RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 MGAMO43451 1857 aa19.33■□□□□ 0.68
CLK3-211ENST00000563297 MYPNQ86TC9 1320 aa19.32■□□□□ 0.68
CLK3-211ENST00000563297 CAP2P40123 477 aa19.32■□□□□ 0.68
CLK3-211ENST00000563297 FCGRTP55899 365 aa19.32■□□□□ 0.68
CLK3-211ENST00000563297 PPP4CP60510 307 aa19.32■□□□□ 0.68
CLK3-211ENST00000563297 NAA16Q6N069 864 aaPredicted RBP19.32■□□□□ 0.68
CLK3-211ENST00000563297 ITPRIPQ8IWB1 547 aa19.32■□□□□ 0.68
CLK3-211ENST00000563297 COL2A1P02458 1487 aaPredicted RBP19.32■□□□□ 0.68
CLK3-211ENST00000563297 MYO5AQ9Y4I1 1855 aaKnown RBP19.32■□□□□ 0.68
CLK3-211ENST00000563297 DOCK3Q8IZD9 2030 aa19.32■□□□□ 0.68
CLK3-211ENST00000563297 BAG3O95817 575 aa19.31■□□□□ 0.68
CLK3-211ENST00000563297 SPP2Q13103 211 aa19.31■□□□□ 0.68
CLK3-211ENST00000563297 GCC1Q96CN9 775 aa19.31■□□□□ 0.68
CLK3-211ENST00000563297 NOL10Q9BSC4 688 aaKnown RBP19.31■□□□□ 0.68
CLK3-211ENST00000563297 AATFQ9NY61 560 aaKnown RBP eCLIP19.31■□□□□ 0.68
CLK3-211ENST00000563297 GABRQQ9UN88 632 aa19.31■□□□□ 0.68
CLK3-211ENST00000563297 AGTPBP1Q9UPW5 1226 aa19.31■□□□□ 0.68
CLK3-211ENST00000563297 ZAP70P43403 619 aa19.3■□□□□ 0.68
CLK3-211ENST00000563297 PRKCZQ05513 592 aa19.3■□□□□ 0.68
CLK3-211ENST00000563297 TREML2Q5T2D2 321 aa19.3■□□□□ 0.68
CLK3-211ENST00000563297 ADGRA1Q86SQ6 560 aa19.3■□□□□ 0.68
CLK3-211ENST00000563297 ZNF280CQ8ND82 737 aa19.3■□□□□ 0.68
CLK3-211ENST00000563297 CCDC8Q9H0W5 538 aaPredicted RBP19.3■□□□□ 0.68
CLK3-211ENST00000563297 PI4KBQ9UBF8 816 aa19.3■□□□□ 0.68
CLK3-211ENST00000563297 HERC5Q9UII4 1024 aaKnown RBP19.3■□□□□ 0.68
CLK3-211ENST00000563297 DBNLQ9UJU6 430 aaKnown RBP19.3■□□□□ 0.68
CLK3-211ENST00000563297 PLCG2P16885 1265 aa19.29■□□□□ 0.68
CLK3-211ENST00000563297 DIEXFQ68CQ4 756 aaKnown RBP19.29■□□□□ 0.68
CLK3-211ENST00000563297 PROCA1Q8NCQ7 364 aaPredicted RBP19.29■□□□□ 0.68
CLK3-211ENST00000563297 SMCR8Q8TEV9 937 aaPredicted RBP19.29■□□□□ 0.68
CLK3-211ENST00000563297 TGFBRAP1Q8WUH2 860 aa19.29■□□□□ 0.68
CLK3-211ENST00000563297 EAF2Q96CJ1 260 aaPredicted RBP19.29■□□□□ 0.68
CLK3-211ENST00000563297 DHX36Q9H2U1 1008 aaKnown RBP19.29■□□□□ 0.68
CLK3-211ENST00000563297 PIH1D3Q9NQM4 214 aaKnown RBP19.29■□□□□ 0.68
CLK3-211ENST00000563297 USP17L5A8MUK1 530 aa19.28■□□□□ 0.68
CLK3-211ENST00000563297 IGSF3O75054 1194 aa19.28■□□□□ 0.68
CLK3-211ENST00000563297 MAPKAPK5Q8IW41 473 aa19.28■□□□□ 0.68
CLK3-211ENST00000563297 TBC1D2Q9BYX2 928 aa19.28■□□□□ 0.68
CLK3-211ENST00000563297 TLR7Q9NYK1 1049 aaKnown RBP19.28■□□□□ 0.68
CLK3-211ENST00000563297 BIN2Q9UBW5 565 aaPredicted RBP19.28■□□□□ 0.68
CLK3-211ENST00000563297 CCL5P13501 91 aa19.27■□□□□ 0.68
CLK3-211ENST00000563297 FLT3LGP49771 235 aa19.27■□□□□ 0.68
CLK3-211ENST00000563297 CEP85Q6P2H3 762 aa19.27■□□□□ 0.68
CLK3-211ENST00000563297 METTL16Q86W50 562 aaKnown RBP19.27■□□□□ 0.68
CLK3-211ENST00000563297 FOXP4Q8IVH2 680 aaPredicted RBP19.27■□□□□ 0.68
CLK3-211ENST00000563297 ANKRD13CQ8N6S4 541 aa19.27■□□□□ 0.68
CLK3-211ENST00000563297 SHISA4Q96DD7 197 aa19.27■□□□□ 0.68
CLK3-211ENST00000563297 ATAD5Q96QE3 1844 aa19.27■□□□□ 0.68
CLK3-211ENST00000563297 CDK5RAP2Q96SN8 1893 aa19.26■□□□□ 0.67
CLK3-211ENST00000563297 GJB1P08034 283 aa19.26■□□□□ 0.67
CLK3-211ENST00000563297 HMGCS2P54868 508 aa19.26■□□□□ 0.67
CLK3-211ENST00000563297 UBXN2AP68543 259 aa19.26■□□□□ 0.67
CLK3-211ENST00000563297 SH3D19Q5HYK7 790 aa19.26■□□□□ 0.67
CLK3-211ENST00000563297 HABP4Q5JVS0 413 aaKnown RBP19.26■□□□□ 0.67
CLK3-211ENST00000563297 SLAIN1Q8ND83 568 aa19.26■□□□□ 0.67
CLK3-211ENST00000563297 RNF208Q9H0X6 261 aa19.26■□□□□ 0.67
CLK3-211ENST00000563297 PCDH10Q9P2E7 1040 aa19.26■□□□□ 0.67
CLK3-211ENST00000563297 PNMA3Q9UL41 463 aa19.26■□□□□ 0.67
CLK3-211ENST00000563297 PALD1Q9ULE6 856 aa19.26■□□□□ 0.67
CLK3-211ENST00000563297 CEP290O15078 2479 aa19.26■□□□□ 0.67
CLK3-211ENST00000563297 SIPA1L1O43166 1804 aa19.25■□□□□ 0.67
CLK3-211ENST00000563297 TNPO2O14787 897 aaKnown RBP19.25■□□□□ 0.67
CLK3-211ENST00000563297 ADCY3O60266 1144 aa19.25■□□□□ 0.67
CLK3-211ENST00000563297 CYP7A1P22680 504 aa19.25■□□□□ 0.67
CLK3-211ENST00000563297 GJA8P48165 433 aa19.25■□□□□ 0.67
CLK3-211ENST00000563297 DYNLL1P63167 89 aaKnown RBP19.25■□□□□ 0.67
CLK3-211ENST00000563297 JAG1P78504 1218 aa19.25■□□□□ 0.67
CLK3-211ENST00000563297 NKX2-3Q8TAU0 364 aa19.25■□□□□ 0.67
CLK3-211ENST00000563297 PANK1Q8TE04 598 aa19.25■□□□□ 0.67
CLK3-211ENST00000563297 WDR18Q9BV38 432 aa19.25■□□□□ 0.67
CLK3-211ENST00000563297 DNAJC18Q9H819 358 aa19.25■□□□□ 0.67
CLK3-211ENST00000563297 AS3MTQ9HBK9 375 aa19.25■□□□□ 0.67
CLK3-211ENST00000563297 FLT1P17948 1338 aa19.25■□□□□ 0.67
CLK3-211ENST00000563297 IRF5Q13568 498 aa19.24■□□□□ 0.67
CLK3-211ENST00000563297 FAM110CQ1W6H9 321 aa19.24■□□□□ 0.67
CLK3-211ENST00000563297 PXYLP1Q8TE99 480 aa19.24■□□□□ 0.67
CLK3-211ENST00000563297 ZBED9Q6R2W3 1325 aa19.24■□□□□ 0.67
CLK3-211ENST00000563297 FOCADQ5VW36 1801 aa19.23■□□□□ 0.67
CLK3-211ENST00000563297 ASNSP08243 561 aa19.23■□□□□ 0.67
CLK3-211ENST00000563297 ELNP15502 786 aa19.23■□□□□ 0.67
CLK3-211ENST00000563297 GCLCP48506 637 aaPredicted RBP19.23■□□□□ 0.67
CLK3-211ENST00000563297 PABPC4Q13310 644 aaKnown RBP eCLIP19.23■□□□□ 0.67
CLK3-211ENST00000563297 UNC93B1Q9H1C4 597 aa19.23■□□□□ 0.67
CLK3-211ENST00000563297 ASCC2Q9H1I8 757 aaPredicted RBP19.23■□□□□ 0.67
CLK3-211ENST00000563297 EXOC6BQ9Y2D4 811 aa19.23■□□□□ 0.67
CLK3-211ENST00000563297 NDUFB9Q9Y6M9 179 aa19.23■□□□□ 0.67
CLK3-211ENST00000563297 MAST2Q6P0Q8 1798 aa19.23■□□□□ 0.67
CLK3-211ENST00000563297 LOC285556D6RIA3 1793 aa19.22■□□□□ 0.67
CLK3-211ENST00000563297 IDH1O75874 414 aaKnown RBP19.22■□□□□ 0.67
CLK3-211ENST00000563297 BACE1P56817 501 aa19.22■□□□□ 0.67
CLK3-211ENST00000563297 SHROOM1Q2M3G4 852 aaPredicted RBP19.22■□□□□ 0.67
CLK3-211ENST00000563297 UBE2Q1Q7Z7E8 422 aa19.22■□□□□ 0.67
CLK3-211ENST00000563297 CRACR2BQ8N4Y2 399 aaPredicted RBP19.22■□□□□ 0.67
CLK3-211ENST00000563297 COA7Q96BR5 231 aa19.22■□□□□ 0.67
CLK3-211ENST00000563297 ANTXR1Q9H6X2 564 aa19.22■□□□□ 0.67
CLK3-211ENST00000563297 SAP30BPQ9UHR5 308 aaKnown RBP19.22■□□□□ 0.67
CLK3-211ENST00000563297 AACSQ86V21 672 aa19.21■□□□□ 0.67
CLK3-211ENST00000563297 ERC1Q8IUD2 1116 aa19.21■□□□□ 0.67
CLK3-211ENST00000563297 MAGEB6Q8N7X4 407 aa19.21■□□□□ 0.67
CLK3-211ENST00000563297 MIGA1Q8NAN2 632 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms