RNA–Protein interactions for RNA: ENST00000566550.1

HERPUD1-211, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 511 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-211ENST00000566550 KDM2BQ8NHM5 1336 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 B2RBV5 119 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 TGFBR3LH3BV60 316 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 IRS4O14654 1257 aaPredicted RBP4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 DDAH1O94760 285 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 CELA3AP09093 270 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 MYCLP1P12525 358 aaPredicted RBP4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 CPB1P15086 417 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 EPB42P16452 691 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 PDE6BP35913 854 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 LIG3P49916 1009 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 SAFB2Q14151 953 aaKnown RBP eCLIP4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 DTHD1Q6ZMT9 781 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 GALNT12Q8IXK2 581 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 TMEM130Q8N3G9 435 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 UBR7Q8N806 425 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 C1orf127Q8N9H9 656 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 ZNF280CQ8ND82 737 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 PHC3Q8NDX5 983 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 C3orf58Q8NDZ4 430 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 CHAC2Q8WUX2 184 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 TTC9Q92623 222 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 RHOVQ96L33 236 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 KANSL3Q9P2N6 904 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 STOML1Q9UBI4 398 aa4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 RTCBQ9Y3I0 505 aaKnown RBP4.38□□□□□ -1.71
HERPUD1-211ENST00000566550 PPFIA4O75335 1185 aa4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 GJB6O95452 261 aa4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 WNT11O96014 354 aa4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 ATF3P18847 181 aa4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 GNALP38405 381 aa4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 ARSDP51689 593 aa4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 EXOSC10Q01780 885 aaKnown RBP4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 SSRP1Q08945 709 aaKnown RBP4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 CAMK2GQ13555 558 aaPredicted RBP4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 PPP2R5AQ15172 486 aa4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 LRRC41Q15345 812 aa4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 HSP90AB4PQ58FF6 505 aa4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 DALRD3Q5D0E6 543 aaKnown RBP4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 SPTY2D1Q68D10 685 aaPredicted RBP4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 PDE12Q6L8Q7 609 aaKnown RBP4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 ILDR2Q71H61 639 aa4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 SPATC1Q76KD6 591 aa4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 BTLAQ7Z6A9 289 aa4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 FBXO27Q8NI29 283 aa4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 THAP3Q8WTV1 239 aaPredicted RBP4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 SMAD5Q99717 465 aaKnown RBP4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 GSX2Q9BZM3 304 aa4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 CHRDQ9H2X0 955 aa4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 GEMIN8Q9NWZ8 242 aaKnown RBP4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 TRAK1Q9UPV9 953 aa4.37□□□□□ -1.71
HERPUD1-211ENST00000566550 HMGB1P1B2RPK0 211 aaPredicted RBP4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 TSPAN6O43657 245 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 ALDH1L1O75891 902 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 KRT18P05783 430 aaKnown RBP4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 VIL1P09327 827 aaKnown RBP4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 RLBP1P12271 317 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 NFKB1P19838 968 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 LMNB1P20700 586 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 GARTP22102 1010 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 CES1P23141 567 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 UBE4AQ14139 1066 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 BRD3Q15059 726 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 TTF1Q15361 905 aaPredicted RBP4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 FXNQ16595 210 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 SYCP2LQ5T4T6 812 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 GK5Q6ZS86 529 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 KRT26Q7Z3Y9 468 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 DDX42Q86XP3 938 aaKnown RBP eCLIP4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 MAP4K3Q8IVH8 894 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 GLIS3Q8NEA6 775 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 UBA5Q9GZZ9 404 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 TNKS2Q9H2K2 1166 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 PNMA2Q9UL42 364 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 COMMD10Q9Y6G5 202 aa4.36□□□□□ -1.71
HERPUD1-211ENST00000566550 A0A1W2PP55 124 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 DHX15O43143 795 aaKnown RBP4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 GREM1O60565 184 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 SCGB1D2O95969 90 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 LDHAP00338 332 aaKnown RBP4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 TGFB1P01137 390 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 GLB1P16278 677 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 NFKB2Q00653 900 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 C4orf46Q504U0 113 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 CCSAPQ6IQ19 270 aaPredicted RBP4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 TTBK2Q6IQ55 1244 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 XKR5Q6UX68 686 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 SV2BQ7L1I2 683 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 NIM1KQ8IY84 436 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 ATL2Q8NHH9 583 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 JARID2Q92833 1246 aaPredicted RBP4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 PLD4Q96BZ4 506 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 MFSD3Q96ES6 412 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 TERF2IPQ9NYB0 399 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 ABI2Q9NYB9 513 aaPredicted RBP4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 MCM8Q9UJA3 840 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 NAGPAQ9UK23 515 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 PLAAQ9Y263 795 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 KCNMB2Q9Y691 235 aa4.35□□□□□ -1.71
HERPUD1-211ENST00000566550 A0A0U1RQG5 324 aaPredicted RBP4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms