RNA–Protein interactions for RNA: ENST00000616010.4

CCND3-223, Transcript of cyclin D3, human

TSL 5 BASIC

Gene CCND3, Length 2,047 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCND3-223	ENST00000616010	FAM198A	Q9UFP1	575 aa		27.67	■■■□□ 2.02
CCND3-223	ENST00000616010	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	27.67	■■■□□ 2.02
CCND3-223	ENST00000616010	WDR19	Q8NEZ3	1342 aa		27.66	■■■□□ 2.02
CCND3-223	ENST00000616010	CLRN2	A0PK11	232 aa		27.66	■■■□□ 2.02
CCND3-223	ENST00000616010	GPC2	Q8N158	579 aa		27.66	■■■□□ 2.02
CCND3-223	ENST00000616010	TMOD2	Q9NZR1	351 aa		27.66	■■■□□ 2.02
CCND3-223	ENST00000616010	ZSWIM5	Q9P217	1185 aa		27.66	■■■□□ 2.02
CCND3-223	ENST00000616010	MMP14	P50281	582 aa		27.65	■■■□□ 2.02
CCND3-223	ENST00000616010	ESR2	Q92731	530 aa		27.65	■■■□□ 2.02
CCND3-223	ENST00000616010	TPCN1	Q9ULQ1	816 aa		27.65	■■■□□ 2.02
CCND3-223	ENST00000616010	CNOT7	Q9UIV1	285 aa	Known RBP	27.65	■■■□□ 2.02
CCND3-223	ENST00000616010	WNT10B	O00744	389 aa		27.64	■■■□□ 2.02
CCND3-223	ENST00000616010	LARGE1	O95461	756 aa		27.64	■■■□□ 2.02
CCND3-223	ENST00000616010	ZFPM1	Q8IX07	1006 aa		27.64	■■■□□ 2.02
CCND3-223	ENST00000616010	ZBED3	Q96IU2	234 aa	Predicted RBP	27.64	■■■□□ 2.02
CCND3-223	ENST00000616010	AGXT2	Q9BYV1	514 aa		27.64	■■■□□ 2.02
CCND3-223	ENST00000616010	GPHN	Q9NQX3	736 aa	Predicted RBP	27.64	■■■□□ 2.02
CCND3-223	ENST00000616010	ZNF70	Q9UC06	446 aa	Predicted RBP	27.64	■■■□□ 2.02
CCND3-223	ENST00000616010	ORC4	O43929	436 aa		27.63	■■■□□ 2.01
CCND3-223	ENST00000616010	RANBP6	O60518	1105 aa	Known RBP	27.63	■■■□□ 2.01
CCND3-223	ENST00000616010	SPDYE2	Q495Y8	402 aa		27.63	■■■□□ 2.01
CCND3-223	ENST00000616010	TTC6	Q86TZ1	520 aa		27.63	■■■□□ 2.01
CCND3-223	ENST00000616010	SLC44A5	Q8NCS7	719 aa		27.63	■■■□□ 2.01
CCND3-223	ENST00000616010	FOXD4L1	Q9NU39	408 aa		27.63	■■■□□ 2.01
CCND3-223	ENST00000616010	MYO1B	O43795	1136 aa		27.63	■■■□□ 2.01
CCND3-223	ENST00000616010	GRIN3B	O60391	1043 aa		27.63	■■■□□ 2.01
CCND3-223	ENST00000616010	NPM3	O75607	178 aa	Known RBP	27.63	■■■□□ 2.01
CCND3-223	ENST00000616010	EGFR	P00533	1210 aa		27.63	■■■□□ 2.01
CCND3-223	ENST00000616010	NBPF9	Q3BBW0	867 aa		27.63	■■■□□ 2.01
CCND3-223	ENST00000616010	RBM26	Q5T8P6	1007 aa	Known RBP	27.63	■■■□□ 2.01
CCND3-223	ENST00000616010	ME3	Q16798	604 aa		27.62	■■■□□ 2.01
CCND3-223	ENST00000616010	C16orf86	Q6ZW13	317 aa		27.62	■■■□□ 2.01
CCND3-223	ENST00000616010	SAMD7	Q7Z3H4	446 aa		27.62	■■■□□ 2.01
CCND3-223	ENST00000616010	FBXL16	Q8N461	479 aa		27.62	■■■□□ 2.01
CCND3-223	ENST00000616010	VEZT	Q9HBM0	779 aa		27.62	■■■□□ 2.01
CCND3-223	ENST00000616010	TCP10L2	B9ZVM9	353 aa		27.61	■■■□□ 2.01
CCND3-223	ENST00000616010	HLA-DOA	P06340	250 aa		27.61	■■■□□ 2.01
CCND3-223	ENST00000616010	APOBR	Q0VD83	1088 aa		27.61	■■■□□ 2.01
CCND3-223	ENST00000616010	TMEM87B	Q96K49	555 aa		27.61	■■■□□ 2.01
CCND3-223	ENST00000616010	ZSCAN31	Q96LW9	406 aa	Predicted RBP	27.61	■■■□□ 2.01
CCND3-223	ENST00000616010	ZKSCAN3	Q9BRR0	538 aa		27.61	■■■□□ 2.01
CCND3-223	ENST00000616010	SLK	Q9H2G2	1235 aa	Predicted RBP	27.61	■■■□□ 2.01
CCND3-223	ENST00000616010	MKNK2	Q9HBH9	465 aa		27.61	■■■□□ 2.01
CCND3-223	ENST00000616010	SIPA1L1	O43166	1804 aa		27.61	■■■□□ 2.01
CCND3-223	ENST00000616010	SH2B2	O14492	632 aa	Predicted RBP	27.6	■■■□□ 2.01
CCND3-223	ENST00000616010	ENTPD3	O75355	529 aa		27.6	■■■□□ 2.01
CCND3-223	ENST00000616010	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	27.6	■■■□□ 2.01
CCND3-223	ENST00000616010	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	27.6	■■■□□ 2.01
CCND3-223	ENST00000616010	SH2B1	Q9NRF2	756 aa	Predicted RBP	27.6	■■■□□ 2.01
CCND3-223	ENST00000616010	ANGEL1	Q9UNK9	670 aa	Known RBP	27.6	■■■□□ 2.01
CCND3-223	ENST00000616010	DHX36	Q9H2U1	1008 aa	Known RBP	27.6	■■■□□ 2.01
CCND3-223	ENST00000616010	ZNF287	Q9HBT7	754 aa		27.6	■■■□□ 2.01
CCND3-223	ENST00000616010	GPRC5D	Q9NZD1	345 aa		27.6	■■■□□ 2.01
CCND3-223	ENST00000616010	MYH8	P13535	1937 aa		27.59	■■■□□ 2.01
CCND3-223	ENST00000616010	DDTL	A6NHG4	134 aa	Predicted RBP	27.59	■■■□□ 2.01
CCND3-223	ENST00000616010	IFIT3	O14879	490 aa	Known RBP	27.59	■■■□□ 2.01
CCND3-223	ENST00000616010	DDN	O94850	711 aa	Predicted RBP	27.59	■■■□□ 2.01
CCND3-223	ENST00000616010	CDK8	P49336	464 aa		27.59	■■■□□ 2.01
CCND3-223	ENST00000616010	KIF4B	Q2VIQ3	1234 aa		27.59	■■■□□ 2.01
CCND3-223	ENST00000616010	TMEM67	Q5HYA8	995 aa		27.59	■■■□□ 2.01
CCND3-223	ENST00000616010		H7C1D1	291 aa		27.58	■■■□□ 2.01
CCND3-223	ENST00000616010	CUL4A	Q13619	759 aa		27.58	■■■□□ 2.01
CCND3-223	ENST00000616010	SART3	Q15020	963 aa	Known RBP	27.58	■■■□□ 2.01
CCND3-223	ENST00000616010	FAM47A	Q5JRC9	791 aa		27.58	■■■□□ 2.01
CCND3-223	ENST00000616010	SH3BP5L	Q7L8J4	393 aa		27.58	■■■□□ 2.01
CCND3-223	ENST00000616010	UBAC1	Q9BSL1	405 aa		27.58	■■■□□ 2.01
CCND3-223	ENST00000616010	SERPINB13	Q9UIV8	391 aa		27.58	■■■□□ 2.01
CCND3-223	ENST00000616010	COL2A1	P02458	1487 aa	Predicted RBP	27.58	■■■□□ 2.01
CCND3-223	ENST00000616010	STK3	Q13188	491 aa		27.58	■■■□□ 2.01
CCND3-223	ENST00000616010	IGDCC4	Q8TDY8	1250 aa		27.58	■■■□□ 2.01
CCND3-223	ENST00000616010	ATRNL1	Q5VV63	1379 aa		27.57	■■■□□ 2
CCND3-223	ENST00000616010	TSPY2	A6NKD2	308 aa		27.57	■■■□□ 2
CCND3-223	ENST00000616010	GABPA	Q06546	454 aa		27.57	■■■□□ 2
CCND3-223	ENST00000616010	LY9	Q9HBG7	655 aa		27.57	■■■□□ 2
CCND3-223	ENST00000616010	NAP1L2	Q9ULW6	460 aa	Predicted RBP	27.57	■■■□□ 2
CCND3-223	ENST00000616010	ERICH2	A1L162	156 aa		27.57	■■■□□ 2
CCND3-223	ENST00000616010	CCDC83	Q8IWF9	413 aa		27.57	■■■□□ 2
CCND3-223	ENST00000616010	NECAB1	Q8N987	351 aa		27.57	■■■□□ 2
CCND3-223	ENST00000616010	CNTNAP1	P78357	1384 aa		27.56	■■■□□ 2
CCND3-223	ENST00000616010	TNKS	O95271	1327 aa		27.56	■■■□□ 2
CCND3-223	ENST00000616010	RASA1	P20936	1047 aa		27.56	■■■□□ 2
CCND3-223	ENST00000616010	FKBP1C	Q5VVH2	108 aa		27.56	■■■□□ 2
CCND3-223	ENST00000616010	IQCA1	Q86XH1	822 aa		27.56	■■■□□ 2
CCND3-223	ENST00000616010	EHD4	Q9H223	541 aa		27.56	■■■□□ 2
CCND3-223	ENST00000616010	SENP2	Q9HC62	589 aa		27.56	■■■□□ 2
CCND3-223	ENST00000616010	ST3GAL1	Q11201	340 aa		27.55	■■■□□ 2
CCND3-223	ENST00000616010	ZNF444	Q8N0Y2	327 aa	Predicted RBP	27.55	■■■□□ 2
CCND3-223	ENST00000616010	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	27.55	■■■□□ 2
CCND3-223	ENST00000616010	MTA3	Q9BTC8	594 aa		27.55	■■■□□ 2
CCND3-223	ENST00000616010	KLF18	A0A0U1RQI7	1052 aa		27.55	■■■□□ 2
CCND3-223	ENST00000616010	NT5C2	P49902	561 aa		27.55	■■■□□ 2
CCND3-223	ENST00000616010	PI4KB	Q9UBF8	816 aa		27.55	■■■□□ 2
CCND3-223	ENST00000616010	BRPF3	Q9ULD4	1205 aa		27.55	■■■□□ 2
CCND3-223	ENST00000616010	EPS15	P42566	896 aa		27.54	■■■□□ 2
CCND3-223	ENST00000616010	TFAP4	Q01664	338 aa		27.54	■■■□□ 2
CCND3-223	ENST00000616010	WTAP	Q15007	396 aa		27.54	■■■□□ 2
CCND3-223	ENST00000616010	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	27.54	■■■□□ 2
CCND3-223	ENST00000616010	TRPM4	Q8TD43	1214 aa		27.54	■■■□□ 2
CCND3-223	ENST00000616010	FAM151A	Q8WW52	585 aa		27.54	■■■□□ 2
CCND3-223	ENST00000616010	SWAP70	Q9UH65	585 aa		27.54	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms