RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 ANKRD2Q9GZV1 360 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 EPN3Q9H201 632 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 FRMD4BQ9Y2L6 1034 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 CPP00450 1065 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 MSL3Q8N5Y2 521 aaKnown RBP6.95□□□□□ -1.3
CLK3-212ENST00000563418 BRF1Q92994 677 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 NUF2Q9BZD4 464 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 FBXW10Q5XX13 1052 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 HVCN1Q96D96 273 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 DDX21Q9NR30 783 aaKnown RBP eCLIP6.95□□□□□ -1.3
CLK3-212ENST00000563418 USP19O94966 1318 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 DCAF8L1A6NGE4 600 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 PACS2Q86VP3 889 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 HYOU1Q9Y4L1 999 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 TRIML1Q8N9V2 468 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 PPP1R14CQ8TAE6 165 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 SGSM3Q96HU1 749 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 TRIM47Q96LD4 638 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 IWS1Q96ST2 819 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 KRT23Q9C075 422 aa6.95□□□□□ -1.3
CLK3-212ENST00000563418 SYNRGQ9UMZ2 1314 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 TMED10P49755 219 aaKnown RBP6.94□□□□□ -1.3
CLK3-212ENST00000563418 CUL4BQ13620 913 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 KCNK9Q9NPC2 374 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 IL1RAPL1Q9NZN1 696 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 FHOD1Q9Y613 1164 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 MAN1A2O60476 641 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 NACAP1Q9BZK3 213 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 PALMDQ9NP74 551 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 ADGRL1O94910 1474 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 FAM186BQ8IYM0 893 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 FAM81AQ8TBF8 368 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.94□□□□□ -1.3
CLK3-212ENST00000563418 SEPT11Q9NVA2 429 aaKnown RBP6.94□□□□□ -1.3
CLK3-212ENST00000563418 C9orf84Q5VXU9 1444 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 E7ENQ6 273 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 HARSP12081 509 aaKnown RBP6.94□□□□□ -1.3
CLK3-212ENST00000563418 NOP14P78316 857 aaKnown RBP6.94□□□□□ -1.3
CLK3-212ENST00000563418 MYSM1Q5VVJ2 828 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 GSDMBQ8TAX9 411 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.94□□□□□ -1.3
CLK3-212ENST00000563418 HOMER2Q9NSB8 354 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 NDUFA13Q9P0J0 144 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 ST5P78524 1137 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 CUL1Q13616 776 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 VWA3BQ502W6 1294 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 SYCE1Q8N0S2 351 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 RUNDC3BQ96NL0 473 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 TM6SF1Q9BZW5 370 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 SYNCQ9H7C4 482 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 L2HGDHQ9H9P8 463 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 KIAA1468Q9P260 1216 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 EXOC6BQ9Y2D4 811 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 VCAM1P19320 739 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 PLEKHA4Q9H4M7 779 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 CFAP74Q9C0B2 1584 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 MYLK4Q86YV6 388 aaPredicted RBP6.94□□□□□ -1.3
CLK3-212ENST00000563418 RAB34Q9BZG1 259 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 AATFQ9NY61 560 aaKnown RBP eCLIP6.94□□□□□ -1.3
CLK3-212ENST00000563418 CLASP1Q7Z460 1538 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 FAM135AQ9P2D6 1515 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 GOLGA8BA8MQT2 603 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 ATP6V0A1Q93050 837 aa6.94□□□□□ -1.3
CLK3-212ENST00000563418 BIVM-ERCC5R4GMW8 1640 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 KRT18P05783 430 aaKnown RBP6.93□□□□□ -1.3
CLK3-212ENST00000563418 GJA8P48165 433 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 ITIH3Q06033 890 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 PANX2Q96RD6 677 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.93□□□□□ -1.3
CLK3-212ENST00000563418 C6orf118Q5T5N4 469 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 OPTNQ96CV9 577 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 SMIM23A6NLE4 172 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 ESRRBO95718 433 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 TEFQ10587 303 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 ANKRD20A3Q5VUR7 823 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 FAM192AQ9GZU8 254 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 VCPKMTQ9H867 229 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 ECHDC1Q9NTX5 307 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 ZRANB1Q9UGI0 708 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 NUB1Q9Y5A7 615 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 KDM5AP29375 1690 aaKnown RBP6.93□□□□□ -1.3
CLK3-212ENST00000563418 BLVRAP53004 296 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 ACTN3Q08043 901 aaPredicted RBP6.93□□□□□ -1.3
CLK3-212ENST00000563418 MTX1Q13505 466 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 CUL4AQ13619 759 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 CCDC93Q567U6 631 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 SPATA21Q7Z572 469 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 ZC3H18Q86VM9 953 aaKnown RBP6.93□□□□□ -1.3
CLK3-212ENST00000563418 NLRP14Q86W24 1093 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 UNC45AQ9H3U1 944 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 STRN4Q9NRL3 753 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 ZFATQ9P243 1243 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 EIF2S2P20042 333 aaKnown RBP6.93□□□□□ -1.3
CLK3-212ENST00000563418 CHMLP26374 656 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 STX2P32856 288 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 AMPHP49418 695 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 PDE6CP51160 858 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 COG1Q8WTW3 980 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 FGFR1OP2Q9NVK5 253 aa6.93□□□□□ -1.3
CLK3-212ENST00000563418 NUTM2BA6NNL0 878 aaPredicted RBP6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms