RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 PALD1Q9ULE6 856 aa34.18■■■■□ 3.06
LIG3-208ENST00000586407 CTNND1O60716 968 aaKnown RBP34.17■■■■□ 3.06
LIG3-208ENST00000586407 CAP1Q01518 475 aa34.17■■■■□ 3.06
LIG3-208ENST00000586407 MOGSQ13724 837 aa34.17■■■■□ 3.06
LIG3-208ENST00000586407 ZFYVE28Q9HCC9 887 aa34.17■■■■□ 3.06
LIG3-208ENST00000586407 IGSF3O75054 1194 aa34.16■■■■□ 3.06
LIG3-208ENST00000586407 PDE6AP16499 860 aa34.16■■■■□ 3.06
LIG3-208ENST00000586407 DCTPP1Q9H773 170 aa34.16■■■■□ 3.06
LIG3-208ENST00000586407 TTF1Q15361 905 aaPredicted RBP34.15■■■■□ 3.06
LIG3-208ENST00000586407 MYH7P12883 1935 aa34.14■■■■□ 3.06
LIG3-208ENST00000586407 ATP5JP18859 108 aa34.14■■■■□ 3.06
LIG3-208ENST00000586407 SLFNL1Q499Z3 407 aa34.14■■■■□ 3.06
LIG3-208ENST00000586407 SLC9C2Q5TAH2 1124 aa34.14■■■■□ 3.06
LIG3-208ENST00000586407 HPS5Q9UPZ3 1129 aa34.14■■■■□ 3.06
LIG3-208ENST00000586407 TRIM17Q9Y577 477 aa34.14■■■■□ 3.06
LIG3-208ENST00000586407 SP3Q02447 781 aa34.13■■■■□ 3.05
LIG3-208ENST00000586407 DNAJC18Q9H819 358 aa34.13■■■■□ 3.05
LIG3-208ENST00000586407 PAG1Q9NWQ8 432 aa34.13■■■■□ 3.05
LIG3-208ENST00000586407 AFG3L2Q9Y4W6 797 aa34.13■■■■□ 3.05
LIG3-208ENST00000586407 NAV1Q8NEY1 1877 aa34.13■■■■□ 3.05
LIG3-208ENST00000586407 ZNF532Q9HCE3 1301 aa34.12■■■■□ 3.05
LIG3-208ENST00000586407 USP5P45974 858 aa34.12■■■■□ 3.05
LIG3-208ENST00000586407 OTOP1Q7RTM1 612 aa34.12■■■■□ 3.05
LIG3-208ENST00000586407 RIOK1Q9BRS2 568 aaKnown RBP34.12■■■■□ 3.05
LIG3-208ENST00000586407 DHX36Q9H2U1 1008 aaKnown RBP34.12■■■■□ 3.05
LIG3-208ENST00000586407 PI4KBQ9UBF8 816 aa34.12■■■■□ 3.05
LIG3-208ENST00000586407 TRIM75PA6NK02 468 aa34.11■■■■□ 3.05
LIG3-208ENST00000586407 PDHXO00330 501 aa34.11■■■■□ 3.05
LIG3-208ENST00000586407 CXCL11O14625 94 aa34.11■■■■□ 3.05
LIG3-208ENST00000586407 SHROOM1Q2M3G4 852 aaPredicted RBP34.11■■■■□ 3.05
LIG3-208ENST00000586407 ANKRD23Q86SG2 305 aa34.11■■■■□ 3.05
LIG3-208ENST00000586407 ERO1AQ96HE7 468 aa34.11■■■■□ 3.05
LIG3-208ENST00000586407 DDX60LQ5H9U9 1706 aaKnown RBP34.1■■■■□ 3.05
LIG3-208ENST00000586407 CHGBP05060 677 aa34.1■■■■□ 3.05
LIG3-208ENST00000586407 TSHZ3Q63HK5 1081 aa34.1■■■■□ 3.05
LIG3-208ENST00000586407 GPAT2Q6NUI2 795 aa34.1■■■■□ 3.05
LIG3-208ENST00000586407 GADL1Q6ZQY3 521 aa34.1■■■■□ 3.05
LIG3-208ENST00000586407 HAUS7Q99871 368 aa34.1■■■■□ 3.05
LIG3-208ENST00000586407 HERC5Q9UII4 1024 aaKnown RBP34.1■■■■□ 3.05
LIG3-208ENST00000586407 A0A0G2JLL6 359 aaPredicted RBP34.09■■■■□ 3.05
LIG3-208ENST00000586407 MAGEB6P1A0A0J9YX57 407 aa34.09■■■■□ 3.05
LIG3-208ENST00000586407 TCRBV5S4A2TA0A5A2 114 aa34.09■■■■□ 3.05
LIG3-208ENST00000586407 ECM2O94769 699 aaPredicted RBP34.09■■■■□ 3.05
LIG3-208ENST00000586407 CAP2P40123 477 aa34.09■■■■□ 3.05
LIG3-208ENST00000586407 PKN2Q16513 984 aaKnown RBP34.09■■■■□ 3.05
LIG3-208ENST00000586407 PRRT2Q7Z6L0 340 aaPredicted RBP34.09■■■■□ 3.05
LIG3-208ENST00000586407 CRACR2BQ8N4Y2 399 aaPredicted RBP34.09■■■■□ 3.05
LIG3-208ENST00000586407 ZCCHC17Q9NP64 241 aaKnown RBP34.09■■■■□ 3.05
LIG3-208ENST00000586407 TLR2O60603 784 aa34.08■■■■□ 3.05
LIG3-208ENST00000586407 JAG1P78504 1218 aa34.08■■■■□ 3.05
LIG3-208ENST00000586407 FBXO46Q6PJ61 603 aaPredicted RBP34.08■■■■□ 3.05
LIG3-208ENST00000586407 CPA4Q9UI42 421 aa34.07■■■■□ 3.04
LIG3-208ENST00000586407 GDF11O95390 407 aa34.06■■■■□ 3.04
LIG3-208ENST00000586407 LCORLQ8N3X6 602 aa34.06■■■■□ 3.04
LIG3-208ENST00000586407 TRIM34Q9BYJ4 488 aa34.06■■■■□ 3.04
LIG3-208ENST00000586407 HLA-DOAP06340 250 aa34.05■■■■□ 3.04
LIG3-208ENST00000586407 SOX10P56693 466 aa34.05■■■■□ 3.04
LIG3-208ENST00000586407 CERS3Q8IU89 383 aa34.05■■■■□ 3.04
LIG3-208ENST00000586407 FOXP4Q8IVH2 680 aaPredicted RBP34.05■■■■□ 3.04
LIG3-208ENST00000586407 ARHGAP39Q9C0H5 1083 aa34.05■■■■□ 3.04
LIG3-208ENST00000586407 EFCC1Q9HA90 598 aa34.05■■■■□ 3.04
LIG3-208ENST00000586407 CYP2C8P10632 490 aa34.04■■■■□ 3.04
LIG3-208ENST00000586407 ADD2P35612 726 aa34.04■■■■□ 3.04
LIG3-208ENST00000586407 SPP2Q13103 211 aa34.04■■■■□ 3.04
LIG3-208ENST00000586407 ECHDC1Q9NTX5 307 aa34.04■■■■□ 3.04
LIG3-208ENST00000586407 ADGRA2Q96PE1 1338 aa34.04■■■■□ 3.04
LIG3-208ENST00000586407 LOC285556D6RIA3 1793 aa34.03■■■■□ 3.04
LIG3-208ENST00000586407 EVX2Q03828 476 aa34.03■■■■□ 3.04
LIG3-208ENST00000586407 TMED8Q6PL24 325 aaPredicted RBP34.03■■■■□ 3.04
LIG3-208ENST00000586407 METTL16Q86W50 562 aaKnown RBP34.03■■■■□ 3.04
LIG3-208ENST00000586407 ARMT1Q9H993 441 aa34.03■■■■□ 3.04
LIG3-208ENST00000586407 FASTKD5Q7L8L6 764 aaKnown RBP34.02■■■■□ 3.04
LIG3-208ENST00000586407 OTUD7AQ8TE49 926 aaPredicted RBP34.02■■■■□ 3.04
LIG3-208ENST00000586407 SDR42E1Q8WUS8 393 aa34.02■■■■□ 3.04
LIG3-208ENST00000586407 BAZ2AQ9UIF9 1905 aaKnown RBP34.02■■■■□ 3.04
LIG3-208ENST00000586407 C17orf99Q6UX52 265 aa34.01■■■■□ 3.03
LIG3-208ENST00000586407 CRNKL1Q9BZJ0 848 aaKnown RBP34.01■■■■□ 3.03
LIG3-208ENST00000586407 USP17L5A8MUK1 530 aa34■■■■□ 3.03
LIG3-208ENST00000586407 MBD4O95243 580 aa34■■■■□ 3.03
LIG3-208ENST00000586407 TREML2Q5T2D2 321 aa34■■■■□ 3.03
LIG3-208ENST00000586407 ZNF280CQ8ND82 737 aa34■■■■□ 3.03
LIG3-208ENST00000586407 PTPN22Q9Y2R2 807 aa34■■■■□ 3.03
LIG3-208ENST00000586407 PRKAB2O43741 272 aa33.99■■■■□ 3.03
LIG3-208ENST00000586407 PARK7Q99497 189 aaKnown RBP33.99■■■■□ 3.03
LIG3-208ENST00000586407 PLCD1P51178 756 aa33.98■■■■□ 3.03
LIG3-208ENST00000586407 HMGCS2P54868 508 aa33.98■■■■□ 3.03
LIG3-208ENST00000586407 LACTBP83111 547 aaPredicted RBP33.98■■■■□ 3.03
LIG3-208ENST00000586407 DDX24Q9GZR7 859 aaKnown RBP eCLIP33.98■■■■□ 3.03
LIG3-208ENST00000586407 ZBTB21Q9ULJ3 1066 aa33.98■■■■□ 3.03
LIG3-208ENST00000586407 CTGFP29279 349 aa33.97■■■■□ 3.03
LIG3-208ENST00000586407 CYP2D6P10635 497 aa33.96■■■■□ 3.03
LIG3-208ENST00000586407 TTC6Q86TZ1 520 aa33.96■■■■□ 3.03
LIG3-208ENST00000586407 GPATCH3Q96I76 525 aa33.96■■■■□ 3.03
LIG3-208ENST00000586407 MCM9Q9NXL9 1143 aa33.96■■■■□ 3.03
LIG3-208ENST00000586407 SERPINB13Q9UIV8 391 aa33.96■■■■□ 3.03
LIG3-208ENST00000586407 MGAMO43451 1857 aa33.95■■■■□ 3.03
LIG3-208ENST00000586407 POLR3DP05423 398 aaPredicted RBP33.95■■■■□ 3.03
LIG3-208ENST00000586407 ASNSP08243 561 aa33.95■■■■□ 3.03
LIG3-208ENST00000586407 EHD4Q9H223 541 aa33.95■■■■□ 3.03
LIG3-208ENST00000586407 DCP1AQ9NPI6 582 aaPredicted RBP33.95■■■■□ 3.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms