RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 NBPF3Q9H094 633 aa12.43□□□□□ -0.42
VPS4B-204ENST00000589604 DEFB129Q9H1M3 183 aa12.43□□□□□ -0.42
VPS4B-204ENST00000589604 DDX60LQ5H9U9 1706 aaKnown RBP12.43□□□□□ -0.42
VPS4B-204ENST00000589604 MAGEB6P1A0A0J9YX57 407 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 SIPA1L1O43166 1804 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 MYO1BO43795 1136 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 ZMYM6O95789 1325 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 ZKSCAN1P17029 563 aaPredicted RBP12.42□□□□□ -0.42
VPS4B-204ENST00000589604 PICALMQ13492 652 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 CDC37L1Q7L3B6 337 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 APOBEC3FQ8IUX4 373 aaKnown RBP12.42□□□□□ -0.42
VPS4B-204ENST00000589604 HSCBQ8IWL3 235 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 SULF1Q8IWU6 871 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 TEX11Q8IYF3 940 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 CDCA5Q96FF9 252 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 FZD1Q9UP38 647 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 SMIM22K7EJ46 135 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 K7ELQ4 463 aaPredicted RBP12.42□□□□□ -0.42
VPS4B-204ENST00000589604 CASTP20810 708 aaKnown RBP12.42□□□□□ -0.42
VPS4B-204ENST00000589604 NBPF12Q5TAG4 269 aaPredicted RBP12.42□□□□□ -0.42
VPS4B-204ENST00000589604 FKBP1CQ5VVH2 108 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 CST9Q5W186 159 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 RUFY3Q7L099 469 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 MAPKAPK5Q8IW41 473 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 IFNL3Q8IZI9 196 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 IL27Q8NEV9 243 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 TGFBRAP1Q8WUH2 860 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 MKRN1Q9UHC7 482 aaKnown RBP12.42□□□□□ -0.42
VPS4B-204ENST00000589604 CTNNA3Q9UI47 895 aa12.42□□□□□ -0.42
VPS4B-204ENST00000589604 CEP350Q5VT06 3117 aa12.41□□□□□ -0.42
VPS4B-204ENST00000589604 FLT1P17948 1338 aa12.41□□□□□ -0.42
VPS4B-204ENST00000589604 DDTLA6NHG4 134 aaPredicted RBP12.41□□□□□ -0.42
VPS4B-204ENST00000589604 ST18O60284 1047 aa12.41□□□□□ -0.42
VPS4B-204ENST00000589604 BAG3O95817 575 aa12.41□□□□□ -0.42
VPS4B-204ENST00000589604 GNAT2P19087 354 aa12.41□□□□□ -0.42
VPS4B-204ENST00000589604 FSTL1Q12841 308 aa12.41□□□□□ -0.42
VPS4B-204ENST00000589604 SDR42E1Q8WUS8 393 aa12.41□□□□□ -0.42
VPS4B-204ENST00000589604 TACC3Q9Y6A5 838 aa12.41□□□□□ -0.42
VPS4B-204ENST00000589604 SLC4A4Q9Y6R1 1079 aa12.41□□□□□ -0.42
VPS4B-204ENST00000589604 ATRNL1Q5VV63 1379 aa12.4□□□□□ -0.42
VPS4B-204ENST00000589604 E7EWF7 191 aa12.4□□□□□ -0.42
VPS4B-204ENST00000589604 GTPBP6O43824 516 aaPredicted RBP12.4□□□□□ -0.42
VPS4B-204ENST00000589604 KRT32Q14532 448 aa12.4□□□□□ -0.42
VPS4B-204ENST00000589604 SLC4A8Q2Y0W8 1093 aa12.4□□□□□ -0.42
VPS4B-204ENST00000589604 MOB2Q70IA6 237 aa12.4□□□□□ -0.42
VPS4B-204ENST00000589604 FAM83AQ86UY5 434 aa12.4□□□□□ -0.42
VPS4B-204ENST00000589604 NKX2-3Q8TAU0 364 aa12.4□□□□□ -0.42
VPS4B-204ENST00000589604 FAM151AQ8WW52 585 aa12.4□□□□□ -0.42
VPS4B-204ENST00000589604 ALDH8A1Q9H2A2 487 aaPredicted RBP12.4□□□□□ -0.42
VPS4B-204ENST00000589604 CYP46A1Q9Y6A2 500 aa12.4□□□□□ -0.42
VPS4B-204ENST00000589604 NAV1Q8NEY1 1877 aa12.4□□□□□ -0.42
VPS4B-204ENST00000589604 TRPM7Q96QT4 1865 aa12.4□□□□□ -0.42
VPS4B-204ENST00000589604 LAMB1P07942 1786 aa12.4□□□□□ -0.43
VPS4B-204ENST00000589604 RPS6KB1P23443 525 aa12.39□□□□□ -0.43
VPS4B-204ENST00000589604 PSMA5P28066 241 aa12.39□□□□□ -0.43
VPS4B-204ENST00000589604 AK2P54819 239 aa12.39□□□□□ -0.43
VPS4B-204ENST00000589604 HAND2P61296 217 aa12.39□□□□□ -0.43
VPS4B-204ENST00000589604 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.39□□□□□ -0.43
VPS4B-204ENST00000589604 NEK1Q96PY6 1258 aa12.39□□□□□ -0.43
VPS4B-204ENST00000589604 NOL10Q9BSC4 688 aaKnown RBP12.39□□□□□ -0.43
VPS4B-204ENST00000589604 OSBPL5Q9H0X9 879 aaPredicted RBP12.39□□□□□ -0.43
VPS4B-204ENST00000589604 TMOD2Q9NZR1 351 aa12.39□□□□□ -0.43
VPS4B-204ENST00000589604 SAP30BPQ9UHR5 308 aaKnown RBP12.39□□□□□ -0.43
VPS4B-204ENST00000589604 CIZ1Q9ULV3 898 aaPredicted RBP12.39□□□□□ -0.43
VPS4B-204ENST00000589604 ENTPD3O75355 529 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 APPP05067 770 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 PLCG2P16885 1265 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 DDIT3P35638 169 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 EXOSC10Q01780 885 aaKnown RBP12.38□□□□□ -0.43
VPS4B-204ENST00000589604 IMMTQ16891 758 aaKnown RBP12.38□□□□□ -0.43
VPS4B-204ENST00000589604 BLOC1S2Q6QNY1 142 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 TBC1D10CQ8IV04 446 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 TMX3Q96JJ7 454 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 ZNF408Q9H9D4 720 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 DCP1AQ9NPI6 582 aaPredicted RBP12.38□□□□□ -0.43
VPS4B-204ENST00000589604 PDRG1Q9NUG6 133 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 PAPPA2Q9BXP8 1791 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 MYH1P12882 1939 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 CYP2D7A0A087X1C5 515 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 CELF2O95319 508 aaKnown RBP12.38□□□□□ -0.43
VPS4B-204ENST00000589604 CYP2D6P10635 497 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 MCM2P49736 904 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 HTRA3P83110 453 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 CUL4AQ13619 759 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 TNFAIP1Q13829 316 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 PRKG1Q13976 671 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 TOB2Q14106 344 aaPredicted RBP12.38□□□□□ -0.43
VPS4B-204ENST00000589604 PLCD3Q8N3E9 789 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 CRNKL1Q9BZJ0 848 aaKnown RBP12.38□□□□□ -0.43
VPS4B-204ENST00000589604 PPP2R3BQ9Y5P8 575 aa12.38□□□□□ -0.43
VPS4B-204ENST00000589604 COL2A1P02458 1487 aaPredicted RBP12.37□□□□□ -0.43
VPS4B-204ENST00000589604 FAM196BA6NMK8 535 aa12.37□□□□□ -0.43
VPS4B-204ENST00000589604 ZNF213O14771 459 aa12.37□□□□□ -0.43
VPS4B-204ENST00000589604 USP5P45974 858 aa12.37□□□□□ -0.43
VPS4B-204ENST00000589604 GIMAP6Q6P9H5 292 aa12.37□□□□□ -0.43
VPS4B-204ENST00000589604 MB21D2Q8IYB1 491 aaPredicted RBP12.37□□□□□ -0.43
VPS4B-204ENST00000589604 TCEANC2Q96MN5 208 aa12.37□□□□□ -0.43
VPS4B-204ENST00000589604 NAPBQ9H115 298 aa12.37□□□□□ -0.43
VPS4B-204ENST00000589604 OTOFQ9HC10 1997 aa12.36□□□□□ -0.43
VPS4B-204ENST00000589604 TNNI2P48788 182 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms