RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 SPAG9O60271 1321 aaKnown RBP6.48□□□□□ -1.37
VPS35P1-201ENST00000563400 SENP3-EIF4A1A0A087X0R7 540 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 DYTNA2CJ06 578 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 GREM1O60565 184 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 F2P00734 622 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 PCSK2P16519 638 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 COPB2P35606 906 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 RASSF7Q02833 373 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 MTMR1Q13613 665 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 KCTD2Q14681 263 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 CCDC85BQ15834 202 aaPredicted RBP6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 C11orf91Q3C1V1 193 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 AKAP4Q5JQC9 854 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 PERM1Q5SV97 790 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 ICE2Q659A1 982 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 STRA8Q7Z7C7 330 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 SYNPOQ8N3V7 929 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 ZSCAN1Q8NBB4 408 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 ENOX1Q8TC92 643 aaKnown RBP6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 HOOK2Q96ED9 719 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 IFT43Q96FT9 208 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 GAS2L1Q99501 681 aaPredicted RBP6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 ZMYM5Q9UJ78 669 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 TLR6Q9Y2C9 796 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 PPP2R3BQ9Y5P8 575 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 MYOM3Q5VTT5 1437 aa6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 SUPT6HQ7KZ85 1726 aaKnown RBP6.47□□□□□ -1.37
VPS35P1-201ENST00000563400 DIP2BQ9P265 1576 aa6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 SLC26A4O43511 780 aa6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 TIMM44O43615 452 aa6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 TNFRSF21O75509 655 aa6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 POLR3DP05423 398 aaPredicted RBP6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 MYL3P08590 195 aa6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 IFIT2P09913 472 aaKnown RBP6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 SOX5P35711 763 aa6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 SSRP1Q08945 709 aaKnown RBP6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 PIN1Q13526 163 aaPredicted RBP6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 PWP1Q13610 501 aa6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 LCE2CQ5TA81 110 aa6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 LHFPL2Q6ZUX7 228 aa6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 TRIM22Q8IYM9 498 aa6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 AFAP1L2Q8N4X5 818 aa6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 NKD1Q969G9 470 aa6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 TIFAQ96CG3 184 aa6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 RHOVQ96L33 236 aa6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 SLC4A9Q96Q91 983 aa6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 KCNQ5Q9NR82 932 aa6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 AASDHPPTQ9NRN7 309 aa6.46□□□□□ -1.37
VPS35P1-201ENST00000563400 ZNF518AQ6AHZ1 1483 aa6.46□□□□□ -1.38
VPS35P1-201ENST00000563400 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.46□□□□□ -1.38
VPS35P1-201ENST00000563400 PCF11O94913 1555 aaKnown RBP6.46□□□□□ -1.38
VPS35P1-201ENST00000563400 TIAM1Q13009 1591 aa6.46□□□□□ -1.38
VPS35P1-201ENST00000563400 SCAPERQ9BY12 1400 aa6.46□□□□□ -1.38
VPS35P1-201ENST00000563400 ABCA9Q8IUA7 1624 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 A0A1B0GTH6 734 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 B2RBV5 119 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 F11P03951 625 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 SRGNP10124 158 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 EIF6P56537 245 aaKnown RBP6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 POU5F1Q01860 360 aaKnown RBP6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 PABPC4Q13310 644 aaKnown RBP eCLIP6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 GRIN2CQ14957 1233 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 L1TD1Q5T7N2 865 aaKnown RBP6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 FAM102BQ5T8I3 360 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 KANK3Q6NY19 840 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 DGKHQ86XP1 1220 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 TCEAL8Q8IYN2 117 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 RHBDD1Q8TEB9 315 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 MTMR8Q96EF0 704 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 TRERF1Q96PN7 1200 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 SRCIN1Q9C0H9 1055 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 LUZP4Q9P127 313 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 HCN4Q9Y3Q4 1203 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 SUPT16HQ9Y5B9 1047 aaKnown RBP6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 HRH3Q9Y5N1 445 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 ADGRL1O94910 1474 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 CDK13Q14004 1512 aaKnown RBP6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 PF4P02776 101 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 FAM153BP0C7A2 387 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 SERPINB3P29508 390 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 GIPRP48546 466 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 PSMA6P60900 246 aaKnown RBP6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 ITKQ08881 620 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 FBXW10Q5XX13 1052 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 CCDC174Q6PII3 467 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 TREML1Q86YW5 311 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 GOLM1Q8NBJ4 401 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 TTC16Q8NEE8 873 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 NGDNQ8NEJ9 315 aaKnown RBP6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 YIPF4Q9BSR8 244 aa6.45□□□□□ -1.38
VPS35P1-201ENST00000563400 ANKRD30AQ9BXX3 1397 aa6.44□□□□□ -1.38
VPS35P1-201ENST00000563400 ITSN2Q9NZM3 1697 aa6.44□□□□□ -1.38
VPS35P1-201ENST00000563400 NCOA2Q15596 1464 aa6.44□□□□□ -1.38
VPS35P1-201ENST00000563400 GSG1L2A8MUP6 293 aa6.44□□□□□ -1.38
VPS35P1-201ENST00000563400 GADD45BO75293 160 aaPredicted RBP6.44□□□□□ -1.38
VPS35P1-201ENST00000563400 FBXO24O75426 580 aa6.44□□□□□ -1.38
VPS35P1-201ENST00000563400 TCEA3O75764 348 aa6.44□□□□□ -1.38
VPS35P1-201ENST00000563400 EYA4O95677 639 aa6.44□□□□□ -1.38
VPS35P1-201ENST00000563400 SMTNP53814 917 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms