RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 OSBPL5Q9H0X9 879 aaPredicted RBP21.77■■□□□ 1.08
CLN3-239ENST00000628023 ARMT1Q9H993 441 aa21.77■■□□□ 1.08
CLN3-239ENST00000628023 FLT1P17948 1338 aa21.77■■□□□ 1.07
CLN3-239ENST00000628023 NPM3O75607 178 aaKnown RBP21.76■■□□□ 1.07
CLN3-239ENST00000628023 DCAF15Q66K64 600 aa21.76■■□□□ 1.07
CLN3-239ENST00000628023 LCORLQ8N3X6 602 aa21.76■■□□□ 1.07
CLN3-239ENST00000628023 TTC22Q5TAA0 569 aa21.75■■□□□ 1.07
CLN3-239ENST00000628023 FBXO46Q6PJ61 603 aaPredicted RBP21.75■■□□□ 1.07
CLN3-239ENST00000628023 PUS7LQ9H0K6 701 aaKnown RBP21.74■■□□□ 1.07
CLN3-239ENST00000628023 CSADQ9Y600 493 aa21.74■■□□□ 1.07
CLN3-239ENST00000628023 DDTLA6NHG4 134 aaPredicted RBP21.73■■□□□ 1.07
CLN3-239ENST00000628023 MAP3K9P80192 1104 aa21.73■■□□□ 1.07
CLN3-239ENST00000628023 MIGA2Q7L4E1 593 aa21.73■■□□□ 1.07
CLN3-239ENST00000628023 OPTNQ96CV9 577 aa21.73■■□□□ 1.07
CLN3-239ENST00000628023 R3HDMLQ9H3Y0 253 aa21.73■■□□□ 1.07
CLN3-239ENST00000628023 ELP3Q9H9T3 547 aa21.73■■□□□ 1.07
CLN3-239ENST00000628023 SAP30BPQ9UHR5 308 aaKnown RBP21.73■■□□□ 1.07
CLN3-239ENST00000628023 COL2A1P02458 1487 aaPredicted RBP21.72■■□□□ 1.07
CLN3-239ENST00000628023 FOCADQ5VW36 1801 aa21.72■■□□□ 1.07
CLN3-239ENST00000628023 IGF2BP3O00425 579 aaKnown RBP eCLIP21.72■■□□□ 1.07
CLN3-239ENST00000628023 SH3BP5LQ7L8J4 393 aa21.72■■□□□ 1.07
CLN3-239ENST00000628023 SDR42E1Q8WUS8 393 aa21.72■■□□□ 1.07
CLN3-239ENST00000628023 OSBP2Q969R2 916 aa21.72■■□□□ 1.07
CLN3-239ENST00000628023 DDRGK1Q96HY6 314 aa21.72■■□□□ 1.07
CLN3-239ENST00000628023 ZNF341Q9BYN7 854 aa21.72■■□□□ 1.07
CLN3-239ENST00000628023 DHX36Q9H2U1 1008 aaKnown RBP21.72■■□□□ 1.07
CLN3-239ENST00000628023 SLC4A4Q9Y6R1 1079 aa21.72■■□□□ 1.07
CLN3-239ENST00000628023 CDK5RAP2Q96SN8 1893 aa21.72■■□□□ 1.07
CLN3-239ENST00000628023 ATRNL1Q5VV63 1379 aa21.72■■□□□ 1.07
CLN3-239ENST00000628023 M0R2C6 588 aa21.71■■□□□ 1.07
CLN3-239ENST00000628023 HLA-DOAP06340 250 aa21.71■■□□□ 1.07
CLN3-239ENST00000628023 SLC4A8Q2Y0W8 1093 aa21.71■■□□□ 1.07
CLN3-239ENST00000628023 ZMYM1Q5SVZ6 1142 aa21.71■■□□□ 1.07
CLN3-239ENST00000628023 TRIM34Q9BYJ4 488 aa21.71■■□□□ 1.07
CLN3-239ENST00000628023 GPAA1O43292 621 aa21.7■■□□□ 1.06
CLN3-239ENST00000628023 GSPT1P15170 499 aaKnown RBP21.7■■□□□ 1.06
CLN3-239ENST00000628023 GJA5P36382 358 aa21.7■■□□□ 1.06
CLN3-239ENST00000628023 SKAP1Q86WV1 359 aa21.7■■□□□ 1.06
CLN3-239ENST00000628023 TICAM2Q86XR7 235 aa21.7■■□□□ 1.06
CLN3-239ENST00000628023 ERO1AQ96HE7 468 aa21.7■■□□□ 1.06
CLN3-239ENST00000628023 WRNIP1Q96S55 665 aa21.7■■□□□ 1.06
CLN3-239ENST00000628023 PALD1Q9ULE6 856 aa21.7■■□□□ 1.06
CLN3-239ENST00000628023 NAV1Q8NEY1 1877 aa21.7■■□□□ 1.06
CLN3-239ENST00000628023 TESPA1A2RU30 521 aaPredicted RBP21.69■■□□□ 1.06
CLN3-239ENST00000628023 PRKAB2O43741 272 aa21.69■■□□□ 1.06
CLN3-239ENST00000628023 POLR3DP05423 398 aaPredicted RBP21.69■■□□□ 1.06
CLN3-239ENST00000628023 GTF2A2P52657 109 aa21.69■■□□□ 1.06
CLN3-239ENST00000628023 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.69■■□□□ 1.06
CLN3-239ENST00000628023 CRACR2BQ8N4Y2 399 aaPredicted RBP21.69■■□□□ 1.06
CLN3-239ENST00000628023 SEC62Q99442 399 aaKnown RBP21.69■■□□□ 1.06
CLN3-239ENST00000628023 DIAPH3Q9NSV4 1193 aa21.69■■□□□ 1.06
CLN3-239ENST00000628023 MCM9Q9NXL9 1143 aa21.69■■□□□ 1.06
CLN3-239ENST00000628023 PI4KBQ9UBF8 816 aa21.69■■□□□ 1.06
CLN3-239ENST00000628023 TRIM17Q9Y577 477 aa21.69■■□□□ 1.06
CLN3-239ENST00000628023 HIP1O00291 1037 aa21.68■■□□□ 1.06
CLN3-239ENST00000628023 SDSP20132 328 aa21.68■■□□□ 1.06
CLN3-239ENST00000628023 CRHR2Q13324 411 aa21.68■■□□□ 1.06
CLN3-239ENST00000628023 VGLL4Q14135 290 aa21.68■■□□□ 1.06
CLN3-239ENST00000628023 AMOTL1Q8IY63 956 aa21.68■■□□□ 1.06
CLN3-239ENST00000628023 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.68■■□□□ 1.06
CLN3-239ENST00000628023 STRBPQ96SI9 672 aaKnown RBP21.68■■□□□ 1.06
CLN3-239ENST00000628023 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.68■■□□□ 1.06
CLN3-239ENST00000628023 DCP1AQ9NPI6 582 aaPredicted RBP21.68■■□□□ 1.06
CLN3-239ENST00000628023 ATP8A2Q9NTI2 1148 aa21.68■■□□□ 1.06
CLN3-239ENST00000628023 MYH1P12882 1939 aa21.67■■□□□ 1.06
CLN3-239ENST00000628023 LAMB1P07942 1786 aa21.67■■□□□ 1.06
CLN3-239ENST00000628023 GNAT2P19087 354 aa21.67■■□□□ 1.06
CLN3-239ENST00000628023 NMIQ13287 307 aaPredicted RBP21.67■■□□□ 1.06
CLN3-239ENST00000628023 FAM227BQ96M60 508 aa21.67■■□□□ 1.06
CLN3-239ENST00000628023 HELLSQ9NRZ9 838 aa21.67■■□□□ 1.06
CLN3-239ENST00000628023 PDE4DIPQ5VU43 2346 aa21.66■■□□□ 1.06
CLN3-239ENST00000628023 CCL15-CCL14A0A0B4J2E2 113 aa21.66■■□□□ 1.06
CLN3-239ENST00000628023 A0A0D9SFI3 127 aa21.66■■□□□ 1.06
CLN3-239ENST00000628023 FAM196BA6NMK8 535 aa21.66■■□□□ 1.06
CLN3-239ENST00000628023 APPP05067 770 aa21.66■■□□□ 1.06
CLN3-239ENST00000628023 ARHGEF6Q15052 776 aa21.66■■□□□ 1.06
CLN3-239ENST00000628023 CCL15Q16663 113 aa21.66■■□□□ 1.06
CLN3-239ENST00000628023 OTOP1Q7RTM1 612 aa21.66■■□□□ 1.06
CLN3-239ENST00000628023 TTC6Q86TZ1 520 aa21.66■■□□□ 1.06
CLN3-239ENST00000628023 OTUD5Q96G74 571 aa21.66■■□□□ 1.06
CLN3-239ENST00000628023 MS4A4AQ96JQ5 239 aa21.66■■□□□ 1.06
CLN3-239ENST00000628023 PTPN18Q99952 460 aa21.66■■□□□ 1.06
CLN3-239ENST00000628023 HERC5Q9UII4 1024 aaKnown RBP21.66■■□□□ 1.06
CLN3-239ENST00000628023 OTOFQ9HC10 1997 aa21.65■■□□□ 1.06
CLN3-239ENST00000628023 SP3Q02447 781 aa21.65■■□□□ 1.06
CLN3-239ENST00000628023 MCMDC2Q4G0Z9 681 aa21.65■■□□□ 1.06
CLN3-239ENST00000628023 CCDC129Q6ZRS4 1044 aa21.65■■□□□ 1.06
CLN3-239ENST00000628023 ERO1BQ86YB8 467 aa21.65■■□□□ 1.06
CLN3-239ENST00000628023 ZFYVE28Q9HCC9 887 aa21.65■■□□□ 1.06
CLN3-239ENST00000628023 DDX60LQ5H9U9 1706 aaKnown RBP21.64■■□□□ 1.06
CLN3-239ENST00000628023 SPDYE5A6NIY4 337 aa21.64■■□□□ 1.05
CLN3-239ENST00000628023 TBC1D12O60347 775 aa21.64■■□□□ 1.05
CLN3-239ENST00000628023 SLURP2P0DP57 97 aa21.64■■□□□ 1.05
CLN3-239ENST00000628023 TDO2P48775 406 aa21.64■■□□□ 1.05
CLN3-239ENST00000628023 TAF1CQ15572 869 aaPredicted RBP21.64■■□□□ 1.05
CLN3-239ENST00000628023 CWC27Q6UX04 472 aaKnown RBP21.64■■□□□ 1.05
CLN3-239ENST00000628023 CD99L2Q8TCZ2 262 aa21.64■■□□□ 1.05
CLN3-239ENST00000628023 CNKSR2Q8WXI2 1034 aa21.64■■□□□ 1.05
CLN3-239ENST00000628023 NACAP1Q9BZK3 213 aa21.64■■□□□ 1.05
CLN3-239ENST00000628023 CETPP11597 493 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms