RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 ZBTB16Q05516 673 aa22.85■■□□□ 1.25
UPF1-207ENST00000599848 FAM160B1Q5W0V3 765 aa22.85■■□□□ 1.25
UPF1-207ENST00000599848 IQCDQ96DY2 449 aa22.85■■□□□ 1.25
UPF1-207ENST00000599848 KCTD2Q14681 263 aa22.84■■□□□ 1.25
UPF1-207ENST00000599848 ARFGAP2Q8N6H7 521 aa22.84■■□□□ 1.25
UPF1-207ENST00000599848 JAG2Q9Y219 1238 aa22.84■■□□□ 1.25
UPF1-207ENST00000599848 WDR17Q8IZU2 1322 aa22.84■■□□□ 1.25
UPF1-207ENST00000599848 GABPAQ06546 454 aa22.84■■□□□ 1.25
UPF1-207ENST00000599848 DNAJC10Q8IXB1 793 aa22.84■■□□□ 1.25
UPF1-207ENST00000599848 LEO1Q8WVC0 666 aaPredicted RBP22.84■■□□□ 1.25
UPF1-207ENST00000599848 AP5M1Q9H0R1 490 aa22.84■■□□□ 1.25
UPF1-207ENST00000599848 PFDN6O15212 129 aa22.84■■□□□ 1.25
UPF1-207ENST00000599848 RAPGEF1Q13905 1077 aa22.84■■□□□ 1.25
UPF1-207ENST00000599848 ANGEL1Q9UNK9 670 aaKnown RBP22.84■■□□□ 1.25
UPF1-207ENST00000599848 PSMC4P43686 418 aa22.84■■□□□ 1.25
UPF1-207ENST00000599848 GADL1Q6ZQY3 521 aa22.84■■□□□ 1.25
UPF1-207ENST00000599848 CCDC129Q6ZRS4 1044 aa22.84■■□□□ 1.25
UPF1-207ENST00000599848 ZKSCAN3Q9BRR0 538 aa22.84■■□□□ 1.25
UPF1-207ENST00000599848 PAGR1Q9BTK6 254 aa22.84■■□□□ 1.25
UPF1-207ENST00000599848 SPATA5Q8NB90 893 aa22.84■■□□□ 1.25
UPF1-207ENST00000599848 MFSD14BQ5SR56 506 aa22.83■■□□□ 1.25
UPF1-207ENST00000599848 NCAPH2Q6IBW4 605 aa22.83■■□□□ 1.25
UPF1-207ENST00000599848 EP400NLQ6ZTU2 488 aa22.83■■□□□ 1.25
UPF1-207ENST00000599848 CCDC26Q8TAB7 109 aa22.83■■□□□ 1.25
UPF1-207ENST00000599848 TRIM7Q9C029 511 aa22.83■■□□□ 1.25
UPF1-207ENST00000599848 ZNF277Q9NRM2 450 aaPredicted RBP22.83■■□□□ 1.25
UPF1-207ENST00000599848 CTAGE9A4FU28 777 aa22.83■■□□□ 1.25
UPF1-207ENST00000599848 ARID5AQ03989 594 aa22.83■■□□□ 1.25
UPF1-207ENST00000599848 KLHL40Q2TBA0 621 aa22.83■■□□□ 1.24
UPF1-207ENST00000599848 TSHZ3Q63HK5 1081 aa22.83■■□□□ 1.24
UPF1-207ENST00000599848 CEP85Q6P2H3 762 aa22.83■■□□□ 1.24
UPF1-207ENST00000599848 RUFY3Q7L099 469 aa22.83■■□□□ 1.24
UPF1-207ENST00000599848 ORAI2Q96SN7 254 aa22.83■■□□□ 1.24
UPF1-207ENST00000599848 NRBP2Q9NSY0 501 aa22.83■■□□□ 1.24
UPF1-207ENST00000599848 TRMT1Q9NXH9 659 aaKnown RBP22.83■■□□□ 1.24
UPF1-207ENST00000599848 MUM1L1Q5H9M0 696 aa22.83■■□□□ 1.24
UPF1-207ENST00000599848 ISM2Q6H9L7 571 aa22.83■■□□□ 1.24
UPF1-207ENST00000599848 LARP6Q9BRS8 491 aaKnown RBP22.83■■□□□ 1.24
UPF1-207ENST00000599848 NEO1Q92859 1461 aa22.82■■□□□ 1.24
UPF1-207ENST00000599848 PRAG1Q86YV5 1406 aa22.82■■□□□ 1.24
UPF1-207ENST00000599848 ARHGEF16Q5VV41 709 aa22.82■■□□□ 1.24
UPF1-207ENST00000599848 BCRP11274 1271 aa22.82■■□□□ 1.24
UPF1-207ENST00000599848 PDZD4Q76G19 769 aaPredicted RBP22.82■■□□□ 1.24
UPF1-207ENST00000599848 CROCCP2Q86T23 111 aa22.82■■□□□ 1.24
UPF1-207ENST00000599848 GOLGA5Q8TBA6 731 aa22.82■■□□□ 1.24
UPF1-207ENST00000599848 ARMT1Q9H993 441 aa22.82■■□□□ 1.24
UPF1-207ENST00000599848 SPOPO43791 374 aa22.82■■□□□ 1.24
UPF1-207ENST00000599848 CFBP00751 764 aa22.82■■□□□ 1.24
UPF1-207ENST00000599848 POLR2BP30876 1174 aaKnown RBP22.82■■□□□ 1.24
UPF1-207ENST00000599848 RASA3Q14644 834 aa22.82■■□□□ 1.24
UPF1-207ENST00000599848 UBL4BQ8N7F7 174 aa22.82■■□□□ 1.24
UPF1-207ENST00000599848 MAIP1Q8WWC4 291 aa22.82■■□□□ 1.24
UPF1-207ENST00000599848 AATFQ9NY61 560 aaKnown RBP eCLIP22.82■■□□□ 1.245e-6■□□□□ 8.9
UPF1-207ENST00000599848 LRWD1Q9UFC0 647 aa22.82■■□□□ 1.24
UPF1-207ENST00000599848 APOBRQ0VD83 1088 aa22.82■■□□□ 1.24
UPF1-207ENST00000599848 RNF216Q9NWF9 866 aaPredicted RBP22.82■■□□□ 1.24
UPF1-207ENST00000599848 BICRAQ9NZM4 1560 aa22.81■■□□□ 1.24
UPF1-207ENST00000599848 ABI1Q8IZP0 508 aa22.81■■□□□ 1.24
UPF1-207ENST00000599848 BLMP54132 1417 aaPredicted RBP22.81■■□□□ 1.24
UPF1-207ENST00000599848 ADCY5O95622 1261 aa22.81■■□□□ 1.24
UPF1-207ENST00000599848 GTF2IP78347 998 aa22.81■■□□□ 1.24
UPF1-207ENST00000599848 ODR4Q5SWX8 454 aa22.81■■□□□ 1.24
UPF1-207ENST00000599848 DYNC1I1O14576 645 aa22.81■■□□□ 1.24
UPF1-207ENST00000599848 CCNT1O60563 726 aaKnown RBP22.81■■□□□ 1.24
UPF1-207ENST00000599848 PDE4DQ08499 809 aa22.81■■□□□ 1.24
UPF1-207ENST00000599848 VAMP4O75379 141 aa22.81■■□□□ 1.24
UPF1-207ENST00000599848 NUP58Q9BVL2 599 aa22.81■■□□□ 1.24
UPF1-207ENST00000599848 GOLGA8CPA6NN73 597 aa22.8■■□□□ 1.24
UPF1-207ENST00000599848 ANKS4BQ8N8V4 417 aa22.8■■□□□ 1.24
UPF1-207ENST00000599848 INTS4Q96HW7 963 aaKnown RBP22.8■■□□□ 1.24
UPF1-207ENST00000599848 ANKRD35Q8N283 1001 aa22.8■■□□□ 1.24
UPF1-207ENST00000599848 SLC17A8Q8NDX2 589 aa22.8■■□□□ 1.24
UPF1-207ENST00000599848 CCDC17Q96LX7 622 aa22.8■■□□□ 1.24
UPF1-207ENST00000599848 TFDP1Q14186 410 aa22.8■■□□□ 1.24
UPF1-207ENST00000599848 SND1Q7KZF4 910 aaKnown RBP eCLIP22.8■■□□□ 1.24
UPF1-207ENST00000599848 MIER3Q7Z3K6 550 aa22.8■■□□□ 1.24
UPF1-207ENST00000599848 PCP11498 1178 aaKnown RBP22.8■■□□□ 1.24
UPF1-207ENST00000599848 IVLP07476 585 aa22.79■■□□□ 1.24
UPF1-207ENST00000599848 CUL4BQ13620 913 aa22.79■■□□□ 1.24
UPF1-207ENST00000599848 PODXL2Q9NZ53 605 aa22.79■■□□□ 1.24
UPF1-207ENST00000599848 ADD3Q9UEY8 706 aaKnown RBP22.79■■□□□ 1.24
UPF1-207ENST00000599848 COL17A1Q9UMD9 1497 aaPredicted RBP22.79■■□□□ 1.24
UPF1-207ENST00000599848 UGGT2Q9NYU1 1516 aa22.79■■□□□ 1.24
UPF1-207ENST00000599848 TMEM2Q9UHN6 1383 aa22.79■■□□□ 1.24
UPF1-207ENST00000599848 VWA3AA6NCI4 1184 aa22.79■■□□□ 1.24
UPF1-207ENST00000599848 SEMA3EO15041 775 aa22.79■■□□□ 1.24
UPF1-207ENST00000599848 LGSNQ5TDP6 509 aa22.79■■□□□ 1.24
UPF1-207ENST00000599848 TBC1D2Q9BYX2 928 aa22.79■■□□□ 1.24
UPF1-207ENST00000599848 A0A1W2PP64 1363 aa22.79■■□□□ 1.24
UPF1-207ENST00000599848 TYW5A2RUC4 315 aaKnown RBP22.79■■□□□ 1.24
UPF1-207ENST00000599848 OATP04181 439 aa22.79■■□□□ 1.24
UPF1-207ENST00000599848 SNX29Q8TEQ0 813 aa22.79■■□□□ 1.24
UPF1-207ENST00000599848 ABCD1P33897 745 aa22.79■■□□□ 1.24
UPF1-207ENST00000599848 GAS7O60861 476 aa22.78■■□□□ 1.24
UPF1-207ENST00000599848 TCP10Q12799 353 aa22.78■■□□□ 1.24
UPF1-207ENST00000599848 DPP9Q86TI2 863 aa22.78■■□□□ 1.24
UPF1-207ENST00000599848 GPAA1O43292 621 aa22.78■■□□□ 1.24
UPF1-207ENST00000599848 POLR2MP0CAP2 368 aa22.78■■□□□ 1.24
UPF1-207ENST00000599848 PAIP2Q9BPZ3 127 aaKnown RBP22.78■■□□□ 1.24
UPF1-207ENST00000599848 NOC4LQ9BVI4 516 aaKnown RBP22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms