RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 MAP2K1Q02750 393 aaPredicted RBP6.92□□□□□ -1.3
CPNE3-208ENST00000614678 CRHR2Q13324 411 aa6.92□□□□□ -1.3
CPNE3-208ENST00000614678 IFNL1Q8IU54 200 aa6.92□□□□□ -1.3
CPNE3-208ENST00000614678 ZNF296Q8WUU4 475 aaPredicted RBP6.92□□□□□ -1.3
CPNE3-208ENST00000614678 CCDC102AQ96A19 550 aa6.92□□□□□ -1.3
CPNE3-208ENST00000614678 FAM227BQ96M60 508 aa6.92□□□□□ -1.3
CPNE3-208ENST00000614678 EYSQ5T1H1 3165 aa6.92□□□□□ -1.3
CPNE3-208ENST00000614678 KIAA0100Q14667 2235 aaKnown RBP6.92□□□□□ -1.3
CPNE3-208ENST00000614678 MAST2Q6P0Q8 1798 aa6.92□□□□□ -1.3
CPNE3-208ENST00000614678 BTBD19C9JJ37 291 aa6.92□□□□□ -1.3
CPNE3-208ENST00000614678 HDAC1Q13547 482 aaPredicted RBP6.92□□□□□ -1.3
CPNE3-208ENST00000614678 ZYXQ15942 572 aaKnown RBP6.92□□□□□ -1.3
CPNE3-208ENST00000614678 TREML2Q5T2D2 321 aa6.92□□□□□ -1.3
CPNE3-208ENST00000614678 POTEEQ6S8J3 1075 aa6.92□□□□□ -1.3
CPNE3-208ENST00000614678 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.92□□□□□ -1.3
CPNE3-208ENST00000614678 PPP2R3BQ9Y5P8 575 aa6.92□□□□□ -1.3
CPNE3-208ENST00000614678 MYH7P12883 1935 aa6.92□□□□□ -1.3
CPNE3-208ENST00000614678 MAGEB6P1A0A0J9YX57 407 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 MYCP01106 439 aaPredicted RBP6.91□□□□□ -1.3
CPNE3-208ENST00000614678 PDE1AP54750 535 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 FKBP1BP68106 108 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 MAP3K12Q12852 859 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 EPB41L4AQ9HCS5 686 aaPredicted RBP6.91□□□□□ -1.3
CPNE3-208ENST00000614678 PTPRFP10586 1907 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 CCL15-CCL14A0A0B4J2E2 113 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 PTPRAP18433 802 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 PPP4CP60510 307 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 CCL15Q16663 113 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 PLEKHM2Q8IWE5 1019 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 SMC5Q8IY18 1101 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 DCP1AQ9NPI6 582 aaPredicted RBP6.91□□□□□ -1.3
CPNE3-208ENST00000614678 ZNF112Q9UJU3 913 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 ATAD5Q96QE3 1844 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 SPDYE5A6NIY4 337 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 USP5P45974 858 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 KIAA1755Q5JYT7 1200 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 FKBP1CQ5VVH2 108 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 RASGRP2Q7LDG7 609 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 MCM9Q9NXL9 1143 aa6.91□□□□□ -1.3
CPNE3-208ENST00000614678 ENTPD3O75355 529 aa6.9□□□□□ -1.3
CPNE3-208ENST00000614678 PRDM1O75626 825 aa6.9□□□□□ -1.3
CPNE3-208ENST00000614678 TM4SF4P48230 202 aa6.9□□□□□ -1.3
CPNE3-208ENST00000614678 ZNF589Q86UQ0 364 aaPredicted RBP6.9□□□□□ -1.3
CPNE3-208ENST00000614678 AIDAQ96BJ3 306 aa6.9□□□□□ -1.3
CPNE3-208ENST00000614678 ZNF341Q9BYN7 854 aa6.9□□□□□ -1.3
CPNE3-208ENST00000614678 CSADQ9Y600 493 aa6.9□□□□□ -1.3
CPNE3-208ENST00000614678 A0A0D9SFI3 127 aa6.9□□□□□ -1.3
CPNE3-208ENST00000614678 RBAK-RBAKDNI3L0D1 243 aa6.9□□□□□ -1.3
CPNE3-208ENST00000614678 GUCY1A2P33402 732 aa6.9□□□□□ -1.3
CPNE3-208ENST00000614678 CTCFP49711 727 aaPredicted RBP6.9□□□□□ -1.3
CPNE3-208ENST00000614678 SPP2Q13103 211 aa6.9□□□□□ -1.3
CPNE3-208ENST00000614678 COL9A3Q14050 684 aaPredicted RBP6.9□□□□□ -1.3
CPNE3-208ENST00000614678 TNS4Q8IZW8 715 aa6.9□□□□□ -1.3
CPNE3-208ENST00000614678 ACER1Q8TDN7 264 aa6.9□□□□□ -1.3
CPNE3-208ENST00000614678 DDX60LQ5H9U9 1706 aaKnown RBP6.9□□□□□ -1.3
CPNE3-208ENST00000614678 USP17L12C9JPN9 530 aa6.9□□□□□ -1.31
CPNE3-208ENST00000614678 USP17L21D6R901 530 aa6.9□□□□□ -1.31
CPNE3-208ENST00000614678 GSPT1P15170 499 aaKnown RBP6.9□□□□□ -1.31
CPNE3-208ENST00000614678 SHMT1P34896 483 aa6.9□□□□□ -1.31
CPNE3-208ENST00000614678 CHD1LQ86WJ1 897 aa6.9□□□□□ -1.31
CPNE3-208ENST00000614678 BEGAINQ9BUH8 593 aa6.9□□□□□ -1.31
CPNE3-208ENST00000614678 CPA4Q9UI42 421 aa6.9□□□□□ -1.31
CPNE3-208ENST00000614678 GH2P01242 217 aa6.9□□□□□ -1.31
CPNE3-208ENST00000614678 HMGCS2P54868 508 aa6.9□□□□□ -1.31
CPNE3-208ENST00000614678 GSTO1P78417 241 aa6.9□□□□□ -1.31
CPNE3-208ENST00000614678 MAP3K10Q02779 954 aa6.9□□□□□ -1.31
CPNE3-208ENST00000614678 GPAT2Q6NUI2 795 aa6.9□□□□□ -1.31
CPNE3-208ENST00000614678 KBTBD3Q8NAB2 608 aa6.9□□□□□ -1.31
CPNE3-208ENST00000614678 A0A1W2PRG0 241 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 GSG1L2A8MUP6 293 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 LDHCP07864 332 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 NUCB1Q02818 461 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 RILPL2Q969X0 211 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 STRBPQ96SI9 672 aaKnown RBP6.89□□□□□ -1.31
CPNE3-208ENST00000614678 AFG3L2Q9Y4W6 797 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 SLC4A4Q9Y6R1 1079 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 RPAP1Q9BWH6 1393 aaPredicted RBP6.89□□□□□ -1.31
CPNE3-208ENST00000614678 NAV1Q8NEY1 1877 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 BAG3O95817 575 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 CAP2P40123 477 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 MMP14P50281 582 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 ERO1BQ86YB8 467 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 SCYL3Q8IZE3 742 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 FSD1Q9BTV5 496 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 MCOLN1Q9GZU1 580 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 DOCK1Q14185 1865 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 ZBTB22O15209 634 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 GPAA1O43292 621 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 MTMR2Q13614 643 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 RAB3GAP1Q15042 981 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 CTR9Q6PD62 1173 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 SIAH1Q8IUQ4 282 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 CD99L2Q8TCZ2 262 aa6.89□□□□□ -1.31
CPNE3-208ENST00000614678 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.89□□□□□ -1.31
CPNE3-208ENST00000614678 GPR25O00155 361 aa6.88□□□□□ -1.31
CPNE3-208ENST00000614678 ZBTB48P10074 688 aaPredicted RBP6.88□□□□□ -1.31
CPNE3-208ENST00000614678 AKR1B1P15121 316 aa6.88□□□□□ -1.31
CPNE3-208ENST00000614678 SEPT2Q15019 361 aa6.88□□□□□ -1.31
CPNE3-208ENST00000614678 GADL1Q6ZQY3 521 aa6.88□□□□□ -1.31
CPNE3-208ENST00000614678 PI4KBQ9UBF8 816 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 148.9 ms