RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 TMTC2Q8N394 836 aa22.22■■□□□ 1.15
SMPD3-203ENST00000563226 CCDC82Q8N4S0 544 aa22.22■■□□□ 1.15
SMPD3-203ENST00000563226 LINC00301Q8NCQ3 95 aa22.22■■□□□ 1.15
SMPD3-203ENST00000563226 POLLQ9UGP5 575 aa22.22■■□□□ 1.15
SMPD3-203ENST00000563226 BBOX1O75936 387 aa22.22■■□□□ 1.15
SMPD3-203ENST00000563226 APBA3O96018 575 aa22.22■■□□□ 1.15
SMPD3-203ENST00000563226 ME1P48163 572 aa22.22■■□□□ 1.15
SMPD3-203ENST00000563226 RBM43Q6ZSC3 357 aaKnown RBP22.22■■□□□ 1.15
SMPD3-203ENST00000563226 PCDHA7Q9UN72 937 aa22.22■■□□□ 1.15
SMPD3-203ENST00000563226 MYH6P13533 1939 aa22.22■■□□□ 1.15
SMPD3-203ENST00000563226 NRXN2Q9P2S2 1712 aa22.21■■□□□ 1.15
SMPD3-203ENST00000563226 KLHL34Q8N239 644 aa22.21■■□□□ 1.15
SMPD3-203ENST00000563226 FANCBQ8NB91 859 aa22.21■■□□□ 1.15
SMPD3-203ENST00000563226 RGS22Q8NE09 1264 aa22.21■■□□□ 1.15
SMPD3-203ENST00000563226 SH3RF3Q8TEJ3 882 aaPredicted RBP22.21■■□□□ 1.15
SMPD3-203ENST00000563226 CRAMP1Q96RY5 1269 aa22.21■■□□□ 1.15
SMPD3-203ENST00000563226 USP17L8P0C7I0 530 aa22.21■■□□□ 1.15
SMPD3-203ENST00000563226 CCDC192P0DO97 292 aa22.21■■□□□ 1.15
SMPD3-203ENST00000563226 TBC1D16Q8TBP0 767 aa22.21■■□□□ 1.15
SMPD3-203ENST00000563226 POLR3EQ9NVU0 708 aa22.21■■□□□ 1.15
SMPD3-203ENST00000563226 PLSCR1O15162 318 aa22.2■■□□□ 1.14
SMPD3-203ENST00000563226 TYRO3Q06418 890 aa22.2■■□□□ 1.14
SMPD3-203ENST00000563226 ZNF772Q68DY9 489 aaPredicted RBP22.2■■□□□ 1.14
SMPD3-203ENST00000563226 TMED8Q6PL24 325 aaPredicted RBP22.2■■□□□ 1.14
SMPD3-203ENST00000563226 PODXL2Q9NZ53 605 aa22.2■■□□□ 1.14
SMPD3-203ENST00000563226 ARPP21Q9UBL0 812 aaPredicted RBP22.2■■□□□ 1.14
SMPD3-203ENST00000563226 MRVI1Q9Y6F6 885 aa22.2■■□□□ 1.14
SMPD3-203ENST00000563226 CDK5RAP2Q96SN8 1893 aa22.2■■□□□ 1.14
SMPD3-203ENST00000563226 NAV1Q8NEY1 1877 aa22.2■■□□□ 1.14
SMPD3-203ENST00000563226 NMT2O60551 498 aa22.19■■□□□ 1.14
SMPD3-203ENST00000563226 PCP11498 1178 aaKnown RBP22.19■■□□□ 1.14
SMPD3-203ENST00000563226 RCAN1P53805 252 aa22.19■■□□□ 1.14
SMPD3-203ENST00000563226 SNW1Q13573 536 aaKnown RBP22.19■■□□□ 1.14
SMPD3-203ENST00000563226 STK38Q15208 465 aa22.19■■□□□ 1.14
SMPD3-203ENST00000563226 SBK1Q52WX2 424 aa22.19■■□□□ 1.14
SMPD3-203ENST00000563226 FAM47AQ5JRC9 791 aa22.19■■□□□ 1.14
SMPD3-203ENST00000563226 CRACR2BQ8N4Y2 399 aaPredicted RBP22.19■■□□□ 1.14
SMPD3-203ENST00000563226 MCM9Q9NXL9 1143 aa22.19■■□□□ 1.14
SMPD3-203ENST00000563226 MKRN1Q9UHC7 482 aaKnown RBP22.19■■□□□ 1.14
SMPD3-203ENST00000563226 ORC4O43929 436 aa22.19■■□□□ 1.14
SMPD3-203ENST00000563226 YEATS4O95619 227 aa22.19■■□□□ 1.14
SMPD3-203ENST00000563226 IL1R1P14778 569 aa22.19■■□□□ 1.14
SMPD3-203ENST00000563226 UVSSAQ2YD98 709 aa22.19■■□□□ 1.14
SMPD3-203ENST00000563226 IFIT1BQ5T764 474 aaKnown RBP22.19■■□□□ 1.14
SMPD3-203ENST00000563226 FSIP1Q8NA03 581 aa22.19■■□□□ 1.14
SMPD3-203ENST00000563226 ESPNB1AK53 854 aa22.18■■□□□ 1.14
SMPD3-203ENST00000563226 ANO1Q5XXA6 986 aa22.18■■□□□ 1.14
SMPD3-203ENST00000563226 ENGASEQ8NFI3 743 aa22.18■■□□□ 1.14
SMPD3-203ENST00000563226 USP25Q9UHP3 1055 aa22.18■■□□□ 1.14
SMPD3-203ENST00000563226 COL11A2P13942 1736 aaPredicted RBP22.18■■□□□ 1.14
SMPD3-203ENST00000563226 PPEF1O14829 653 aaPredicted RBP22.18■■□□□ 1.14
SMPD3-203ENST00000563226 TRIM29Q14134 588 aa22.18■■□□□ 1.14
SMPD3-203ENST00000563226 IQCA1Q86XH1 822 aa22.18■■□□□ 1.14
SMPD3-203ENST00000563226 C6orf229H3BNL8 230 aa22.17■■□□□ 1.14
SMPD3-203ENST00000563226 SPTLC2O15270 562 aa22.17■■□□□ 1.14
SMPD3-203ENST00000563226 OLFM4Q6UX06 510 aa22.17■■□□□ 1.14
SMPD3-203ENST00000563226 CCDC73Q6ZRK6 1079 aa22.17■■□□□ 1.14
SMPD3-203ENST00000563226 TRIM22Q8IYM9 498 aa22.17■■□□□ 1.14
SMPD3-203ENST00000563226 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.17■■□□□ 1.14
SMPD3-203ENST00000563226 RTFDC1Q9BY42 306 aaPredicted RBP22.17■■□□□ 1.14
SMPD3-203ENST00000563226 KCNJ14Q9UNX9 436 aa22.17■■□□□ 1.14
SMPD3-203ENST00000563226 MROH7-TTC4A0A0A0MT08 1334 aa22.17■■□□□ 1.14
SMPD3-203ENST00000563226 CCDC196A0A1B0GTZ2 297 aa22.16■■□□□ 1.14
SMPD3-203ENST00000563226 U2AF2P26368 475 aaKnown RBP eCLIP22.16■■□□□ 1.14
SMPD3-203ENST00000563226 USP5P45974 858 aa22.16■■□□□ 1.14
SMPD3-203ENST00000563226 GSTO1P78417 241 aa22.16■■□□□ 1.14
SMPD3-203ENST00000563226 ADALQ6DHV7 355 aa22.16■■□□□ 1.14
SMPD3-203ENST00000563226 KCNG4Q8TDN1 519 aa22.16■■□□□ 1.14
SMPD3-203ENST00000563226 FAM160A1Q05DH4 1040 aa22.16■■□□□ 1.14
SMPD3-203ENST00000563226 GNL2Q13823 731 aaKnown RBP22.16■■□□□ 1.14
SMPD3-203ENST00000563226 SF3A1Q15459 793 aaKnown RBP22.16■■□□□ 1.14
SMPD3-203ENST00000563226 NLGN1Q8N2Q7 840 aa22.16■■□□□ 1.14
SMPD3-203ENST00000563226 WASF1Q92558 559 aa22.16■■□□□ 1.14
SMPD3-203ENST00000563226 A0A1B0GVL5 298 aa22.15■■□□□ 1.14
SMPD3-203ENST00000563226 PPP4CP60510 307 aa22.15■■□□□ 1.14
SMPD3-203ENST00000563226 TROAPQ12815 778 aa22.15■■□□□ 1.14
SMPD3-203ENST00000563226 C12orf60Q5U649 245 aa22.15■■□□□ 1.14
SMPD3-203ENST00000563226 CATIPQ7Z7H3 387 aa22.15■■□□□ 1.14
SMPD3-203ENST00000563226 MRPS27Q92552 414 aaKnown RBP22.15■■□□□ 1.14
SMPD3-203ENST00000563226 DYNLL2Q96FJ2 89 aa22.15■■□□□ 1.14
SMPD3-203ENST00000563226 TNS1Q9HBL0 1735 aaKnown RBP22.15■■□□□ 1.14
SMPD3-203ENST00000563226 PLEKHA8P1O95397 391 aa22.15■■□□□ 1.14
SMPD3-203ENST00000563226 DEXIO95424 95 aa22.15■■□□□ 1.14
SMPD3-203ENST00000563226 MMP1P03956 469 aa22.15■■□□□ 1.14
SMPD3-203ENST00000563226 SP8Q8IXZ3 490 aa22.15■■□□□ 1.14
SMPD3-203ENST00000563226 TGFBRAP1Q8WUH2 860 aa22.15■■□□□ 1.14
SMPD3-203ENST00000563226 SHISA4Q96DD7 197 aa22.15■■□□□ 1.14
SMPD3-203ENST00000563226 A0A1W2PQ27 194 aa22.14■■□□□ 1.13
SMPD3-203ENST00000563226 A0A1W2PQ64 194 aa22.14■■□□□ 1.13
SMPD3-203ENST00000563226 A0A1W2PQD8 194 aa22.14■■□□□ 1.13
SMPD3-203ENST00000563226 SLC3A2P08195 630 aaKnown RBP22.14■■□□□ 1.13
SMPD3-203ENST00000563226 SRGNP10124 158 aa22.14■■□□□ 1.13
SMPD3-203ENST00000563226 FUT2Q10981 343 aa22.14■■□□□ 1.13
SMPD3-203ENST00000563226 ANO6Q4KMQ2 910 aa22.14■■□□□ 1.13
SMPD3-203ENST00000563226 FMR1NBQ8N0W7 255 aaPredicted RBP22.14■■□□□ 1.13
SMPD3-203ENST00000563226 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.13■■□□□ 1.13
SMPD3-203ENST00000563226 BTBD18B2RXH4 712 aa22.13■■□□□ 1.13
SMPD3-203ENST00000563226 AP5Z1O43299 807 aa22.13■■□□□ 1.13
SMPD3-203ENST00000563226 IGSF3O75054 1194 aa22.13■■□□□ 1.13
SMPD3-203ENST00000563226 BAG3O95817 575 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms