RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 GCC1Q96CN9 775 aa19.03■□□□□ 0.64
LIG3-215ENST00000592690 R3HDMLQ9H3Y0 253 aa19.03■□□□□ 0.64
LIG3-215ENST00000592690 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.03■□□□□ 0.64
LIG3-215ENST00000592690 SAP30BPQ9UHR5 308 aaKnown RBP19.03■□□□□ 0.64
LIG3-215ENST00000592690 PALD1Q9ULE6 856 aa19.03■□□□□ 0.64
LIG3-215ENST00000592690 TTC41PQ6P2S7 1318 aa19.02■□□□□ 0.64
LIG3-215ENST00000592690 SALL3Q9BXA9 1300 aa19.02■□□□□ 0.64
LIG3-215ENST00000592690 USP5P45974 858 aa19.02■□□□□ 0.64
LIG3-215ENST00000592690 PPATQ06203 517 aa19.02■□□□□ 0.64
LIG3-215ENST00000592690 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.02■□□□□ 0.64
LIG3-215ENST00000592690 DHX36Q9H2U1 1008 aaKnown RBP19.02■□□□□ 0.64
LIG3-215ENST00000592690 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.02■□□□□ 0.64
LIG3-215ENST00000592690 CAPN15O75808 1086 aa19.01■□□□□ 0.63
LIG3-215ENST00000592690 IGHDP01880 384 aa19.01■□□□□ 0.63
LIG3-215ENST00000592690 RRP1BQ14684 758 aaKnown RBP19.01■□□□□ 0.63
LIG3-215ENST00000592690 LCORLQ8N3X6 602 aa19.01■□□□□ 0.63
LIG3-215ENST00000592690 PI4K2BQ8TCG2 481 aa19.01■□□□□ 0.63
LIG3-215ENST00000592690 DNAJC18Q9H819 358 aa19.01■□□□□ 0.63
LIG3-215ENST00000592690 PI4KBQ9UBF8 816 aa19.01■□□□□ 0.63
LIG3-215ENST00000592690 ALDH1A1P00352 501 aa19■□□□□ 0.63
LIG3-215ENST00000592690 MX1P20591 662 aa19■□□□□ 0.63
LIG3-215ENST00000592690 CFHR5Q9BXR6 569 aa19■□□□□ 0.63
LIG3-215ENST00000592690 RWDD1Q9H446 243 aaPredicted RBP19■□□□□ 0.63
LIG3-215ENST00000592690 ARMT1Q9H993 441 aa19■□□□□ 0.63
LIG3-215ENST00000592690 HERC5Q9UII4 1024 aaKnown RBP19■□□□□ 0.63
LIG3-215ENST00000592690 CTNND1O60716 968 aaKnown RBP18.99■□□□□ 0.63
LIG3-215ENST00000592690 MBD4O95243 580 aa18.99■□□□□ 0.63
LIG3-215ENST00000592690 CETPP11597 493 aa18.99■□□□□ 0.63
LIG3-215ENST00000592690 PTPRAP18433 802 aa18.99■□□□□ 0.63
LIG3-215ENST00000592690 SNAPC2Q13487 334 aa18.99■□□□□ 0.63
LIG3-215ENST00000592690 UBE3CQ15386 1083 aa18.99■□□□□ 0.63
LIG3-215ENST00000592690 CCDC84Q86UT8 332 aaPredicted RBP18.99■□□□□ 0.63
LIG3-215ENST00000592690 SMC5Q8IY18 1101 aa18.99■□□□□ 0.63
LIG3-215ENST00000592690 FAM43AQ8N2R8 423 aa18.99■□□□□ 0.63
LIG3-215ENST00000592690 KBTBD3Q8NAB2 608 aa18.99■□□□□ 0.63
LIG3-215ENST00000592690 CRNKL1Q9BZJ0 848 aaKnown RBP18.99■□□□□ 0.63
LIG3-215ENST00000592690 PICK1Q9NRD5 415 aa18.99■□□□□ 0.63
LIG3-215ENST00000592690 ZBTB47Q9UFB7 747 aaPredicted RBP18.99■□□□□ 0.63
LIG3-215ENST00000592690 KCNH4Q9UQ05 1017 aa18.99■□□□□ 0.63
LIG3-215ENST00000592690 LOC285556D6RIA3 1793 aa18.98■□□□□ 0.63
LIG3-215ENST00000592690 GPR25O00155 361 aa18.98■□□□□ 0.63
LIG3-215ENST00000592690 GLRX3O76003 335 aaKnown RBP18.98■□□□□ 0.63
LIG3-215ENST00000592690 OTUD7BQ6GQQ9 843 aa18.98■□□□□ 0.63
LIG3-215ENST00000592690 METTL16Q86W50 562 aaKnown RBP18.98■□□□□ 0.63
LIG3-215ENST00000592690 CRACR2BQ8N4Y2 399 aaPredicted RBP18.98■□□□□ 0.63
LIG3-215ENST00000592690 SDR42E1Q8WUS8 393 aa18.98■□□□□ 0.63
LIG3-215ENST00000592690 ZHX2Q9Y6X8 837 aa18.98■□□□□ 0.63
LIG3-215ENST00000592690 ERC2O15083 957 aa18.97■□□□□ 0.63
LIG3-215ENST00000592690 HLA-DOAP06340 250 aa18.97■□□□□ 0.63
LIG3-215ENST00000592690 CRHR2Q13324 411 aa18.97■□□□□ 0.63
LIG3-215ENST00000592690 B4GALNT3Q6L9W6 998 aa18.97■□□□□ 0.63
LIG3-215ENST00000592690 ZSCAN25Q6NSZ9 544 aa18.97■□□□□ 0.63
LIG3-215ENST00000592690 FOXP4Q8IVH2 680 aaPredicted RBP18.97■□□□□ 0.63
LIG3-215ENST00000592690 ZNF296Q8WUU4 475 aaPredicted RBP18.97■□□□□ 0.63
LIG3-215ENST00000592690 LNPKQ9C0E8 428 aa18.97■□□□□ 0.63
LIG3-215ENST00000592690 ZSWIM8A7E2V4 1837 aa18.97■□□□□ 0.63
LIG3-215ENST00000592690 BTBD19C9JJ37 291 aa18.96■□□□□ 0.63
LIG3-215ENST00000592690 PRKAB2O43741 272 aa18.96■□□□□ 0.63
LIG3-215ENST00000592690 CAP2P40123 477 aa18.96■□□□□ 0.63
LIG3-215ENST00000592690 EVX2Q03828 476 aa18.96■□□□□ 0.63
LIG3-215ENST00000592690 MOGSQ13724 837 aa18.96■□□□□ 0.63
LIG3-215ENST00000592690 SHROOM1Q2M3G4 852 aaPredicted RBP18.96■□□□□ 0.63
LIG3-215ENST00000592690 PUS7LQ9H0K6 701 aaKnown RBP18.96■□□□□ 0.63
LIG3-215ENST00000592690 DCP1AQ9NPI6 582 aaPredicted RBP18.96■□□□□ 0.63
LIG3-215ENST00000592690 AFG3L2Q9Y4W6 797 aa18.96■□□□□ 0.63
LIG3-215ENST00000592690 JAG1P78504 1218 aa18.95■□□□□ 0.62
LIG3-215ENST00000592690 TAF1CQ15572 869 aaPredicted RBP18.95■□□□□ 0.62
LIG3-215ENST00000592690 NOM1Q5C9Z4 860 aaKnown RBP18.95■□□□□ 0.62
LIG3-215ENST00000592690 TRIM34Q9BYJ4 488 aa18.95■□□□□ 0.62
LIG3-215ENST00000592690 CXCL11O14625 94 aa18.94■□□□□ 0.62
LIG3-215ENST00000592690 GDF11O95390 407 aa18.94■□□□□ 0.62
LIG3-215ENST00000592690 PLCD1P51178 756 aa18.94■□□□□ 0.62
LIG3-215ENST00000592690 PDE1AP54750 535 aa18.94■□□□□ 0.62
LIG3-215ENST00000592690 EHD4Q9H223 541 aa18.94■□□□□ 0.62
LIG3-215ENST00000592690 MCM9Q9NXL9 1143 aa18.94■□□□□ 0.62
LIG3-215ENST00000592690 STAP2Q9UGK3 403 aa18.94■□□□□ 0.62
LIG3-215ENST00000592690 SERPINB13Q9UIV8 391 aa18.94■□□□□ 0.62
LIG3-215ENST00000592690 A0A0G2JLL6 359 aaPredicted RBP18.93■□□□□ 0.62
LIG3-215ENST00000592690 TRIM75PA6NK02 468 aa18.93■□□□□ 0.62
LIG3-215ENST00000592690 RNF113AO15541 343 aaKnown RBP18.93■□□□□ 0.62
LIG3-215ENST00000592690 FKTNO75072 461 aa18.93■□□□□ 0.62
LIG3-215ENST00000592690 POLR3DP05423 398 aaPredicted RBP18.93■□□□□ 0.62
LIG3-215ENST00000592690 NUCB1Q02818 461 aa18.93■□□□□ 0.62
LIG3-215ENST00000592690 DGKZQ13574 1117 aa18.93■□□□□ 0.62
LIG3-215ENST00000592690 PRRT2Q7Z6L0 340 aaPredicted RBP18.93■□□□□ 0.62
LIG3-215ENST00000592690 TTC6Q86TZ1 520 aa18.93■□□□□ 0.62
LIG3-215ENST00000592690 MCOLN1Q9GZU1 580 aa18.93■□□□□ 0.62
LIG3-215ENST00000592690 CYP2D6P10635 497 aa18.92■□□□□ 0.62
LIG3-215ENST00000592690 GPAT2Q6NUI2 795 aa18.92■□□□□ 0.62
LIG3-215ENST00000592690 ANKRD23Q86SG2 305 aa18.92■□□□□ 0.62
LIG3-215ENST00000592690 CHD1LQ86WJ1 897 aa18.92■□□□□ 0.62
LIG3-215ENST00000592690 APPBP2Q92624 585 aa18.92■□□□□ 0.62
LIG3-215ENST00000592690 OSBP2Q969R2 916 aa18.92■□□□□ 0.62
LIG3-215ENST00000592690 FSD1Q9BTV5 496 aa18.92■□□□□ 0.62
LIG3-215ENST00000592690 ZFYVE28Q9HCC9 887 aa18.92■□□□□ 0.62
LIG3-215ENST00000592690 ZCCHC17Q9NP64 241 aaKnown RBP18.92■□□□□ 0.62
LIG3-215ENST00000592690 MGAMO43451 1857 aa18.91■□□□□ 0.62
LIG3-215ENST00000592690 M0R2C6 588 aa18.91■□□□□ 0.62
LIG3-215ENST00000592690 ZFYP08048 801 aaPredicted RBP18.91■□□□□ 0.62
LIG3-215ENST00000592690 TATDN1Q6P1N9 297 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms