RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 CCAR1Q8IX12 1150 aaKnown RBP16.42■□□□□ 0.22
CCDC40-208ENST00000572270 IL27Q8NEV9 243 aa16.42■□□□□ 0.22
CCDC40-208ENST00000572270 PRDM5Q9NQX1 630 aaPredicted RBP16.42■□□□□ 0.22
CCDC40-208ENST00000572270 MORF4L1Q9UBU8 362 aa16.42■□□□□ 0.22
CCDC40-208ENST00000572270 ATP11BQ9Y2G3 1177 aa16.42■□□□□ 0.22
CCDC40-208ENST00000572270 PDE8BO95263 885 aa16.41■□□□□ 0.22
CCDC40-208ENST00000572270 RGS2P41220 211 aa16.41■□□□□ 0.22
CCDC40-208ENST00000572270 HMGCS2P54868 508 aa16.41■□□□□ 0.22
CCDC40-208ENST00000572270 IRX3P78415 501 aaPredicted RBP16.41■□□□□ 0.22
CCDC40-208ENST00000572270 MAP3K10Q02779 954 aa16.41■□□□□ 0.22
CCDC40-208ENST00000572270 SPP2Q13103 211 aa16.41■□□□□ 0.22
CCDC40-208ENST00000572270 ATXN2LQ8WWM7 1075 aaKnown RBP16.41■□□□□ 0.22
CCDC40-208ENST00000572270 TBC1D2Q9BYX2 928 aa16.41■□□□□ 0.22
CCDC40-208ENST00000572270 KIF16BQ96L93 1317 aa16.41■□□□□ 0.22
CCDC40-208ENST00000572270 F6X3S4 739 aa16.4■□□□□ 0.22
CCDC40-208ENST00000572270 LDHBP07195 334 aaKnown RBP16.4■□□□□ 0.22
CCDC40-208ENST00000572270 MAPK4P31152 587 aa16.4■□□□□ 0.22
CCDC40-208ENST00000572270 ZNF280CQ8ND82 737 aa16.4■□□□□ 0.22
CCDC40-208ENST00000572270 ADAMTS19Q8TE59 1207 aa16.4■□□□□ 0.22
CCDC40-208ENST00000572270 BADQ92934 168 aa16.4■□□□□ 0.22
CCDC40-208ENST00000572270 UHRF1Q96T88 793 aaPredicted RBP16.4■□□□□ 0.22
CCDC40-208ENST00000572270 APBA2Q99767 749 aa16.4■□□□□ 0.22
CCDC40-208ENST00000572270 IDI2Q9BXS1 227 aa16.4■□□□□ 0.22
CCDC40-208ENST00000572270 DNM1LO00429 736 aa16.39■□□□□ 0.21
CCDC40-208ENST00000572270 MSCO60682 206 aa16.39■□□□□ 0.21
CCDC40-208ENST00000572270 PRDX5P30044 214 aa16.39■□□□□ 0.21
CCDC40-208ENST00000572270 PUM3Q15397 648 aaKnown RBP16.39■□□□□ 0.21
CCDC40-208ENST00000572270 LRRC24Q50LG9 513 aa16.39■□□□□ 0.21
CCDC40-208ENST00000572270 GPRC5AQ8NFJ5 357 aa16.39■□□□□ 0.21
CCDC40-208ENST00000572270 CWC22Q9HCG8 908 aaKnown RBP16.39■□□□□ 0.21
CCDC40-208ENST00000572270 THEGQ9P2T0 379 aa16.39■□□□□ 0.21
CCDC40-208ENST00000572270 ATAD5Q96QE3 1844 aa16.39■□□□□ 0.21
CCDC40-208ENST00000572270 GRIN2CQ14957 1233 aa16.38■□□□□ 0.21
CCDC40-208ENST00000572270 CCL14Q16627 93 aa16.38■□□□□ 0.21
CCDC40-208ENST00000572270 SH3BP5LQ7L8J4 393 aa16.38■□□□□ 0.21
CCDC40-208ENST00000572270 VGLL2Q8N8G2 317 aa16.38■□□□□ 0.21
CCDC40-208ENST00000572270 RNPC3Q96LT9 517 aaKnown RBP16.38■□□□□ 0.21
CCDC40-208ENST00000572270 C1QTNF1Q9BXJ1 281 aa16.38■□□□□ 0.21
CCDC40-208ENST00000572270 HCN4Q9Y3Q4 1203 aa16.38■□□□□ 0.21
CCDC40-208ENST00000572270 MYH2Q9UKX2 1941 aa16.38■□□□□ 0.21
CCDC40-208ENST00000572270 DDTLA6NHG4 134 aaPredicted RBP16.37■□□□□ 0.21
CCDC40-208ENST00000572270 SLURP2P0DP57 97 aa16.37■□□□□ 0.21
CCDC40-208ENST00000572270 CNGA1P29973 690 aa16.37■□□□□ 0.21
CCDC40-208ENST00000572270 PICALMQ13492 652 aa16.37■□□□□ 0.21
CCDC40-208ENST00000572270 MFSD14CQ5VZR4 134 aa16.37■□□□□ 0.21
CCDC40-208ENST00000572270 PPM1EQ8WY54 764 aa16.37■□□□□ 0.21
CCDC40-208ENST00000572270 LPAR1Q92633 364 aa16.37■□□□□ 0.21
CCDC40-208ENST00000572270 ASB2Q96Q27 587 aa16.37■□□□□ 0.21
CCDC40-208ENST00000572270 GAS2L1Q99501 681 aaPredicted RBP16.37■□□□□ 0.21
CCDC40-208ENST00000572270 OSBPL5Q9H0X9 879 aaPredicted RBP16.37■□□□□ 0.21
CCDC40-208ENST00000572270 DDX20Q9UHI6 824 aaKnown RBP16.37■□□□□ 0.21
CCDC40-208ENST00000572270 SLC5A1P13866 664 aa16.36■□□□□ 0.21
CCDC40-208ENST00000572270 USP6NLQ92738 828 aa16.36■□□□□ 0.21
CCDC40-208ENST00000572270 SUCLG2Q96I99 432 aa16.36■□□□□ 0.21
CCDC40-208ENST00000572270 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.36■□□□□ 0.21
CCDC40-208ENST00000572270 AS3MTQ9HBK9 375 aa16.36■□□□□ 0.21
CCDC40-208ENST00000572270 RLFQ13129 1914 aa16.36■□□□□ 0.21
CCDC40-208ENST00000572270 SYNGAP1Q96PV0 1343 aa16.36■□□□□ 0.21
CCDC40-208ENST00000572270 RFX7Q2KHR2 1363 aa16.36■□□□□ 0.21
CCDC40-208ENST00000572270 DNAJB2P25686 324 aa16.35■□□□□ 0.21
CCDC40-208ENST00000572270 MRPS5P82675 430 aaKnown RBP16.35■□□□□ 0.21
CCDC40-208ENST00000572270 SH3D19Q5HYK7 790 aa16.35■□□□□ 0.21
CCDC40-208ENST00000572270 MORN1Q5T089 497 aa16.35■□□□□ 0.21
CCDC40-208ENST00000572270 GPR142Q7Z601 462 aa16.35■□□□□ 0.21
CCDC40-208ENST00000572270 PLEKHH3Q7Z736 793 aa16.35■□□□□ 0.21
CCDC40-208ENST00000572270 TMOD4Q9NZQ9 345 aa16.35■□□□□ 0.21
CCDC40-208ENST00000572270 ARIH1Q9Y4X5 557 aaPredicted RBP16.35■□□□□ 0.21
CCDC40-208ENST00000572270 USP17L5A8MUK1 530 aa16.34■□□□□ 0.21
CCDC40-208ENST00000572270 KBTBD13C9JR72 458 aa16.34■□□□□ 0.21
CCDC40-208ENST00000572270 TBC1D12O60347 775 aa16.34■□□□□ 0.21
CCDC40-208ENST00000572270 ALDH1L1O75891 902 aa16.34■□□□□ 0.21
CCDC40-208ENST00000572270 FGFR2P21802 821 aa16.34■□□□□ 0.21
CCDC40-208ENST00000572270 HERVK_113P62684 666 aa16.34■□□□□ 0.21
CCDC40-208ENST00000572270 ERVK-9P63128 1117 aa16.34■□□□□ 0.21
CCDC40-208ENST00000572270 ERVK-24P63145 666 aa16.34■□□□□ 0.21
CCDC40-208ENST00000572270 SLC39A5Q6ZMH5 540 aa16.34■□□□□ 0.21
CCDC40-208ENST00000572270 P2RX7Q99572 595 aaKnown RBP16.34■□□□□ 0.21
CCDC40-208ENST00000572270 TXNRD2Q9NNW7 524 aa16.34■□□□□ 0.21
CCDC40-208ENST00000572270 PEX10O60683 326 aa16.33■□□□□ 0.2
CCDC40-208ENST00000572270 TRIM60Q495X7 471 aa16.33■□□□□ 0.2
CCDC40-208ENST00000572270 SLF2Q8IX21 1173 aa16.33■□□□□ 0.2
CCDC40-208ENST00000572270 GTF3C2Q8WUA4 911 aaPredicted RBP16.33■□□□□ 0.2
CCDC40-208ENST00000572270 LPIN2Q92539 896 aa16.33■□□□□ 0.2
CCDC40-208ENST00000572270 ZNF576Q9H609 170 aa16.33■□□□□ 0.2
CCDC40-208ENST00000572270 BICC1Q9H694 974 aaKnown RBP16.33■□□□□ 0.2
CCDC40-208ENST00000572270 DDX4Q9NQI0 724 aaKnown RBP16.33■□□□□ 0.2
CCDC40-208ENST00000572270 PDLIM7Q9NR12 457 aa16.33■□□□□ 0.2
CCDC40-208ENST00000572270 GNL3LQ9NVN8 582 aaKnown RBP16.33■□□□□ 0.2
CCDC40-208ENST00000572270 UTYO14607 1347 aa16.33■□□□□ 0.2
CCDC40-208ENST00000572270 FAM196BA6NMK8 535 aa16.32■□□□□ 0.2
CCDC40-208ENST00000572270 GAKO14976 1311 aa16.32■□□□□ 0.2
CCDC40-208ENST00000572270 GLRX3O76003 335 aaKnown RBP16.32■□□□□ 0.2
CCDC40-208ENST00000572270 HOXA7P31268 230 aaPredicted RBP16.32■□□□□ 0.2
CCDC40-208ENST00000572270 MAP2K5Q13163 448 aa16.32■□□□□ 0.2
CCDC40-208ENST00000572270 GJC2Q5T442 439 aaPredicted RBP16.32■□□□□ 0.2
CCDC40-208ENST00000572270 SLC4A10Q6U841 1118 aa16.32■□□□□ 0.2
CCDC40-208ENST00000572270 DZIP1Q86YF9 867 aaKnown RBP16.32■□□□□ 0.2
CCDC40-208ENST00000572270 ZGPATQ8N5A5 531 aaKnown RBP16.32■□□□□ 0.2
CCDC40-208ENST00000572270 ARRDC4Q8NCT1 418 aa16.32■□□□□ 0.2
CCDC40-208ENST00000572270 EDC3Q96F86 508 aaKnown RBP16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms