RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 WDR66Q8TBY9 1149 aa16.81■□□□□ 0.28
VRK3-217ENST00000599538 SH3RF3Q8TEJ3 882 aaPredicted RBP16.81■□□□□ 0.28
VRK3-217ENST00000599538 MTA3Q9BTC8 594 aa16.81■□□□□ 0.28
VRK3-217ENST00000599538 POLR3EQ9NVU0 708 aa16.81■□□□□ 0.28
VRK3-217ENST00000599538 STK38Q15208 465 aa16.81■□□□□ 0.28
VRK3-217ENST00000599538 C15orf52Q6ZUT6 534 aaKnown RBP16.81■□□□□ 0.28
VRK3-217ENST00000599538 TMTC2Q8N394 836 aa16.81■□□□□ 0.28
VRK3-217ENST00000599538 CRACR2BQ8N4Y2 399 aaPredicted RBP16.81■□□□□ 0.28
VRK3-217ENST00000599538 FSIP1Q8NA03 581 aa16.81■□□□□ 0.28
VRK3-217ENST00000599538 ATP8A2Q9NTI2 1148 aa16.81■□□□□ 0.28
VRK3-217ENST00000599538 KCNJ14Q9UNX9 436 aa16.81■□□□□ 0.28
VRK3-217ENST00000599538 GOLGB1Q14789 3259 aaKnown RBP16.8■□□□□ 0.28
VRK3-217ENST00000599538 KIAA1551Q9HCM1 1747 aa16.8■□□□□ 0.28
VRK3-217ENST00000599538 STK36Q9NRP7 1315 aa16.8■□□□□ 0.28
VRK3-217ENST00000599538 A0A1B0GVL5 298 aa16.8■□□□□ 0.28
VRK3-217ENST00000599538 ZBTB22O15209 634 aa16.8■□□□□ 0.28
VRK3-217ENST00000599538 HOXA10P31260 410 aaPredicted RBP16.8■□□□□ 0.28
VRK3-217ENST00000599538 UVSSAQ2YD98 709 aa16.8■□□□□ 0.28
VRK3-217ENST00000599538 SPTY2D1Q68D10 685 aaPredicted RBP16.8■□□□□ 0.28
VRK3-217ENST00000599538 OLFM4Q6UX06 510 aa16.8■□□□□ 0.28
VRK3-217ENST00000599538 MCM9Q9NXL9 1143 aa16.8■□□□□ 0.28
VRK3-217ENST00000599538 MKRN1Q9UHC7 482 aaKnown RBP16.8■□□□□ 0.28
VRK3-217ENST00000599538 GGA1Q9UJY5 639 aa16.8■□□□□ 0.28
VRK3-217ENST00000599538 A0A087WWV3 80 aa16.79■□□□□ 0.28
VRK3-217ENST00000599538 SPTLC2O15270 562 aa16.79■□□□□ 0.28
VRK3-217ENST00000599538 ANO1Q5XXA6 986 aa16.79■□□□□ 0.28
VRK3-217ENST00000599538 MPNDQ8N594 471 aa16.79■□□□□ 0.28
VRK3-217ENST00000599538 TBC1D16Q8TBP0 767 aa16.79■□□□□ 0.28
VRK3-217ENST00000599538 ERCC4Q92889 916 aaPredicted RBP16.79■□□□□ 0.28
VRK3-217ENST00000599538 SHISA4Q96DD7 197 aa16.79■□□□□ 0.28
VRK3-217ENST00000599538 ANKRD31Q8N7Z5 1873 aa16.79■□□□□ 0.28
VRK3-217ENST00000599538 hCG_1642624A0A1W2PR95 340 aa16.79■□□□□ 0.28
VRK3-217ENST00000599538 KLRG2A4D1S0 409 aaPredicted RBP16.79■□□□□ 0.28
VRK3-217ENST00000599538 BBOX1O75936 387 aa16.79■□□□□ 0.28
VRK3-217ENST00000599538 YEATS4O95619 227 aa16.79■□□□□ 0.28
VRK3-217ENST00000599538 APBA3O96018 575 aa16.79■□□□□ 0.28
VRK3-217ENST00000599538 ATP2B4P23634 1241 aa16.79■□□□□ 0.28
VRK3-217ENST00000599538 RBM6P78332 1123 aaKnown RBP16.79■□□□□ 0.28
VRK3-217ENST00000599538 ADALQ6DHV7 355 aa16.79■□□□□ 0.28
VRK3-217ENST00000599538 AKT1S1Q96B36 256 aa16.79■□□□□ 0.28
VRK3-217ENST00000599538 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.79■□□□□ 0.28
VRK3-217ENST00000599538 LAMB1P07942 1786 aa16.79■□□□□ 0.28
VRK3-217ENST00000599538 BTBD18B2RXH4 712 aa16.78■□□□□ 0.28
VRK3-217ENST00000599538 WDHD1O75717 1129 aaPredicted RBP16.78■□□□□ 0.28
VRK3-217ENST00000599538 U2AF2P26368 475 aaKnown RBP eCLIP16.78■□□□□ 0.28
VRK3-217ENST00000599538 MARCKSP29966 332 aaPredicted RBP16.78■□□□□ 0.28
VRK3-217ENST00000599538 SF3A1Q15459 793 aaKnown RBP16.78■□□□□ 0.28
VRK3-217ENST00000599538 ANO6Q4KMQ2 910 aa16.78■□□□□ 0.28
VRK3-217ENST00000599538 IFIT1BQ5T764 474 aaKnown RBP16.78■□□□□ 0.28
VRK3-217ENST00000599538 LUZP1Q86V48 1076 aa16.78■□□□□ 0.28
VRK3-217ENST00000599538 DYNLL2Q96FJ2 89 aa16.78■□□□□ 0.28
VRK3-217ENST00000599538 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.78■□□□□ 0.28
VRK3-217ENST00000599538 ORC4O43929 436 aa16.78■□□□□ 0.28
VRK3-217ENST00000599538 PLEKHA8P1O95397 391 aa16.78■□□□□ 0.28
VRK3-217ENST00000599538 NDUFA8P51970 172 aa16.78■□□□□ 0.28
VRK3-217ENST00000599538 FAM160A1Q05DH4 1040 aa16.78■□□□□ 0.28
VRK3-217ENST00000599538 TROAPQ12815 778 aa16.78■□□□□ 0.28
VRK3-217ENST00000599538 SBK1Q52WX2 424 aa16.78■□□□□ 0.28
VRK3-217ENST00000599538 AXDND1Q5T1B0 1012 aaPredicted RBP16.78■□□□□ 0.28
VRK3-217ENST00000599538 CCDC73Q6ZRK6 1079 aa16.78■□□□□ 0.28
VRK3-217ENST00000599538 IQCA1Q86XH1 822 aa16.78■□□□□ 0.28
VRK3-217ENST00000599538 FMR1NBQ8N0W7 255 aaPredicted RBP16.78■□□□□ 0.28
VRK3-217ENST00000599538 CRAMP1Q96RY5 1269 aa16.78■□□□□ 0.28
VRK3-217ENST00000599538 ARPP21Q9UBL0 812 aaPredicted RBP16.78■□□□□ 0.28
VRK3-217ENST00000599538 BAZ2BQ9UIF8 2168 aaKnown RBP16.77■□□□□ 0.28
VRK3-217ENST00000599538 C6orf229H3BNL8 230 aa16.77■□□□□ 0.28
VRK3-217ENST00000599538 ADCY5O95622 1261 aa16.77■□□□□ 0.28
VRK3-217ENST00000599538 IL1R1P14778 569 aa16.77■□□□□ 0.28
VRK3-217ENST00000599538 PLCB2Q00722 1185 aa16.77■□□□□ 0.28
VRK3-217ENST00000599538 FUT2Q10981 343 aa16.77■□□□□ 0.28
VRK3-217ENST00000599538 GNL2Q13823 731 aaKnown RBP16.77■□□□□ 0.28
VRK3-217ENST00000599538 TRIM29Q14134 588 aa16.77■□□□□ 0.28
VRK3-217ENST00000599538 KLHL34Q8N239 644 aa16.77■□□□□ 0.28
VRK3-217ENST00000599538 RGS22Q8NE09 1264 aa16.77■□□□□ 0.28
VRK3-217ENST00000599538 KCNG4Q8TDN1 519 aa16.77■□□□□ 0.28
VRK3-217ENST00000599538 MRPS27Q92552 414 aaKnown RBP16.77■□□□□ 0.28
VRK3-217ENST00000599538 PODXL2Q9NZ53 605 aa16.77■□□□□ 0.28
VRK3-217ENST00000599538 MMP1P03956 469 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 CLCN1P35523 988 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 USP5P45974 858 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 TRIM22Q8IYM9 498 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 FAM200AQ8TCP9 573 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 TGFBRAP1Q8WUH2 860 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 MAP3K14Q99558 947 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 RTFDC1Q9BY42 306 aaPredicted RBP16.76■□□□□ 0.27
VRK3-217ENST00000599538 CCDC196A0A1B0GTZ2 297 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 PLSCR1O15162 318 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 PCP11498 1178 aaKnown RBP16.76■□□□□ 0.27
VRK3-217ENST00000599538 RCAN1P53805 252 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 NR5A1Q13285 461 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 SLC39A14Q15043 492 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 PTPAQ15257 358 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 PKN1Q16512 942 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 C12orf60Q5U649 245 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 ZSCAN30Q86W11 494 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 DIS3L2Q8IYB7 885 aaKnown RBP16.76■□□□□ 0.27
VRK3-217ENST00000599538 DNAJC25Q9H1X3 360 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 CBX8Q9HC52 389 aa16.76■□□□□ 0.27
VRK3-217ENST00000599538 MROH7-TTC4A0A0A0MT08 1334 aa16.75■□□□□ 0.27
VRK3-217ENST00000599538 MYH6P13533 1939 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms