RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 NUP188Q5SRE5 1749 aa20.97■□□□□ 0.95
UPF1-210ENST00000600689 AFMP43652 599 aa20.97■□□□□ 0.95
UPF1-210ENST00000600689 SPECC1LQ69YQ0 1117 aa20.97■□□□□ 0.95
UPF1-210ENST00000600689 GPAA1O43292 621 aa20.96■□□□□ 0.95
UPF1-210ENST00000600689 CYB5R4Q7L1T6 521 aa20.96■□□□□ 0.95
UPF1-210ENST00000600689 SMYD4Q8IYR2 804 aaPredicted RBP20.96■□□□□ 0.95
UPF1-210ENST00000600689 JMYQ8N9B5 988 aa20.96■□□□□ 0.95
UPF1-210ENST00000600689 MAN1B1Q9UKM7 699 aa20.96■□□□□ 0.95
UPF1-210ENST00000600689 ABL1P00519 1130 aa20.96■□□□□ 0.95
UPF1-210ENST00000600689 TAF7LQ5H9L4 462 aa20.96■□□□□ 0.95
UPF1-210ENST00000600689 RRP12Q5JTH9 1297 aaKnown RBP20.96■□□□□ 0.95
UPF1-210ENST00000600689 GDAP1L1Q96MZ0 367 aa20.96■□□□□ 0.95
UPF1-210ENST00000600689 HINFPQ9BQA5 517 aa20.96■□□□□ 0.95
UPF1-210ENST00000600689 BTBD18B2RXH4 712 aa20.96■□□□□ 0.95
UPF1-210ENST00000600689 USP49Q70CQ1 688 aa20.96■□□□□ 0.95
UPF1-210ENST00000600689 STAMQ92783 540 aa20.96■□□□□ 0.95
UPF1-210ENST00000600689 KIFC2Q96AC6 838 aa20.96■□□□□ 0.95
UPF1-210ENST00000600689 PNKPQ96T60 521 aa20.96■□□□□ 0.95
UPF1-210ENST00000600689 RASSF4Q9H2L5 321 aa20.96■□□□□ 0.95
UPF1-210ENST00000600689 TJP1Q07157 1748 aa20.95■□□□□ 0.94
UPF1-210ENST00000600689 TUBB4AP04350 444 aa20.95■□□□□ 0.94
UPF1-210ENST00000600689 JAKMIP3Q5VZ66 844 aa20.95■□□□□ 0.94
UPF1-210ENST00000600689 SYNE4Q8N205 404 aa20.95■□□□□ 0.94
UPF1-210ENST00000600689 ZKSCAN3Q9BRR0 538 aa20.95■□□□□ 0.94
UPF1-210ENST00000600689 FAN1Q9Y2M0 1017 aa20.95■□□□□ 0.94
UPF1-210ENST00000600689 IDH1O75874 414 aaKnown RBP20.95■□□□□ 0.94
UPF1-210ENST00000600689 TXLNAP40222 546 aa20.95■□□□□ 0.94
UPF1-210ENST00000600689 FAM89AQ96GI7 184 aa20.95■□□□□ 0.94
UPF1-210ENST00000600689 CDC5LQ99459 802 aaKnown RBP20.95■□□□□ 0.94
UPF1-210ENST00000600689 TNS2Q63HR2 1409 aa20.95■□□□□ 0.94
UPF1-210ENST00000600689 EYA2O00167 538 aa20.94■□□□□ 0.94
UPF1-210ENST00000600689 IL15P40933 162 aaPredicted RBP20.94■□□□□ 0.94
UPF1-210ENST00000600689 IARSP41252 1262 aaKnown RBP20.94■□□□□ 0.94
UPF1-210ENST00000600689 PTPAQ15257 358 aa20.94■□□□□ 0.94
UPF1-210ENST00000600689 RSRC2Q7L4I2 434 aaKnown RBP20.94■□□□□ 0.94
UPF1-210ENST00000600689 SEC31BQ9NQW1 1179 aa20.94■□□□□ 0.94
UPF1-210ENST00000600689 PAPPAQ13219 1627 aa20.94■□□□□ 0.94
UPF1-210ENST00000600689 RABGGTAQ92696 567 aa20.94■□□□□ 0.94
UPF1-210ENST00000600689 XAGE2Q96GT9 111 aa20.94■□□□□ 0.94
UPF1-210ENST00000600689 RAD9BQ6WBX8 426 aa20.93■□□□□ 0.94
UPF1-210ENST00000600689 TBC1D10CQ8IV04 446 aa20.93■□□□□ 0.94
UPF1-210ENST00000600689 TEX13AQ9BXU3 409 aaPredicted RBP20.93■□□□□ 0.94
UPF1-210ENST00000600689 ABCB6Q9NP58 842 aa20.93■□□□□ 0.94
UPF1-210ENST00000600689 HPSEQ9Y251 543 aa20.93■□□□□ 0.94
UPF1-210ENST00000600689 ACRBPQ8NEB7 543 aa20.93■□□□□ 0.94
UPF1-210ENST00000600689 ATG3Q9NT62 314 aa20.93■□□□□ 0.94
UPF1-210ENST00000600689 RAI14Q9P0K7 980 aa20.93■□□□□ 0.94
UPF1-210ENST00000600689 GOLGA8AA7E2F4 631 aa20.93■□□□□ 0.94
UPF1-210ENST00000600689 STX10O60499 249 aa20.93■□□□□ 0.94
UPF1-210ENST00000600689 CCDC175P0C221 793 aa20.93■□□□□ 0.94
UPF1-210ENST00000600689 GUCY1A2P33402 732 aa20.93■□□□□ 0.94
UPF1-210ENST00000600689 POSTNQ15063 836 aa20.93■□□□□ 0.94
UPF1-210ENST00000600689 SLC9C2Q5TAH2 1124 aa20.93■□□□□ 0.94
UPF1-210ENST00000600689 RESP18Q5W5W9 173 aa20.93■□□□□ 0.94
UPF1-210ENST00000600689 LEKR1Q6ZMV7 388 aa20.93■□□□□ 0.94
UPF1-210ENST00000600689 RGS22Q8NE09 1264 aa20.93■□□□□ 0.94
UPF1-210ENST00000600689 RBL2Q08999 1139 aa20.92■□□□□ 0.94
UPF1-210ENST00000600689 CCT6AP40227 531 aaKnown RBP20.91■□□□□ 0.94
UPF1-210ENST00000600689 NR5A1Q13285 461 aa20.91■□□□□ 0.94
UPF1-210ENST00000600689 DHX8Q14562 1220 aaKnown RBP20.91■□□□□ 0.94
UPF1-210ENST00000600689 CPLX2Q6PUV4 134 aaKnown RBP20.91■□□□□ 0.94
UPF1-210ENST00000600689 PPFIBP1Q86W92 1011 aa20.91■□□□□ 0.94
UPF1-210ENST00000600689 CHMP4CQ96CF2 233 aa20.91■□□□□ 0.94
UPF1-210ENST00000600689 ANGEL1Q9UNK9 670 aaKnown RBP20.91■□□□□ 0.94
UPF1-210ENST00000600689 RRP15Q9Y3B9 282 aaKnown RBP20.91■□□□□ 0.94
UPF1-210ENST00000600689 TCIRG1Q13488 830 aa20.91■□□□□ 0.94
UPF1-210ENST00000600689 IGSF22Q8N9C0 903 aa20.91■□□□□ 0.94
UPF1-210ENST00000600689 RABEP2Q9H5N1 569 aa20.91■□□□□ 0.94
UPF1-210ENST00000600689 hCG_1642624A0A1W2PR95 340 aa20.91■□□□□ 0.94
UPF1-210ENST00000600689 KIF5CO60282 957 aa20.91■□□□□ 0.94
UPF1-210ENST00000600689 CUTAO60888 179 aa20.91■□□□□ 0.94
UPF1-210ENST00000600689 GPTP24298 496 aa20.91■□□□□ 0.94
UPF1-210ENST00000600689 CDC25AP30304 524 aa20.91■□□□□ 0.94
UPF1-210ENST00000600689 KRI1Q8N9T8 703 aaKnown RBP20.91■□□□□ 0.94
UPF1-210ENST00000600689 IPO4Q8TEX9 1081 aaKnown RBP20.91■□□□□ 0.94
UPF1-210ENST00000600689 MED15Q96RN5 788 aa20.91■□□□□ 0.94
UPF1-210ENST00000600689 MAP3K14Q99558 947 aa20.91■□□□□ 0.94
UPF1-210ENST00000600689 AKR1B15C9JRZ8 316 aaPredicted RBP20.9■□□□□ 0.94
UPF1-210ENST00000600689 ZBTB43O43298 467 aa20.9■□□□□ 0.94
UPF1-210ENST00000600689 RANBP6O60518 1105 aaKnown RBP20.9■□□□□ 0.94
UPF1-210ENST00000600689 HLFQ16534 295 aa20.9■□□□□ 0.94
UPF1-210ENST00000600689 CCDC57Q2TAC2 916 aa20.9■□□□□ 0.94
UPF1-210ENST00000600689 APOA5Q6Q788 366 aa20.9■□□□□ 0.94
UPF1-210ENST00000600689 SLC35F6Q8N357 371 aa20.9■□□□□ 0.94
UPF1-210ENST00000600689 SLC4A9Q96Q91 983 aa20.9■□□□□ 0.94
UPF1-210ENST00000600689 ISCA1Q9BUE6 129 aa20.9■□□□□ 0.94
UPF1-210ENST00000600689 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.9■□□□□ 0.94
UPF1-210ENST00000600689 UBXN6Q9BZV1 441 aa20.9■□□□□ 0.94
UPF1-210ENST00000600689 ANKZF1Q9H8Y5 726 aa20.9■□□□□ 0.94
UPF1-210ENST00000600689 CWC15Q9P013 229 aaKnown RBP20.9■□□□□ 0.94
UPF1-210ENST00000600689 FAM193AP78312 1265 aa20.9■□□□□ 0.94
UPF1-210ENST00000600689 TMEM67Q5HYA8 995 aa20.89■□□□□ 0.94
UPF1-210ENST00000600689 SRGAP1Q7Z6B7 1085 aa20.89■□□□□ 0.94
UPF1-210ENST00000600689 VSNL1P62760 191 aa20.89■□□□□ 0.93
UPF1-210ENST00000600689 AKAP17AQ02040 695 aaKnown RBP20.89■□□□□ 0.93
UPF1-210ENST00000600689 CTDSPL2Q05D32 466 aa20.89■□□□□ 0.93
UPF1-210ENST00000600689 TBX2Q13207 712 aaPredicted RBP20.89■□□□□ 0.93
UPF1-210ENST00000600689 PCDHB6Q9Y5E3 794 aa20.89■□□□□ 0.93
UPF1-210ENST00000600689 LAMA4Q16363 1823 aa20.89■□□□□ 0.93
UPF1-210ENST00000600689 FCHSD1Q86WN1 690 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms