RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 BCL11BQ9C0K0 894 aaPredicted RBP11.5□□□□□ -0.57
VPS53-206ENST00000570359 RNF41Q9H4P4 317 aaPredicted RBP11.5□□□□□ -0.57
VPS53-206ENST00000570359 ZNF219Q9P2Y4 722 aaPredicted RBP11.5□□□□□ -0.57
VPS53-206ENST00000570359 NRBP1Q9UHY1 535 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 AKAP17AQ02040 695 aaKnown RBP11.49□□□□□ -0.57
VPS53-206ENST00000570359 UVSSAQ2YD98 709 aa11.49□□□□□ -0.57
VPS53-206ENST00000570359 PRR5LQ6MZQ0 368 aa11.49□□□□□ -0.57
VPS53-206ENST00000570359 FBXO33Q7Z6M2 555 aa11.49□□□□□ -0.57
VPS53-206ENST00000570359 DIS3L2Q8IYB7 885 aaKnown RBP11.49□□□□□ -0.57
VPS53-206ENST00000570359 RTEL1Q9NZ71 1219 aa11.49□□□□□ -0.57
VPS53-206ENST00000570359 CASZ1Q86V15 1759 aa11.49□□□□□ -0.57
VPS53-206ENST00000570359 C6orf229H3BNL8 230 aa11.49□□□□□ -0.57
VPS53-206ENST00000570359 PFKFB1P16118 471 aa11.49□□□□□ -0.57
VPS53-206ENST00000570359 PTGS1P23219 599 aa11.49□□□□□ -0.57
VPS53-206ENST00000570359 TM4SF1P30408 202 aa11.49□□□□□ -0.57
VPS53-206ENST00000570359 RC3H1Q5TC82 1133 aaKnown RBP11.49□□□□□ -0.57
VPS53-206ENST00000570359 AOPEPQ8N6M6 819 aa11.49□□□□□ -0.57
VPS53-206ENST00000570359 PDILTQ8N807 584 aa11.49□□□□□ -0.57
VPS53-206ENST00000570359 FANCBQ8NB91 859 aa11.49□□□□□ -0.57
VPS53-206ENST00000570359 SLC44A5Q8NCS7 719 aa11.49□□□□□ -0.57
VPS53-206ENST00000570359 ANKRD2Q9GZV1 360 aa11.49□□□□□ -0.57
VPS53-206ENST00000570359 TSPY2A6NKD2 308 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 C4AP0C0L4 1744 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 LAMB2P55268 1798 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 GPSM2P81274 684 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 HSP90AA4PQ58FG1 418 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 SLC10A5Q5PT55 438 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 MSL1Q68DK7 614 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 BRAPQ7Z569 592 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 MAPKAPK5Q8IW41 473 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 FBXL16Q8N461 479 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 SH3RF3Q8TEJ3 882 aaPredicted RBP11.48□□□□□ -0.57
VPS53-206ENST00000570359 CRNKL1Q9BZJ0 848 aaKnown RBP11.48□□□□□ -0.57
VPS53-206ENST00000570359 MYH15Q9Y2K3 1946 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 DOCK2Q92608 1830 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 C4BP0C0L5 1744 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 LIFRP42702 1097 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 GRIN1Q05586 938 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 KIAA2012Q0VF49 1180 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 SGMS1Q86VZ5 419 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 KCNG4Q8TDN1 519 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 TGFBRAP1Q8WUH2 860 aa11.48□□□□□ -0.57
VPS53-206ENST00000570359 ZSCAN10Q96SZ4 725 aaPredicted RBP11.48□□□□□ -0.57
VPS53-206ENST00000570359 V9GY48 417 aaPredicted RBP11.48□□□□□ -0.57
VPS53-206ENST00000570359 RREB1Q92766 1687 aa11.47□□□□□ -0.57
VPS53-206ENST00000570359 WDR19Q8NEZ3 1342 aa11.47□□□□□ -0.57
VPS53-206ENST00000570359 SERPINB2P05120 415 aa11.47□□□□□ -0.57
VPS53-206ENST00000570359 LDHBP07195 334 aaKnown RBP11.47□□□□□ -0.57
VPS53-206ENST00000570359 SAFBQ15424 915 aaKnown RBP eCLIP11.47□□□□□ -0.57
VPS53-206ENST00000570359 NOM1Q5C9Z4 860 aaKnown RBP11.47□□□□□ -0.57
VPS53-206ENST00000570359 IQCA1Q86XH1 822 aa11.47□□□□□ -0.57
VPS53-206ENST00000570359 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.47□□□□□ -0.57
VPS53-206ENST00000570359 CABP5Q9NP86 173 aa11.47□□□□□ -0.57
VPS53-206ENST00000570359 DCP1AQ9NPI6 582 aaPredicted RBP11.47□□□□□ -0.57
VPS53-206ENST00000570359 TRPC5Q9UL62 973 aaPredicted RBP11.47□□□□□ -0.57
VPS53-206ENST00000570359 TNRC6CQ9HCJ0 1690 aaKnown RBP11.47□□□□□ -0.57
VPS53-206ENST00000570359 SPATA31A6Q5VVP1 1343 aa11.47□□□□□ -0.57
VPS53-206ENST00000570359 ZNF202O95125 648 aa11.47□□□□□ -0.57
VPS53-206ENST00000570359 FMNL1O95466 1100 aaPredicted RBP11.47□□□□□ -0.57
VPS53-206ENST00000570359 LRMPQ12912 555 aa11.47□□□□□ -0.57
VPS53-206ENST00000570359 GRAPQ13588 217 aa11.47□□□□□ -0.57
VPS53-206ENST00000570359 STX1AQ16623 288 aa11.47□□□□□ -0.57
VPS53-206ENST00000570359 PTPN21Q16825 1174 aa11.47□□□□□ -0.57
VPS53-206ENST00000570359 DPCR1Q3MIW9 517 aa11.47□□□□□ -0.57
VPS53-206ENST00000570359 ADALQ6DHV7 355 aa11.47□□□□□ -0.57
VPS53-206ENST00000570359 RASGRP2Q7LDG7 609 aa11.47□□□□□ -0.57
VPS53-206ENST00000570359 CATIPQ7Z7H3 387 aa11.47□□□□□ -0.57
VPS53-206ENST00000570359 FMR1NBQ8N0W7 255 aaPredicted RBP11.47□□□□□ -0.57
VPS53-206ENST00000570359 GRAPLQ8TC17 118 aaPredicted RBP11.47□□□□□ -0.57
VPS53-206ENST00000570359 UTRNP46939 3433 aa11.47□□□□□ -0.57
VPS53-206ENST00000570359 GYS1P13807 737 aa11.46□□□□□ -0.57
VPS53-206ENST00000570359 ENGASEQ8NFI3 743 aa11.46□□□□□ -0.57
VPS53-206ENST00000570359 POLR3EQ9NVU0 708 aa11.46□□□□□ -0.57
VPS53-206ENST00000570359 PNOCQ13519 176 aa11.46□□□□□ -0.58
VPS53-206ENST00000570359 CCDC186Q7Z3E2 898 aa11.46□□□□□ -0.58
VPS53-206ENST00000570359 CRACR2BQ8N4Y2 399 aaPredicted RBP11.46□□□□□ -0.58
VPS53-206ENST00000570359 ARID3AQ99856 593 aa11.46□□□□□ -0.58
VPS53-206ENST00000570359 PYCARDQ9ULZ3 195 aa11.46□□□□□ -0.58
VPS53-206ENST00000570359 PCDHB6Q9Y5E3 794 aa11.46□□□□□ -0.58
VPS53-206ENST00000570359 SCN7AQ01118 1682 aa11.46□□□□□ -0.58
VPS53-206ENST00000570359 CACNA1SQ13698 1873 aa11.46□□□□□ -0.58
VPS53-206ENST00000570359 FOXN1O15353 648 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 SLC3A2P08195 630 aaKnown RBP11.45□□□□□ -0.58
VPS53-206ENST00000570359 IFNAR1P17181 557 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 SYKP43405 635 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 ST5P78524 1137 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 FILIP1Q7Z7B0 1213 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 NOSTRINQ8IVI9 506 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 CPVLQ9H3G5 476 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 USP17L3A6NCW0 530 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 USP17L4A6NCW7 530 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 YEATS4O95619 227 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 VEGFAP15692 232 aaPredicted RBP11.45□□□□□ -0.58
VPS53-206ENST00000570359 ARID5BQ14865 1188 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 SHC4Q6S5L8 630 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 USP17L1Q7RTZ2 530 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 GRAMD1CQ8IYS0 662 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 CERKQ8TCT0 537 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 MXD3Q9BW11 206 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 MKNK2Q9HBH9 465 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms