RNA–Protein interactions for RNA: ENST00000580073.1

TRAF4-214, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 449 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-214ENST00000580073 FAM110CQ1W6H9 321 aa16.43■□□□□ 0.22
TRAF4-214ENST00000580073 ZFPM1Q8IX07 1006 aa16.43■□□□□ 0.22
TRAF4-214ENST00000580073 SPATA5Q8NB90 893 aa16.43■□□□□ 0.22
TRAF4-214ENST00000580073 DPF3Q92784 378 aa16.43■□□□□ 0.22
TRAF4-214ENST00000580073 SHISA4Q96DD7 197 aa16.43■□□□□ 0.22
TRAF4-214ENST00000580073 RAI14Q9P0K7 980 aa16.43■□□□□ 0.22
TRAF4-214ENST00000580073 HERC5Q9UII4 1024 aaKnown RBP16.43■□□□□ 0.22
TRAF4-214ENST00000580073 CEP290O15078 2479 aa16.43■□□□□ 0.22
TRAF4-214ENST00000580073 ADCY3O60266 1144 aa16.42■□□□□ 0.22
TRAF4-214ENST00000580073 RLBP1P12271 317 aa16.42■□□□□ 0.22
TRAF4-214ENST00000580073 GCLCP48506 637 aaPredicted RBP16.42■□□□□ 0.22
TRAF4-214ENST00000580073 ATF7IPQ6VMQ6 1270 aa16.42■□□□□ 0.22
TRAF4-214ENST00000580073 SH3BP5LQ7L8J4 393 aa16.42■□□□□ 0.22
TRAF4-214ENST00000580073 CLUAP1Q96AJ1 413 aa16.42■□□□□ 0.22
TRAF4-214ENST00000580073 DDX4Q9NQI0 724 aaKnown RBP16.42■□□□□ 0.22
TRAF4-214ENST00000580073 NR2E3Q9Y5X4 410 aa16.42■□□□□ 0.22
TRAF4-214ENST00000580073 MYH8P13535 1937 aa16.42■□□□□ 0.22
TRAF4-214ENST00000580073 FARP2O94887 1054 aaPredicted RBP16.41■□□□□ 0.22
TRAF4-214ENST00000580073 BAG3O95817 575 aa16.41■□□□□ 0.22
TRAF4-214ENST00000580073 FXR1P51114 621 aaKnown RBP eCLIP16.41■□□□□ 0.22
TRAF4-214ENST00000580073 RHBDL3P58872 404 aa16.41■□□□□ 0.22
TRAF4-214ENST00000580073 TEX11Q8IYF3 940 aa16.41■□□□□ 0.22
TRAF4-214ENST00000580073 NSUN4Q96CB9 384 aaKnown RBP16.41■□□□□ 0.22
TRAF4-214ENST00000580073 DHX36Q9H2U1 1008 aaKnown RBP16.41■□□□□ 0.22
TRAF4-214ENST00000580073 HMG20BQ9P0W2 317 aa16.41■□□□□ 0.22
TRAF4-214ENST00000580073 LRP2BPQ9P2M1 347 aa16.41■□□□□ 0.22
TRAF4-214ENST00000580073 COLQQ9Y215 455 aaPredicted RBP16.41■□□□□ 0.22
TRAF4-214ENST00000580073 ALPK3Q96L96 1907 aa16.41■□□□□ 0.22
TRAF4-214ENST00000580073 H0YGN5 161 aa16.4■□□□□ 0.22
TRAF4-214ENST00000580073 FLT3LGP49771 235 aa16.4■□□□□ 0.22
TRAF4-214ENST00000580073 ZKSCAN2Q63HK3 967 aa16.4■□□□□ 0.22
TRAF4-214ENST00000580073 ZNF280CQ8ND82 737 aa16.4■□□□□ 0.22
TRAF4-214ENST00000580073 U2AF1L4Q8WU68 220 aaKnown RBP16.4■□□□□ 0.22
TRAF4-214ENST00000580073 TRIM34Q9BYJ4 488 aa16.4■□□□□ 0.22
TRAF4-214ENST00000580073 NAV1Q8NEY1 1877 aa16.39■□□□□ 0.22
TRAF4-214ENST00000580073 INHAP05111 366 aa16.39■□□□□ 0.21
TRAF4-214ENST00000580073 OS9Q13438 667 aaPredicted RBP16.39■□□□□ 0.21
TRAF4-214ENST00000580073 CCDC158Q5M9N0 1113 aa16.39■□□□□ 0.21
TRAF4-214ENST00000580073 TTC39AQ5SRH9 613 aa16.39■□□□□ 0.21
TRAF4-214ENST00000580073 ANKRD13CQ8N6S4 541 aa16.39■□□□□ 0.21
TRAF4-214ENST00000580073 GINM1Q9NU53 330 aa16.39■□□□□ 0.21
TRAF4-214ENST00000580073 GABRQQ9UN88 632 aa16.39■□□□□ 0.21
TRAF4-214ENST00000580073 PLXNB2O15031 1838 aa16.39■□□□□ 0.21
TRAF4-214ENST00000580073 DDX60LQ5H9U9 1706 aaKnown RBP16.39■□□□□ 0.21
TRAF4-214ENST00000580073 USP17L5A8MUK1 530 aa16.38■□□□□ 0.21
TRAF4-214ENST00000580073 SGPL1O95470 568 aa16.38■□□□□ 0.21
TRAF4-214ENST00000580073 ASNSP08243 561 aa16.38■□□□□ 0.21
TRAF4-214ENST00000580073 CAP2P40123 477 aa16.38■□□□□ 0.21
TRAF4-214ENST00000580073 NAA16Q6N069 864 aaPredicted RBP16.38■□□□□ 0.21
TRAF4-214ENST00000580073 CERS3Q8IU89 383 aa16.38■□□□□ 0.21
TRAF4-214ENST00000580073 TMEM57Q8N5G2 664 aa16.38■□□□□ 0.21
TRAF4-214ENST00000580073 GPR108Q9NPR9 543 aa16.38■□□□□ 0.21
TRAF4-214ENST00000580073 PI4KBQ9UBF8 816 aa16.38■□□□□ 0.21
TRAF4-214ENST00000580073 FRMPD3Q5JV73 1810 aa16.38■□□□□ 0.21
TRAF4-214ENST00000580073 TRIOBPQ9H2D6 2365 aa16.37■□□□□ 0.21
TRAF4-214ENST00000580073 MCAMP43121 646 aa16.37■□□□□ 0.21
TRAF4-214ENST00000580073 C20orf194Q5TEA3 1177 aa16.37■□□□□ 0.21
TRAF4-214ENST00000580073 CHRDL2Q6WN34 429 aa16.37■□□□□ 0.21
TRAF4-214ENST00000580073 UBE2Q1Q7Z7E8 422 aa16.37■□□□□ 0.21
TRAF4-214ENST00000580073 PANK1Q8TE04 598 aa16.37■□□□□ 0.21
TRAF4-214ENST00000580073 GTF3C2Q8WUA4 911 aaPredicted RBP16.37■□□□□ 0.21
TRAF4-214ENST00000580073 UNC93B1Q9H1C4 597 aa16.37■□□□□ 0.21
TRAF4-214ENST00000580073 TMOD4Q9NZQ9 345 aa16.37■□□□□ 0.21
TRAF4-214ENST00000580073 TAOK2Q9UL54 1235 aa16.37■□□□□ 0.21
TRAF4-214ENST00000580073 A0A1W2PPC1 479 aa16.36■□□□□ 0.21
TRAF4-214ENST00000580073 HMGCRP04035 888 aa16.36■□□□□ 0.21
TRAF4-214ENST00000580073 HLA-DOAP06340 250 aa16.36■□□□□ 0.21
TRAF4-214ENST00000580073 HMGCS2P54868 508 aa16.36■□□□□ 0.21
TRAF4-214ENST00000580073 IRX3P78415 501 aaPredicted RBP16.36■□□□□ 0.21
TRAF4-214ENST00000580073 SPP2Q13103 211 aa16.36■□□□□ 0.21
TRAF4-214ENST00000580073 CRACR2BQ8N4Y2 399 aaPredicted RBP16.36■□□□□ 0.21
TRAF4-214ENST00000580073 TFRCP02786 760 aaKnown RBP16.35■□□□□ 0.21
TRAF4-214ENST00000580073 ELNP15502 786 aa16.35■□□□□ 0.21
TRAF4-214ENST00000580073 TNNI3KQ59H18 835 aa16.35■□□□□ 0.21
TRAF4-214ENST00000580073 SH3D19Q5HYK7 790 aa16.35■□□□□ 0.21
TRAF4-214ENST00000580073 TREML2Q5T2D2 321 aa16.35■□□□□ 0.21
TRAF4-214ENST00000580073 TMED8Q6PL24 325 aaPredicted RBP16.35■□□□□ 0.21
TRAF4-214ENST00000580073 PI16Q6UXB8 463 aa16.35■□□□□ 0.21
TRAF4-214ENST00000580073 FTSJ3Q8IY81 847 aaKnown RBP16.35■□□□□ 0.21
TRAF4-214ENST00000580073 ANKLE1Q8NAG6 615 aa16.35■□□□□ 0.21
TRAF4-214ENST00000580073 ZNF384Q8TF68 577 aa16.35■□□□□ 0.21
TRAF4-214ENST00000580073 PAK6Q9NQU5 681 aaPredicted RBP16.35■□□□□ 0.21
TRAF4-214ENST00000580073 FPGT-TNNI3KV9GXZ4 949 aa16.35■□□□□ 0.21
TRAF4-214ENST00000580073 PNMA6EA0A0J9YXQ4 647 aa16.34■□□□□ 0.21
TRAF4-214ENST00000580073 FAM196BA6NMK8 535 aa16.34■□□□□ 0.21
TRAF4-214ENST00000580073 C19orf81C9J6K1 198 aa16.34■□□□□ 0.21
TRAF4-214ENST00000580073 EVI5O60447 810 aa16.34■□□□□ 0.21
TRAF4-214ENST00000580073 TBC1D9Q6ZT07 1266 aa16.34■□□□□ 0.21
TRAF4-214ENST00000580073 SOCS4Q8WXH5 440 aa16.34■□□□□ 0.21
TRAF4-214ENST00000580073 DEFB118Q96PH6 123 aa16.34■□□□□ 0.21
TRAF4-214ENST00000580073 WDR18Q9BV38 432 aa16.34■□□□□ 0.21
TRAF4-214ENST00000580073 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.34■□□□□ 0.211e-9■■■■■ 27
TRAF4-214ENST00000580073 AATFQ9NY61 560 aaKnown RBP eCLIP16.34■□□□□ 0.21
TRAF4-214ENST00000580073 FLT1P17948 1338 aa16.34■□□□□ 0.21
TRAF4-214ENST00000580073 PDE3AQ14432 1141 aa16.33■□□□□ 0.2
TRAF4-214ENST00000580073 CCDC84Q86UT8 332 aaPredicted RBP16.33■□□□□ 0.2
TRAF4-214ENST00000580073 TRMT44Q8IYL2 757 aaKnown RBP16.33■□□□□ 0.2
TRAF4-214ENST00000580073 SH3RF3Q8TEJ3 882 aaPredicted RBP16.33■□□□□ 0.2
TRAF4-214ENST00000580073 ZNF512BQ96KM6 892 aaPredicted RBP16.33■□□□□ 0.2
TRAF4-214ENST00000580073 ASCC2Q9H1I8 757 aaPredicted RBP16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms