RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 KCNH4Q9UQ05 1017 aa19.03■□□□□ 0.64
VPS39-203ENST00000561797 PCDHB15Q9Y5E8 787 aa19.03■□□□□ 0.64
VPS39-203ENST00000561797 ZHX2Q9Y6X8 837 aa19.03■□□□□ 0.64
VPS39-203ENST00000561797 ATP5JP18859 108 aa19.02■□□□□ 0.64
VPS39-203ENST00000561797 USP5P45974 858 aa19.02■□□□□ 0.64
VPS39-203ENST00000561797 SLC4A8Q2Y0W8 1093 aa19.02■□□□□ 0.64
VPS39-203ENST00000561797 SLC9C2Q5TAH2 1124 aa19.02■□□□□ 0.64
VPS39-203ENST00000561797 CCDC84Q86UT8 332 aaPredicted RBP19.02■□□□□ 0.64
VPS39-203ENST00000561797 DHX36Q9H2U1 1008 aaKnown RBP19.02■□□□□ 0.64
VPS39-203ENST00000561797 PAG1Q9NWQ8 432 aa19.02■□□□□ 0.64
VPS39-203ENST00000561797 PI4KBQ9UBF8 816 aa19.02■□□□□ 0.64
VPS39-203ENST00000561797 PALD1Q9ULE6 856 aa19.02■□□□□ 0.64
VPS39-203ENST00000561797 PDE6AP16499 860 aa19.01■□□□□ 0.63
VPS39-203ENST00000561797 SP3Q02447 781 aa19.01■□□□□ 0.63
VPS39-203ENST00000561797 CD99L2Q8TCZ2 262 aa19.01■□□□□ 0.63
VPS39-203ENST00000561797 ERO1AQ96HE7 468 aa19.01■□□□□ 0.63
VPS39-203ENST00000561797 MYH8P13535 1937 aa19.01■□□□□ 0.63
VPS39-203ENST00000561797 BAZ2AQ9UIF9 1905 aaKnown RBP19.01■□□□□ 0.63
VPS39-203ENST00000561797 MAGEB6P1A0A0J9YX57 407 aa19■□□□□ 0.63
VPS39-203ENST00000561797 CXCL11O14625 94 aa19■□□□□ 0.63
VPS39-203ENST00000561797 RRP1BQ14684 758 aaKnown RBP19■□□□□ 0.63
VPS39-203ENST00000561797 PKN2Q16513 984 aaKnown RBP19■□□□□ 0.63
VPS39-203ENST00000561797 CRACR2BQ8N4Y2 399 aaPredicted RBP19■□□□□ 0.63
VPS39-203ENST00000561797 HERC5Q9UII4 1024 aaKnown RBP19■□□□□ 0.63
VPS39-203ENST00000561797 AFG3L2Q9Y4W6 797 aa19■□□□□ 0.63
VPS39-203ENST00000561797 TRIM17Q9Y577 477 aa19■□□□□ 0.63
VPS39-203ENST00000561797 ZNF532Q9HCE3 1301 aa19■□□□□ 0.63
VPS39-203ENST00000561797 MGAMO43451 1857 aa18.99■□□□□ 0.63
VPS39-203ENST00000561797 TRIM75PA6NK02 468 aa18.99■□□□□ 0.63
VPS39-203ENST00000561797 PDHXO00330 501 aa18.99■□□□□ 0.63
VPS39-203ENST00000561797 CAP2P40123 477 aa18.99■□□□□ 0.63
VPS39-203ENST00000561797 MOGSQ13724 837 aa18.99■□□□□ 0.63
VPS39-203ENST00000561797 TMED8Q6PL24 325 aaPredicted RBP18.99■□□□□ 0.63
VPS39-203ENST00000561797 GADL1Q6ZQY3 521 aa18.99■□□□□ 0.63
VPS39-203ENST00000561797 ANKRD23Q86SG2 305 aa18.99■□□□□ 0.63
VPS39-203ENST00000561797 CERS3Q8IU89 383 aa18.99■□□□□ 0.63
VPS39-203ENST00000561797 HAUS7Q99871 368 aa18.99■□□□□ 0.63
VPS39-203ENST00000561797 TRIM34Q9BYJ4 488 aa18.99■□□□□ 0.63
VPS39-203ENST00000561797 ZCCHC17Q9NP64 241 aaKnown RBP18.99■□□□□ 0.63
VPS39-203ENST00000561797 DDX60LQ5H9U9 1706 aaKnown RBP18.98■□□□□ 0.63
VPS39-203ENST00000561797 HLA-DOAP06340 250 aa18.98■□□□□ 0.63
VPS39-203ENST00000561797 FBXO46Q6PJ61 603 aaPredicted RBP18.98■□□□□ 0.63
VPS39-203ENST00000561797 FOXP4Q8IVH2 680 aaPredicted RBP18.98■□□□□ 0.63
VPS39-203ENST00000561797 RIOK1Q9BRS2 568 aaKnown RBP18.98■□□□□ 0.63
VPS39-203ENST00000561797 HPS5Q9UPZ3 1129 aa18.98■□□□□ 0.63
VPS39-203ENST00000561797 LOC285556D6RIA3 1793 aa18.97■□□□□ 0.63
VPS39-203ENST00000561797 TLR2O60603 784 aa18.97■□□□□ 0.63
VPS39-203ENST00000561797 SLFNL1Q499Z3 407 aa18.97■□□□□ 0.63
VPS39-203ENST00000561797 OTOP1Q7RTM1 612 aa18.97■□□□□ 0.63
VPS39-203ENST00000561797 DNAJC18Q9H819 358 aa18.97■□□□□ 0.63
VPS39-203ENST00000561797 ECHDC1Q9NTX5 307 aa18.97■□□□□ 0.63
VPS39-203ENST00000561797 A0A0G2JLL6 359 aaPredicted RBP18.96■□□□□ 0.63
VPS39-203ENST00000561797 TCRBV5S4A2TA0A5A2 114 aa18.96■□□□□ 0.63
VPS39-203ENST00000561797 ECM2O94769 699 aaPredicted RBP18.96■□□□□ 0.63
VPS39-203ENST00000561797 CAP1Q01518 475 aa18.96■□□□□ 0.63
VPS39-203ENST00000561797 GPAT2Q6NUI2 795 aa18.96■□□□□ 0.63
VPS39-203ENST00000561797 FASTKD5Q7L8L6 764 aaKnown RBP18.96■□□□□ 0.63
VPS39-203ENST00000561797 PRRT2Q7Z6L0 340 aaPredicted RBP18.96■□□□□ 0.63
VPS39-203ENST00000561797 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.96■□□□□ 0.632e-6■■■■□ 26.2
VPS39-203ENST00000561797 EFCC1Q9HA90 598 aa18.96■□□□□ 0.63
VPS39-203ENST00000561797 ADD2P35612 726 aa18.95■□□□□ 0.62
VPS39-203ENST00000561797 SPP2Q13103 211 aa18.95■□□□□ 0.62
VPS39-203ENST00000561797 TSHZ3Q63HK5 1081 aa18.95■□□□□ 0.62
VPS39-203ENST00000561797 LCORLQ8N3X6 602 aa18.95■□□□□ 0.62
VPS39-203ENST00000561797 CRNKL1Q9BZJ0 848 aaKnown RBP18.95■□□□□ 0.62
VPS39-203ENST00000561797 CPA4Q9UI42 421 aa18.95■□□□□ 0.62
VPS39-203ENST00000561797 USP17L5A8MUK1 530 aa18.94■□□□□ 0.62
VPS39-203ENST00000561797 GDF11O95390 407 aa18.94■□□□□ 0.62
VPS39-203ENST00000561797 CHGBP05060 677 aa18.94■□□□□ 0.62
VPS39-203ENST00000561797 JAG1P78504 1218 aa18.94■□□□□ 0.62
VPS39-203ENST00000561797 METTL16Q86W50 562 aaKnown RBP18.94■□□□□ 0.62
VPS39-203ENST00000561797 GPATCH3Q96I76 525 aa18.94■□□□□ 0.62
VPS39-203ENST00000561797 ARMT1Q9H993 441 aa18.94■□□□□ 0.62
VPS39-203ENST00000561797 POLR3DP05423 398 aaPredicted RBP18.93■□□□□ 0.62
VPS39-203ENST00000561797 CYP2C8P10632 490 aa18.93■□□□□ 0.62
VPS39-203ENST00000561797 KIF22Q14807 665 aa18.93■□□□□ 0.62
VPS39-203ENST00000561797 SHROOM1Q2M3G4 852 aaPredicted RBP18.93■□□□□ 0.62
VPS39-203ENST00000561797 C17orf99Q6UX52 265 aa18.93■□□□□ 0.62
VPS39-203ENST00000561797 TTC6Q86TZ1 520 aa18.93■□□□□ 0.62
VPS39-203ENST00000561797 ZNF280CQ8ND82 737 aa18.93■□□□□ 0.62
VPS39-203ENST00000561797 SDR42E1Q8WUS8 393 aa18.93■□□□□ 0.62
VPS39-203ENST00000561797 ARHGAP39Q9C0H5 1083 aa18.93■□□□□ 0.62
VPS39-203ENST00000561797 AS3MTQ9HBK9 375 aa18.93■□□□□ 0.62
VPS39-203ENST00000561797 MBD4O95243 580 aa18.92■□□□□ 0.62
VPS39-203ENST00000561797 ASNSP08243 561 aa18.92■□□□□ 0.62
VPS39-203ENST00000561797 SOX10P56693 466 aa18.92■□□□□ 0.62
VPS39-203ENST00000561797 ARHGEF6Q15052 776 aa18.92■□□□□ 0.62
VPS39-203ENST00000561797 PARK7Q99497 189 aaKnown RBP18.92■□□□□ 0.62
VPS39-203ENST00000561797 TBC1D2Q9BYX2 928 aa18.92■□□□□ 0.62
VPS39-203ENST00000561797 MCM9Q9NXL9 1143 aa18.92■□□□□ 0.62
VPS39-203ENST00000561797 SERPINB13Q9UIV8 391 aa18.92■□□□□ 0.62
VPS39-203ENST00000561797 PTPN22Q9Y2R2 807 aa18.92■□□□□ 0.62
VPS39-203ENST00000561797 PLCD1P51178 756 aa18.91■□□□□ 0.62
VPS39-203ENST00000561797 HMGCS2P54868 508 aa18.91■□□□□ 0.62
VPS39-203ENST00000561797 LACTBP83111 547 aaPredicted RBP18.91■□□□□ 0.62
VPS39-203ENST00000561797 ZSCAN25Q6NSZ9 544 aa18.91■□□□□ 0.62
VPS39-203ENST00000561797 ADGRA2Q96PE1 1338 aa18.91■□□□□ 0.62
VPS39-203ENST00000561797 PRKAB2O43741 272 aa18.9■□□□□ 0.62
VPS39-203ENST00000561797 UBE3CQ15386 1083 aa18.9■□□□□ 0.62
VPS39-203ENST00000561797 TREML2Q5T2D2 321 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms