RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 ZSCAN29Q8IWY8 852 aaPredicted RBP17.5■□□□□ 0.39
SNX1-214ENST00000625244 SUCLG2Q96I99 432 aa17.5■□□□□ 0.39
SNX1-214ENST00000625244 C9orf78Q9NZ63 289 aaPredicted RBP17.5■□□□□ 0.39
SNX1-214ENST00000625244 MAST2Q6P0Q8 1798 aa17.5■□□□□ 0.39
SNX1-214ENST00000625244 CHD9Q3L8U1 2897 aa17.49■□□□□ 0.39
SNX1-214ENST00000625244 HMGCS2P54868 508 aa17.49■□□□□ 0.39
SNX1-214ENST00000625244 SOCS4Q8WXH5 440 aa17.49■□□□□ 0.39
SNX1-214ENST00000625244 USP6NLQ92738 828 aa17.49■□□□□ 0.39
SNX1-214ENST00000625244 IDI2Q9BXS1 227 aa17.49■□□□□ 0.39
SNX1-214ENST00000625244 DOCK1Q14185 1865 aa17.49■□□□□ 0.39
SNX1-214ENST00000625244 LTBP2Q14767 1821 aa17.49■□□□□ 0.39
SNX1-214ENST00000625244 DOCK2Q92608 1830 aa17.49■□□□□ 0.39
SNX1-214ENST00000625244 FGFR2P21802 821 aa17.48■□□□□ 0.39
SNX1-214ENST00000625244 ZEB1P37275 1124 aaPredicted RBP17.48■□□□□ 0.39
SNX1-214ENST00000625244 RTP1P59025 263 aa17.48■□□□□ 0.39
SNX1-214ENST00000625244 PABPC4Q13310 644 aaKnown RBP eCLIP17.48■□□□□ 0.39
SNX1-214ENST00000625244 GRIN2CQ14957 1233 aa17.48■□□□□ 0.39
SNX1-214ENST00000625244 TRMT44Q8IYL2 757 aaKnown RBP17.48■□□□□ 0.39
SNX1-214ENST00000625244 TXNRD2Q9NNW7 524 aa17.48■□□□□ 0.39
SNX1-214ENST00000625244 KIF16BQ96L93 1317 aa17.47■□□□□ 0.39
SNX1-214ENST00000625244 ZNF280CQ8ND82 737 aa17.47■□□□□ 0.39
SNX1-214ENST00000625244 BADQ92934 168 aa17.47■□□□□ 0.39
SNX1-214ENST00000625244 DDX4Q9NQI0 724 aaKnown RBP17.47■□□□□ 0.39
SNX1-214ENST00000625244 RFX7Q2KHR2 1363 aa17.47■□□□□ 0.39
SNX1-214ENST00000625244 PIEZO1Q92508 2521 aa17.46■□□□□ 0.39
SNX1-214ENST00000625244 FAM196BA6NMK8 535 aa17.46■□□□□ 0.39
SNX1-214ENST00000625244 LDHBP07195 334 aaKnown RBP17.46■□□□□ 0.39
SNX1-214ENST00000625244 IFIT1P09914 478 aaKnown RBP17.46■□□□□ 0.39
SNX1-214ENST00000625244 KLHDC4Q8TBB5 520 aa17.46■□□□□ 0.39
SNX1-214ENST00000625244 P2RX7Q99572 595 aaKnown RBP17.46■□□□□ 0.39
SNX1-214ENST00000625244 ATP11BQ9Y2G3 1177 aa17.46■□□□□ 0.39
SNX1-214ENST00000625244 LOC285556D6RIA3 1793 aa17.45■□□□□ 0.38
SNX1-214ENST00000625244 REV3LO60673 3130 aa17.45■□□□□ 0.38
SNX1-214ENST00000625244 PDE3AQ14432 1141 aa17.45■□□□□ 0.38
SNX1-214ENST00000625244 PUM3Q15397 648 aaKnown RBP17.45■□□□□ 0.38
SNX1-214ENST00000625244 MORN1Q5T089 497 aa17.45■□□□□ 0.38
SNX1-214ENST00000625244 GPRC5AQ8NFJ5 357 aa17.45■□□□□ 0.38
SNX1-214ENST00000625244 ADAMTS19Q8TE59 1207 aa17.45■□□□□ 0.38
SNX1-214ENST00000625244 PRDM5Q9NQX1 630 aaPredicted RBP17.45■□□□□ 0.38
SNX1-214ENST00000625244 NBPF7P0C2Y1 421 aaPredicted RBP17.44■□□□□ 0.38
SNX1-214ENST00000625244 RGS2P41220 211 aa17.44■□□□□ 0.38
SNX1-214ENST00000625244 PICALMQ13492 652 aa17.44■□□□□ 0.38
SNX1-214ENST00000625244 Q3C1V9 767 aa17.44■□□□□ 0.38
SNX1-214ENST00000625244 SH3D19Q5HYK7 790 aa17.44■□□□□ 0.38
SNX1-214ENST00000625244 PORCNQ9H237 461 aa17.44■□□□□ 0.38
SNX1-214ENST00000625244 BICC1Q9H694 974 aaKnown RBP17.44■□□□□ 0.38
SNX1-214ENST00000625244 DNM1LO00429 736 aa17.43■□□□□ 0.38
SNX1-214ENST00000625244 TBC1D12O60347 775 aa17.43■□□□□ 0.38
SNX1-214ENST00000625244 VAMP4O75379 141 aa17.43■□□□□ 0.38
SNX1-214ENST00000625244 MAPK4P31152 587 aa17.43■□□□□ 0.38
SNX1-214ENST00000625244 IRX3P78415 501 aaPredicted RBP17.43■□□□□ 0.38
SNX1-214ENST00000625244 RRP1BQ14684 758 aaKnown RBP17.43■□□□□ 0.38
SNX1-214ENST00000625244 ATXN2LQ8WWM7 1075 aaKnown RBP17.43■□□□□ 0.38
SNX1-214ENST00000625244 ASB2Q96Q27 587 aa17.43■□□□□ 0.38
SNX1-214ENST00000625244 APBA2Q99767 749 aa17.43■□□□□ 0.38
SNX1-214ENST00000625244 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.43■□□□□ 0.38
SNX1-214ENST00000625244 RBPJLQ9UBG7 517 aa17.43■□□□□ 0.38
SNX1-214ENST00000625244 DDX20Q9UHI6 824 aaKnown RBP17.43■□□□□ 0.38
SNX1-214ENST00000625244 GAKO14976 1311 aa17.43■□□□□ 0.38
SNX1-214ENST00000625244 CHD7Q9P2D1 2997 aa17.42■□□□□ 0.38
SNX1-214ENST00000625244 ALDH1L1O75891 902 aa17.42■□□□□ 0.38
SNX1-214ENST00000625244 RABL6Q3YEC7 729 aaPredicted RBP17.42■□□□□ 0.38
SNX1-214ENST00000625244 GPR142Q7Z601 462 aa17.42■□□□□ 0.38
SNX1-214ENST00000625244 SH3RF1Q7Z6J0 888 aa17.42■□□□□ 0.38
SNX1-214ENST00000625244 ANKRD44Q8N8A2 993 aa17.42■□□□□ 0.38
SNX1-214ENST00000625244 PPM1EQ8WY54 764 aa17.42■□□□□ 0.38
SNX1-214ENST00000625244 LPAR1Q92633 364 aa17.42■□□□□ 0.38
SNX1-214ENST00000625244 UHRF1Q96T88 793 aaPredicted RBP17.42■□□□□ 0.38
SNX1-214ENST00000625244 FLRT1Q9NZU1 646 aa17.42■□□□□ 0.38
SNX1-214ENST00000625244 FRMPD3Q5JV73 1810 aa17.42■□□□□ 0.38
SNX1-214ENST00000625244 TRIM43BA6NCK2 446 aa17.41■□□□□ 0.38
SNX1-214ENST00000625244 HERVK_113P62684 666 aa17.41■□□□□ 0.38
SNX1-214ENST00000625244 POTEEQ6S8J3 1075 aa17.41■□□□□ 0.38
SNX1-214ENST00000625244 SLC39A5Q6ZMH5 540 aa17.41■□□□□ 0.38
SNX1-214ENST00000625244 PLEKHH3Q7Z736 793 aa17.41■□□□□ 0.38
SNX1-214ENST00000625244 TRIM43Q96BQ3 446 aaPredicted RBP17.41■□□□□ 0.38
SNX1-214ENST00000625244 OSBPL5Q9H0X9 879 aaPredicted RBP17.41■□□□□ 0.38
SNX1-214ENST00000625244 PDLIM7Q9NR12 457 aa17.41■□□□□ 0.38
SNX1-214ENST00000625244 SALL1Q9NSC2 1324 aa17.41■□□□□ 0.38
SNX1-214ENST00000625244 USP17L5A8MUK1 530 aa17.4■□□□□ 0.38
SNX1-214ENST00000625244 SLC5A1P13866 664 aa17.4■□□□□ 0.38
SNX1-214ENST00000625244 HOXA7P31268 230 aaPredicted RBP17.4■□□□□ 0.38
SNX1-214ENST00000625244 EPHB4P54760 987 aa17.4■□□□□ 0.38
SNX1-214ENST00000625244 ERVK-9P63128 1117 aa17.4■□□□□ 0.38
SNX1-214ENST00000625244 ERVK-24P63145 666 aa17.4■□□□□ 0.38
SNX1-214ENST00000625244 TRIM60Q495X7 471 aa17.4■□□□□ 0.38
SNX1-214ENST00000625244 GJC2Q5T442 439 aaPredicted RBP17.4■□□□□ 0.38
SNX1-214ENST00000625244 SLC4A10Q6U841 1118 aa17.4■□□□□ 0.38
SNX1-214ENST00000625244 LPIN2Q92539 896 aa17.4■□□□□ 0.38
SNX1-214ENST00000625244 RNPC3Q96LT9 517 aaKnown RBP17.4■□□□□ 0.38
SNX1-214ENST00000625244 TBC1D2Q9BYX2 928 aa17.4■□□□□ 0.38
SNX1-214ENST00000625244 SRCIN1Q9C0H9 1055 aa17.4■□□□□ 0.38
SNX1-214ENST00000625244 CACNA1FO60840 1977 aa17.39■□□□□ 0.37
SNX1-214ENST00000625244 CNGA1P29973 690 aa17.39■□□□□ 0.37
SNX1-214ENST00000625244 CAP2P40123 477 aa17.39■□□□□ 0.37
SNX1-214ENST00000625244 MAP2K5Q13163 448 aa17.39■□□□□ 0.37
SNX1-214ENST00000625244 MTMR2Q13614 643 aa17.39■□□□□ 0.37
SNX1-214ENST00000625244 MFSD14CQ5VZR4 134 aa17.39■□□□□ 0.37
SNX1-214ENST00000625244 WWC1Q8IX03 1113 aa17.39■□□□□ 0.37
SNX1-214ENST00000625244 CCAR1Q8IX12 1150 aaKnown RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms