RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 RAET1EQ8TD07 263 aa22.94■■□□□ 1.26
CLN3-218ENST00000565688 SH3RF3Q8TEJ3 882 aaPredicted RBP22.94■■□□□ 1.26
CLN3-218ENST00000565688 DHX36Q9H2U1 1008 aaKnown RBP22.94■■□□□ 1.26
CLN3-218ENST00000565688 MYPNQ86TC9 1320 aa22.93■■□□□ 1.26
CLN3-218ENST00000565688 CYP2E1P05181 493 aaPredicted RBP22.93■■□□□ 1.26
CLN3-218ENST00000565688 PPP4CP60510 307 aa22.93■■□□□ 1.26
CLN3-218ENST00000565688 SMCR8Q8TEV9 937 aaPredicted RBP22.93■■□□□ 1.26
CLN3-218ENST00000565688 GCC1Q96CN9 775 aa22.93■■□□□ 1.26
CLN3-218ENST00000565688 AATFQ9NY61 560 aaKnown RBP eCLIP22.93■■□□□ 1.26
CLN3-218ENST00000565688 PI4KBQ9UBF8 816 aa22.93■■□□□ 1.26
CLN3-218ENST00000565688 AGTPBP1Q9UPW5 1226 aa22.93■■□□□ 1.26
CLN3-218ENST00000565688 MAST2Q6P0Q8 1798 aa22.93■■□□□ 1.26
CLN3-218ENST00000565688 PHIPQ8WWQ0 1821 aa22.92■■□□□ 1.26
CLN3-218ENST00000565688 FAM196BA6NMK8 535 aa22.92■■□□□ 1.26
CLN3-218ENST00000565688 MYCP01106 439 aaPredicted RBP22.92■■□□□ 1.26
CLN3-218ENST00000565688 PROCA1Q8NCQ7 364 aaPredicted RBP22.92■■□□□ 1.26
CLN3-218ENST00000565688 PTPRFP10586 1907 aa22.91■■□□□ 1.26
CLN3-218ENST00000565688 GRK4P32298 578 aa22.91■■□□□ 1.26
CLN3-218ENST00000565688 CAP2P40123 477 aa22.91■■□□□ 1.26
CLN3-218ENST00000565688 ZNF280CQ8ND82 737 aa22.91■■□□□ 1.26
CLN3-218ENST00000565688 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.91■■□□□ 1.26
CLN3-218ENST00000565688 DBNLQ9UJU6 430 aaKnown RBP22.91■■□□□ 1.26
CLN3-218ENST00000565688 PNMA3Q9UL41 463 aa22.91■■□□□ 1.26
CLN3-218ENST00000565688 ZAP70P43403 619 aa22.9■■□□□ 1.26
CLN3-218ENST00000565688 CEP85Q6P2H3 762 aa22.9■■□□□ 1.26
CLN3-218ENST00000565688 CCDC84Q86UT8 332 aaPredicted RBP22.9■■□□□ 1.26
CLN3-218ENST00000565688 ERC1Q8IUD2 1116 aa22.9■■□□□ 1.26
CLN3-218ENST00000565688 USP17L5A8MUK1 530 aa22.89■■□□□ 1.25
CLN3-218ENST00000565688 MS4A1P11836 297 aa22.89■■□□□ 1.25
CLN3-218ENST00000565688 SPP2Q13103 211 aa22.89■■□□□ 1.25
CLN3-218ENST00000565688 TGFBRAP1Q8WUH2 860 aa22.89■■□□□ 1.25
CLN3-218ENST00000565688 EAF2Q96CJ1 260 aaPredicted RBP22.89■■□□□ 1.25
CLN3-218ENST00000565688 PRKCZQ05513 592 aa22.88■■□□□ 1.25
CLN3-218ENST00000565688 PABPC4Q13310 644 aaKnown RBP eCLIP22.88■■□□□ 1.25
CLN3-218ENST00000565688 ADGRA1Q86SQ6 560 aa22.88■■□□□ 1.25
CLN3-218ENST00000565688 CERS3Q8IU89 383 aa22.88■■□□□ 1.25
CLN3-218ENST00000565688 SLAIN1Q8ND83 568 aa22.88■■□□□ 1.25
CLN3-218ENST00000565688 NKX2-3Q8TAU0 364 aa22.88■■□□□ 1.25
CLN3-218ENST00000565688 CCDC8Q9H0W5 538 aaPredicted RBP22.88■■□□□ 1.25
CLN3-218ENST00000565688 AS3MTQ9HBK9 375 aa22.88■■□□□ 1.25
CLN3-218ENST00000565688 TLR7Q9NYK1 1049 aaKnown RBP22.88■■□□□ 1.25
CLN3-218ENST00000565688 BIN2Q9UBW5 565 aaPredicted RBP22.88■■□□□ 1.25
CLN3-218ENST00000565688 FLT1P17948 1338 aa22.87■■□□□ 1.25
CLN3-218ENST00000565688 UBXN2AP68543 259 aa22.87■■□□□ 1.25
CLN3-218ENST00000565688 TREML2Q5T2D2 321 aa22.87■■□□□ 1.25
CLN3-218ENST00000565688 TMED8Q6PL24 325 aaPredicted RBP22.87■■□□□ 1.25
CLN3-218ENST00000565688 FOXP4Q8IVH2 680 aaPredicted RBP22.87■■□□□ 1.25
CLN3-218ENST00000565688 MAPKAPK5Q8IW41 473 aa22.87■■□□□ 1.25
CLN3-218ENST00000565688 TRIM34Q9BYJ4 488 aa22.87■■□□□ 1.25
CLN3-218ENST00000565688 PIH1D3Q9NQM4 214 aaKnown RBP22.87■■□□□ 1.25
CLN3-218ENST00000565688 MGAMO43451 1857 aa22.86■■□□□ 1.25
CLN3-218ENST00000565688 ASNSP08243 561 aa22.86■■□□□ 1.25
CLN3-218ENST00000565688 RRP1BQ14684 758 aaKnown RBP22.86■■□□□ 1.25
CLN3-218ENST00000565688 MTFR1Q15390 333 aa22.86■■□□□ 1.25
CLN3-218ENST00000565688 HSP90AB4PQ58FF6 505 aa22.86■■□□□ 1.25
CLN3-218ENST00000565688 METTL16Q86W50 562 aaKnown RBP22.86■■□□□ 1.25
CLN3-218ENST00000565688 CRACR2BQ8N4Y2 399 aaPredicted RBP22.86■■□□□ 1.25
CLN3-218ENST00000565688 PANK1Q8TE04 598 aa22.86■■□□□ 1.25
CLN3-218ENST00000565688 GINM1Q9NU53 330 aa22.86■■□□□ 1.25
CLN3-218ENST00000565688 ATAD5Q96QE3 1844 aa22.85■■□□□ 1.25
CLN3-218ENST00000565688 TNPO2O14787 897 aaKnown RBP22.85■■□□□ 1.25
CLN3-218ENST00000565688 IDH1O75874 414 aaKnown RBP22.85■■□□□ 1.25
CLN3-218ENST00000565688 CYP7A1P22680 504 aa22.85■■□□□ 1.25
CLN3-218ENST00000565688 GCLCP48506 637 aaPredicted RBP22.85■■□□□ 1.25
CLN3-218ENST00000565688 HMGCS2P54868 508 aa22.85■■□□□ 1.25
CLN3-218ENST00000565688 FAM110CQ1W6H9 321 aa22.85■■□□□ 1.25
CLN3-218ENST00000565688 SH3D19Q5HYK7 790 aa22.85■■□□□ 1.25
CLN3-218ENST00000565688 ANKRD13CQ8N6S4 541 aa22.85■■□□□ 1.25
CLN3-218ENST00000565688 WDR18Q9BV38 432 aa22.85■■□□□ 1.25
CLN3-218ENST00000565688 LOC285556D6RIA3 1793 aa22.84■■□□□ 1.25
CLN3-218ENST00000565688 HLA-DOAP06340 250 aa22.84■■□□□ 1.25
CLN3-218ENST00000565688 GJB1P08034 283 aa22.84■■□□□ 1.25
CLN3-218ENST00000565688 CCL5P13501 91 aa22.84■■□□□ 1.25
CLN3-218ENST00000565688 PALD1Q9ULE6 856 aa22.84■■□□□ 1.25
CLN3-218ENST00000565688 GABRQQ9UN88 632 aa22.84■■□□□ 1.25
CLN3-218ENST00000565688 EXOC6BQ9Y2D4 811 aa22.84■■□□□ 1.25
CLN3-218ENST00000565688 FOCADQ5VW36 1801 aa22.83■■□□□ 1.25
CLN3-218ENST00000565688 ADCY3O60266 1144 aa22.83■■□□□ 1.25
CLN3-218ENST00000565688 FLT3LGP49771 235 aa22.83■■□□□ 1.25
CLN3-218ENST00000565688 MAP3K12Q12852 859 aa22.83■■□□□ 1.25
CLN3-218ENST00000565688 IRF5Q13568 498 aa22.83■■□□□ 1.25
CLN3-218ENST00000565688 AACSQ86V21 672 aa22.83■■□□□ 1.25
CLN3-218ENST00000565688 PXYLP1Q8TE99 480 aa22.83■■□□□ 1.25
CLN3-218ENST00000565688 COA7Q96BR5 231 aa22.83■■□□□ 1.25
CLN3-218ENST00000565688 GJA8P48165 433 aa22.82■■□□□ 1.24
CLN3-218ENST00000565688 RNF208Q9H0X6 261 aa22.82■■□□□ 1.24
CLN3-218ENST00000565688 ASCC2Q9H1I8 757 aaPredicted RBP22.82■■□□□ 1.24
CLN3-218ENST00000565688 SIPA1L1O43166 1804 aa22.82■■□□□ 1.24
CLN3-218ENST00000565688 CDK5RAP2Q96SN8 1893 aa22.81■■□□□ 1.24
CLN3-218ENST00000565688 BACE1P56817 501 aa22.81■■□□□ 1.24
CLN3-218ENST00000565688 DYNLL1P63167 89 aaKnown RBP22.81■■□□□ 1.24
CLN3-218ENST00000565688 MAGEB6Q8N7X4 407 aa22.81■■□□□ 1.24
CLN3-218ENST00000565688 SHISA4Q96DD7 197 aa22.81■■□□□ 1.24
CLN3-218ENST00000565688 DNAJC18Q9H819 358 aa22.81■■□□□ 1.24
CLN3-218ENST00000565688 TMOD4Q9NZQ9 345 aa22.81■■□□□ 1.24
CLN3-218ENST00000565688 PCDH10Q9P2E7 1040 aa22.81■■□□□ 1.24
CLN3-218ENST00000565688 SAP30BPQ9UHR5 308 aaKnown RBP22.81■■□□□ 1.24
CLN3-218ENST00000565688 MYO5AQ9Y4I1 1855 aaKnown RBP22.81■■□□□ 1.24
CLN3-218ENST00000565688 C19orf81C9J6K1 198 aa22.8■■□□□ 1.24
CLN3-218ENST00000565688 MTMR2Q13614 643 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms