
SMARCB1-209ENST00000635578 SKOR2Q2VWA4 1001 aaPredicted RBP2.34□□□□□ -2.03
SMARCB1-209ENST00000635578 PI16Q6UXB8 463 aa2.34□□□□□ -2.03
SMARCB1-209ENST00000635578 CREG2Q8IUH2 290 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms