RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 BRCA2P51587 3418 aa10.73□□□□□ -0.69
SMAD4-209ENST00000589941 CA12O43570 354 aa10.73□□□□□ -0.69
SMAD4-209ENST00000589941 LRRC69Q6ZNQ3 347 aa10.73□□□□□ -0.69
SMAD4-209ENST00000589941 HSH2DQ96JZ2 352 aa10.73□□□□□ -0.69
SMAD4-209ENST00000589941 NARFQ9UHQ1 456 aa10.73□□□□□ -0.69
SMAD4-209ENST00000589941 HCN2Q9UL51 889 aa10.73□□□□□ -0.69
SMAD4-209ENST00000589941 ZBTB1Q9Y2K1 713 aa10.73□□□□□ -0.69
SMAD4-209ENST00000589941 SNED1Q8TER0 1413 aa10.73□□□□□ -0.69
SMAD4-209ENST00000589941 CENPFP49454 3210 aa10.72□□□□□ -0.69
SMAD4-209ENST00000589941 ERVV-2B6SEH9 535 aa10.72□□□□□ -0.69
SMAD4-209ENST00000589941 BNIP3LO60238 219 aa10.72□□□□□ -0.69
SMAD4-209ENST00000589941 ATP2B4P23634 1241 aa10.72□□□□□ -0.69
SMAD4-209ENST00000589941 SCNN1AP37088 669 aa10.72□□□□□ -0.69
SMAD4-209ENST00000589941 PRR5LQ6MZQ0 368 aa10.72□□□□□ -0.69
SMAD4-209ENST00000589941 PNMA8AQ86V59 439 aaPredicted RBP10.72□□□□□ -0.69
SMAD4-209ENST00000589941 NLRP8Q86W28 1048 aa10.72□□□□□ -0.69
SMAD4-209ENST00000589941 RETREG2Q8NC44 543 aa10.72□□□□□ -0.69
SMAD4-209ENST00000589941 ZNF280CQ8ND82 737 aa10.72□□□□□ -0.69
SMAD4-209ENST00000589941 CNTNAP3BQ96NU0 1288 aa10.72□□□□□ -0.69
SMAD4-209ENST00000589941 MKNK1Q9BUB5 465 aa10.72□□□□□ -0.69
SMAD4-209ENST00000589941 CNTNAP3Q9BZ76 1288 aa10.72□□□□□ -0.69
SMAD4-209ENST00000589941 NDFIP2Q9NV92 336 aa10.72□□□□□ -0.69
SMAD4-209ENST00000589941 MRC1P22897 1456 aa10.72□□□□□ -0.69
SMAD4-209ENST00000589941 A0A0C4DFX4 3053 aa10.72□□□□□ -0.69
SMAD4-209ENST00000589941 WIPF1O43516 503 aa10.71□□□□□ -0.69
SMAD4-209ENST00000589941 SAPCD2Q86UD0 394 aa10.71□□□□□ -0.69
SMAD4-209ENST00000589941 ABHD17AQ96GS6 310 aa10.71□□□□□ -0.69
SMAD4-209ENST00000589941 POLR2AP24928 1970 aaKnown RBP10.7□□□□□ -0.7
SMAD4-209ENST00000589941 DLL1O00548 723 aa10.7□□□□□ -0.7
SMAD4-209ENST00000589941 CABP4P57796 275 aa10.7□□□□□ -0.7
SMAD4-209ENST00000589941 TBC1D9BQ66K14 1250 aa10.7□□□□□ -0.7
SMAD4-209ENST00000589941 FOXR1Q6PIV2 292 aa10.7□□□□□ -0.7
SMAD4-209ENST00000589941 SLC51AQ86UW1 340 aa10.7□□□□□ -0.7
SMAD4-209ENST00000589941 VTI1AQ96AJ9 217 aa10.7□□□□□ -0.7
SMAD4-209ENST00000589941 GCC1Q96CN9 775 aa10.7□□□□□ -0.7
SMAD4-209ENST00000589941 TRIOBPQ9H2D6 2365 aa10.69□□□□□ -0.7
SMAD4-209ENST00000589941 ATXN7O15265 892 aaPredicted RBP10.69□□□□□ -0.7
SMAD4-209ENST00000589941 EPS15P42566 896 aa10.69□□□□□ -0.7
SMAD4-209ENST00000589941 RTN1Q16799 776 aa10.69□□□□□ -0.7
SMAD4-209ENST00000589941 SUSD3Q96L08 255 aa10.69□□□□□ -0.7
SMAD4-209ENST00000589941 TRERF1Q96PN7 1200 aa10.69□□□□□ -0.7
SMAD4-209ENST00000589941 LRFN2Q9ULH4 789 aa10.69□□□□□ -0.7
SMAD4-209ENST00000589941 PCDHGC4Q9Y5F7 938 aa10.69□□□□□ -0.7
SMAD4-209ENST00000589941 GJA3Q9Y6H8 435 aa10.69□□□□□ -0.7
SMAD4-209ENST00000589941 SIPA1L3O60292 1781 aaPredicted RBP10.69□□□□□ -0.7
SMAD4-209ENST00000589941 DCDC2BA2VCK2 349 aa10.68□□□□□ -0.7
SMAD4-209ENST00000589941 FZD9O00144 591 aa10.68□□□□□ -0.7
SMAD4-209ENST00000589941 PPM1GO15355 546 aaPredicted RBP10.68□□□□□ -0.7
SMAD4-209ENST00000589941 CELF2O95319 508 aaKnown RBP10.68□□□□□ -0.7
SMAD4-209ENST00000589941 CYP19A1P11511 503 aaPredicted RBP10.68□□□□□ -0.7
SMAD4-209ENST00000589941 FKBP4Q02790 459 aaKnown RBP eCLIP10.68□□□□□ -0.7
SMAD4-209ENST00000589941 GPC2Q8N158 579 aa10.68□□□□□ -0.7
SMAD4-209ENST00000589941 BRIP1Q9BX63 1249 aa10.68□□□□□ -0.7
SMAD4-209ENST00000589941 CFHR5Q9BXR6 569 aa10.68□□□□□ -0.7
SMAD4-209ENST00000589941 SAP130Q9H0E3 1048 aa10.68□□□□□ -0.7
SMAD4-209ENST00000589941 KLK14Q9P0G3 267 aa10.68□□□□□ -0.7
SMAD4-209ENST00000589941 USTQ9Y2C2 406 aa10.68□□□□□ -0.7
SMAD4-209ENST00000589941 GPC6Q9Y625 555 aaPredicted RBP10.68□□□□□ -0.7
SMAD4-209ENST00000589941 SRGNP10124 158 aa10.67□□□□□ -0.7
SMAD4-209ENST00000589941 PDE6BP35913 854 aa10.67□□□□□ -0.7
SMAD4-209ENST00000589941 NAA30Q147X3 362 aaPredicted RBP10.67□□□□□ -0.7
SMAD4-209ENST00000589941 CCDC93Q567U6 631 aa10.67□□□□□ -0.7
SMAD4-209ENST00000589941 PHLDB3Q6NSJ2 640 aa10.67□□□□□ -0.7
SMAD4-209ENST00000589941 ZNF530Q6P9A1 599 aaPredicted RBP10.67□□□□□ -0.7
SMAD4-209ENST00000589941 FIGNL1Q6PIW4 674 aa10.67□□□□□ -0.7
SMAD4-209ENST00000589941 GLIS2Q9BZE0 524 aaPredicted RBP10.67□□□□□ -0.7
SMAD4-209ENST00000589941 KHNYNO15037 678 aaKnown RBP10.66□□□□□ -0.7
SMAD4-209ENST00000589941 MAPTP10636 758 aaKnown RBP10.66□□□□□ -0.7
SMAD4-209ENST00000589941 TNP2Q05952 138 aa10.66□□□□□ -0.7
SMAD4-209ENST00000589941 COX20Q5RI15 118 aa10.66□□□□□ -0.7
SMAD4-209ENST00000589941 SAMD5Q5TGI4 173 aa10.66□□□□□ -0.7
SMAD4-209ENST00000589941 STYK1Q6J9G0 422 aa10.66□□□□□ -0.7
SMAD4-209ENST00000589941 DLK2Q6UY11 383 aa10.66□□□□□ -0.7
SMAD4-209ENST00000589941 CCER1Q8TC90 406 aaPredicted RBP10.66□□□□□ -0.7
SMAD4-209ENST00000589941 MYO19Q96H55 970 aa10.66□□□□□ -0.7
SMAD4-209ENST00000589941 NEUROD4Q9HD90 331 aa10.66□□□□□ -0.7
SMAD4-209ENST00000589941 ATXN7L1Q9ULK2 861 aaPredicted RBP10.66□□□□□ -0.7
SMAD4-209ENST00000589941 KDM3BQ7LBC6 1761 aa10.66□□□□□ -0.7
SMAD4-209ENST00000589941 WASHC2AQ641Q2 1341 aa10.65□□□□□ -0.7
SMAD4-209ENST00000589941 FAM157BP0CG42 384 aa10.65□□□□□ -0.7
SMAD4-209ENST00000589941 LORP23490 312 aaPredicted RBP10.65□□□□□ -0.7
SMAD4-209ENST00000589941 IARSP41252 1262 aaKnown RBP10.65□□□□□ -0.7
SMAD4-209ENST00000589941 CTBSQ01459 385 aa10.65□□□□□ -0.7
SMAD4-209ENST00000589941 EIF4A2Q14240 407 aaKnown RBP10.65□□□□□ -0.7
SMAD4-209ENST00000589941 CTU1Q7Z7A3 348 aaKnown RBP10.65□□□□□ -0.7
SMAD4-209ENST00000589941 TESK2Q96S53 571 aa10.65□□□□□ -0.7
SMAD4-209ENST00000589941 ZNF408Q9H9D4 720 aa10.65□□□□□ -0.7
SMAD4-209ENST00000589941 MBIPQ9NS73 344 aa10.65□□□□□ -0.7
SMAD4-209ENST00000589941 SEPT3Q9UH03 358 aa10.65□□□□□ -0.7
SMAD4-209ENST00000589941 CEP290O15078 2479 aa10.65□□□□□ -0.7
SMAD4-209ENST00000589941 FAM155AB1AL88 458 aaPredicted RBP10.64□□□□□ -0.71
SMAD4-209ENST00000589941 EFSO43281 561 aa10.64□□□□□ -0.71
SMAD4-209ENST00000589941 SOGA3Q5TF21 947 aa10.64□□□□□ -0.71
SMAD4-209ENST00000589941 COL26A1Q96A83 441 aa10.64□□□□□ -0.71
SMAD4-209ENST00000589941 HHIPL1Q96JK4 782 aa10.64□□□□□ -0.71
SMAD4-209ENST00000589941 CARD11Q9BXL7 1154 aa10.64□□□□□ -0.71
SMAD4-209ENST00000589941 PHF24Q9UPV7 400 aa10.64□□□□□ -0.71
SMAD4-209ENST00000589941 RANBP2P49792 3224 aaKnown RBP10.64□□□□□ -0.71
SMAD4-209ENST00000589941 C2CD2LO14523 706 aa10.63□□□□□ -0.71
SMAD4-209ENST00000589941 TRPA1O75762 1119 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms