RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, human

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-223	ENST00000566472	NUTM2E	B1AL46	878 aa	Predicted RBP	7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	SNAP23	O00161	211 aa		7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	RXRA	P19793	462 aa		7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	RPS8	P62241	208 aa	Known RBP	7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	SBK1	Q52WX2	424 aa		7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	SPTY2D1	Q68D10	685 aa	Predicted RBP	7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	CCDC186	Q7Z3E2	898 aa		7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	CERS3	Q8IU89	383 aa		7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	NUTM2A	Q8IVF1	878 aa	Predicted RBP	7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	DIS3L2	Q8IYB7	885 aa	Known RBP	7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	FNBP4	Q8N3X1	1017 aa	Predicted RBP	7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	AOPEP	Q8N6M6	819 aa		7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	KRI1	Q8N9T8	703 aa	Known RBP	7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	MIGA1	Q8NAN2	632 aa		7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	FANCB	Q8NB91	859 aa		7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	CCDC150	Q8NCX0	1101 aa		7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	NKX2-3	Q8TAU0	364 aa		7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	PHKB	Q93100	1093 aa		7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	FAM84B	Q96KN1	310 aa	Predicted RBP	7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	CRNKL1	Q9BZJ0	848 aa	Known RBP	7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	KCND1	Q9NSA2	647 aa		7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	FAM13B	Q9NYF5	915 aa		7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	ARPP21	Q9UBL0	812 aa	Predicted RBP	7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	COL4A1	P02462	1669 aa		7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	CACNA1S	Q13698	1873 aa		7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	TNKS	O95271	1327 aa		7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	SPATA31A6	Q5VVP1	1343 aa		7.21	□□□□□ -1.26
CLN3-223	ENST00000566472	MYH14	Q7Z406	1995 aa	Known RBP	7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	ECM29	Q5VYK3	1845 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	PRPF3	O43395	683 aa	Known RBP	7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	CBFA2T2	O43439	604 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	KCNQ2	O43526	872 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	WDHD1	O75717	1129 aa	Predicted RBP	7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	PTPRE	P23469	700 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	GTF2E1	P29083	439 aa	Predicted RBP	7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	HIBADH	P31937	336 aa	Known RBP	7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	GYG1	P46976	350 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	KCNJ6	P48051	423 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	AKAP17A	Q02040	695 aa	Known RBP	7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	FAM98C	Q17RN3	349 aa	Known RBP	7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	CCDC178	Q5BJE1	867 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	CT47A1	Q5JQC4	288 aa	Predicted RBP	7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	RRP12	Q5JTH9	1297 aa	Known RBP	7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	TBC1D9B	Q66K14	1250 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	KANK3	Q6NY19	840 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	SHC4	Q6S5L8	630 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	TPTE2	Q6XPS3	522 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	KRBA2	Q6ZNG9	492 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	C15orf52	Q6ZUT6	534 aa	Known RBP	7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	C3orf67	Q6ZVT6	689 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	CATIP	Q7Z7H3	387 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	ADGRA1	Q86SQ6	560 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	NBPF5P	Q86XG9	351 aa	Predicted RBP	7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	IQCA1	Q86XH1	822 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	FAM177A1	Q8N128	213 aa	Predicted RBP	7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	TRIML1	Q8N9V2	468 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	CELF1	Q92879	486 aa	Known RBP	7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	NSUN4	Q96CB9	384 aa	Known RBP	7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	CCDC34	Q96HJ3	373 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	AIFM3	Q96NN9	605 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	SETDB2	Q96T68	719 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	MYL10	Q9BUA6	226 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	OSBPL5	Q9H0X9	879 aa	Predicted RBP	7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	BRMS1	Q9HCU9	246 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	TOMM22	Q9NS69	142 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	ATP8A2	Q9NTI2	1148 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	GJB4	Q9NTQ9	266 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	ABCF2	Q9UG63	623 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	DACH1	Q9UI36	760 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	RTCB	Q9Y3I0	505 aa	Known RBP	7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	KIAA1551	Q9HCM1	1747 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	IRS2	Q9Y4H2	1338 aa		7.2	□□□□□ -1.26
CLN3-223	ENST00000566472	DLEC1	Q9Y238	1755 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	MINDY4B	A8MYZ0	360 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	KIF2A	O00139	706 aa	Predicted RBP	7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	NRDC	O43847	1150 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	PPFIA3	O75145	1194 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	ZPR1	O75312	459 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	ADRA2B	P18089	450 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	MARCKS	P29966	332 aa	Predicted RBP	7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	KRT2	P35908	639 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	MYL5	Q02045	173 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	FUT2	Q10981	343 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	DPCR1	Q3MIW9	517 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	IFIT1B	Q5T764	474 aa	Known RBP	7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	OLFM4	Q6UX06	510 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	LRRC8A	Q8IWT6	810 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	CCDC144CP	Q8IYA2	1237 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	PDCL3	Q9H2J4	239 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	FBXO2	Q9UK22	296 aa	Predicted RBP	7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	KCNH3	Q9ULD8	1083 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	LEMD3	Q9Y2U8	911 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	SRPRB	Q9Y5M8	271 aa	Known RBP	7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	CHD4	Q14839	1912 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	ROBO3	Q96MS0	1386 aa		7.19	□□□□□ -1.26
CLN3-223	ENST00000566472	LAMB1	P07942	1786 aa		7.18	□□□□□ -1.26
CLN3-223	ENST00000566472	MYO5A	Q9Y4I1	1855 aa	Known RBP	7.18	□□□□□ -1.26
CLN3-223	ENST00000566472	TRIM75P	A6NK02	468 aa		7.18	□□□□□ -1.26

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