RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 CACNA1FO60840 1977 aa11.6□□□□□ -0.55
VPS39-214ENST00000614932 KDM4FA0A1W2PPD8 638 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 GBP2P32456 591 aaPredicted RBP11.59□□□□□ -0.55
VPS39-214ENST00000614932 PTH1RQ03431 593 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 KCNB1Q14721 858 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 HSP90AB4PQ58FF6 505 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 OR8K1Q8NGG5 319 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 FAM227BQ96M60 508 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 MMTAG2Q9BU76 263 aaKnown RBP11.59□□□□□ -0.55
VPS39-214ENST00000614932 METTL22Q9BUU2 404 aaPredicted RBP11.59□□□□□ -0.55
VPS39-214ENST00000614932 GBP3Q9H0R5 595 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 ECHDC1Q9NTX5 307 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 BLOC1S6Q9UL45 172 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 MTMR6Q9Y217 621 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 PHRF1Q9P1Y6 1649 aaKnown RBP11.59□□□□□ -0.55
VPS39-214ENST00000614932 KIF1AQ12756 1690 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 NBPF26B4DH59 902 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 NBPF14Q5TI25 921 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 RBM12BQ8IXT5 1001 aaKnown RBP11.59□□□□□ -0.55
VPS39-214ENST00000614932 NBPF15Q8N660 670 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 MAGEC3Q8TD91 643 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 SMARCC1Q92922 1105 aaPredicted RBP11.59□□□□□ -0.55
VPS39-214ENST00000614932 ANKZF1Q9H8Y5 726 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 SUGCTQ9HAC7 445 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 ARHGAP25P42331 645 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 IRAK1P51617 712 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 C11orf57Q6ZUT1 292 aaPredicted RBP11.59□□□□□ -0.55
VPS39-214ENST00000614932 CCDC50Q8IVM0 306 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 TMTC2Q8N394 836 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 MSANTD4Q8NCY6 345 aa11.59□□□□□ -0.55
VPS39-214ENST00000614932 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.59□□□□□ -0.55
VPS39-214ENST00000614932 GLRX3O76003 335 aaKnown RBP11.58□□□□□ -0.56
VPS39-214ENST00000614932 PRPF6O94906 941 aaKnown RBP11.58□□□□□ -0.56
VPS39-214ENST00000614932 COL9A3Q14050 684 aaPredicted RBP11.58□□□□□ -0.56
VPS39-214ENST00000614932 B4GALNT4Q76KP1 1039 aa11.58□□□□□ -0.56
VPS39-214ENST00000614932 SPATS2Q86XZ4 545 aaKnown RBP11.58□□□□□ -0.56
VPS39-214ENST00000614932 BCAS4Q8TDM0 211 aa11.58□□□□□ -0.56
VPS39-214ENST00000614932 EZH1Q92800 747 aaPredicted RBP11.58□□□□□ -0.56
VPS39-214ENST00000614932 MAF1Q9H063 256 aa11.58□□□□□ -0.56
VPS39-214ENST00000614932 CDHR2Q9BYE9 1310 aa11.58□□□□□ -0.56
VPS39-214ENST00000614932 ZSCAN12O43309 604 aa11.58□□□□□ -0.56
VPS39-214ENST00000614932 RASSF9O75901 435 aa11.58□□□□□ -0.56
VPS39-214ENST00000614932 AARSP49588 968 aaKnown RBP eCLIP11.58□□□□□ -0.56
VPS39-214ENST00000614932 CDR1P51861 262 aa11.58□□□□□ -0.56
VPS39-214ENST00000614932 MTX1Q13505 466 aa11.58□□□□□ -0.56
VPS39-214ENST00000614932 SNCBQ16143 134 aa11.58□□□□□ -0.56
VPS39-214ENST00000614932 STX1AQ16623 288 aa11.58□□□□□ -0.56
VPS39-214ENST00000614932 TMEM132AQ24JP5 1023 aa11.58□□□□□ -0.56
VPS39-214ENST00000614932 PRPF40BQ6NWY9 871 aaKnown RBP11.58□□□□□ -0.56
VPS39-214ENST00000614932 LRP10Q7Z4F1 713 aa11.58□□□□□ -0.56
VPS39-214ENST00000614932 RSRC1Q96IZ7 334 aaKnown RBP11.58□□□□□ -0.56
VPS39-214ENST00000614932 WDR17Q8IZU2 1322 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 CHMP4BP1P59074 171 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 TFCP2Q12800 502 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 TMC6Q7Z403 805 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 ARHGEF1Q92888 912 aaKnown RBP11.57□□□□□ -0.56
VPS39-214ENST00000614932 TCEANC2Q96MN5 208 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 CENPHQ9H3R5 247 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 SNX14Q9Y5W7 946 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 C5P01031 1676 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 KAT6BQ8WYB5 2073 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 MEFVO15553 781 aaPredicted RBP11.57□□□□□ -0.56
VPS39-214ENST00000614932 SYF2O95926 243 aaKnown RBP11.57□□□□□ -0.56
VPS39-214ENST00000614932 PYGBP11216 843 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 TUBB4BP68371 445 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 LAMB3Q13751 1172 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 CCDC40Q4G0X9 1142 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 LMBR1LQ6UX01 489 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 SPATA21Q7Z572 469 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 ZNF594Q96JF6 807 aaPredicted RBP11.57□□□□□ -0.56
VPS39-214ENST00000614932 PLEKHG4BQ96PX9 1271 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 LSG1Q9H089 658 aaKnown RBP11.57□□□□□ -0.56
VPS39-214ENST00000614932 KAT14Q9H8E8 782 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 VIPAS39Q9H9C1 493 aa11.57□□□□□ -0.56
VPS39-214ENST00000614932 CAMTA1Q9Y6Y1 1673 aa11.56□□□□□ -0.56
VPS39-214ENST00000614932 PLCB4Q15147 1175 aa11.56□□□□□ -0.56
VPS39-214ENST00000614932 ZRSR2Q15696 482 aaKnown RBP11.56□□□□□ -0.56
VPS39-214ENST00000614932 KIF4BQ2VIQ3 1234 aa11.56□□□□□ -0.56
VPS39-214ENST00000614932 ADCK5Q3MIX3 580 aa11.56□□□□□ -0.56
VPS39-214ENST00000614932 THEMIS2Q5TEJ8 643 aa11.56□□□□□ -0.56
VPS39-214ENST00000614932 SRGAP1Q7Z6B7 1085 aa11.56□□□□□ -0.56
VPS39-214ENST00000614932 DHX40Q8IX18 779 aaKnown RBP11.56□□□□□ -0.56
VPS39-214ENST00000614932 IGSF22Q8N9C0 903 aa11.56□□□□□ -0.56
VPS39-214ENST00000614932 PNKPQ96T60 521 aa11.56□□□□□ -0.56
VPS39-214ENST00000614932 FSD1Q9BTV5 496 aa11.56□□□□□ -0.56
VPS39-214ENST00000614932 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.56□□□□□ -0.562e-8■■□□□ 13
VPS39-214ENST00000614932 H7C1W4 665 aa11.56□□□□□ -0.56
VPS39-214ENST00000614932 IL2RBP14784 551 aa11.56□□□□□ -0.56
VPS39-214ENST00000614932 HSPA4P34932 840 aa11.56□□□□□ -0.56
VPS39-214ENST00000614932 GNG11P61952 73 aa11.56□□□□□ -0.56
VPS39-214ENST00000614932 NMIQ13287 307 aaPredicted RBP11.56□□□□□ -0.56
VPS39-214ENST00000614932 FCHSD1Q86WN1 690 aa11.56□□□□□ -0.56
VPS39-214ENST00000614932 MYLK4Q86YV6 388 aaPredicted RBP11.56□□□□□ -0.56
VPS39-214ENST00000614932 FAM177A1Q8N128 213 aaPredicted RBP11.56□□□□□ -0.56
VPS39-214ENST00000614932 GPATCH3Q96I76 525 aa11.56□□□□□ -0.56
VPS39-214ENST00000614932 ZNF396Q96N95 335 aaPredicted RBP11.56□□□□□ -0.56
VPS39-214ENST00000614932 G3BP2Q9UN86 482 aaKnown RBP11.56□□□□□ -0.56
VPS39-214ENST00000614932 VWA3AA6NCI4 1184 aa11.55□□□□□ -0.56
VPS39-214ENST00000614932 LRRIQ3A6PVS8 624 aaPredicted RBP11.55□□□□□ -0.56
VPS39-214ENST00000614932 ZSCAN9O15535 394 aaPredicted RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms