RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 PPP2R3BQ9Y5P8 575 aa7.62□□□□□ -1.19
SPG11-221ENST00000560299 MINDY4BA8MYZ0 360 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 PRKAB2O43741 272 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 MYO1BO43795 1136 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 HSPA6P17066 643 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 EPS15P42566 896 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 APLP1P51693 650 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 FKBP1BP68106 108 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 FGD1P98174 961 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 DLGAP5Q15398 846 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 SBK1Q52WX2 424 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 RUFY3Q7L099 469 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 MICALL2Q8IY33 904 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 RASEFQ8IZ41 740 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 NCOA7Q8NI08 942 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 SH3RF3Q8TEJ3 882 aaPredicted RBP7.61□□□□□ -1.19
SPG11-221ENST00000560299 TGFBRAP1Q8WUH2 860 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 SDR42E1Q8WUS8 393 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 CHMP4CQ96CF2 233 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 KIF12Q96FN5 646 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 MXD3Q9BW11 206 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 KRT23Q9C075 422 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 ZSWIM6Q9HCJ5 1215 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 MYOZ2Q9NPC6 264 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 DCP1AQ9NPI6 582 aaPredicted RBP7.61□□□□□ -1.19
SPG11-221ENST00000560299 PDRG1Q9NUG6 133 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 USP40Q9NVE5 1235 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 MCM9Q9NXL9 1143 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 TAOK2Q9UL54 1235 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 PALD1Q9ULE6 856 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 GJA3Q9Y6H8 435 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 CEP350Q5VT06 3117 aa7.61□□□□□ -1.19
SPG11-221ENST00000560299 USP17L12C9JPN9 530 aa7.6□□□□□ -1.19
SPG11-221ENST00000560299 USP17L21D6R901 530 aa7.6□□□□□ -1.19
SPG11-221ENST00000560299 E7EWF7 191 aa7.6□□□□□ -1.19
SPG11-221ENST00000560299 POLR3DP05423 398 aaPredicted RBP7.6□□□□□ -1.19
SPG11-221ENST00000560299 HSP90AA1P07900 732 aaKnown RBP7.6□□□□□ -1.19
SPG11-221ENST00000560299 MCM5P33992 734 aa7.6□□□□□ -1.19
SPG11-221ENST00000560299 HIRAP54198 1017 aaPredicted RBP7.6□□□□□ -1.19
SPG11-221ENST00000560299 HAND2P61296 217 aa7.6□□□□□ -1.19
SPG11-221ENST00000560299 PDE4BQ07343 736 aa7.6□□□□□ -1.19
SPG11-221ENST00000560299 PPARAQ07869 468 aa7.6□□□□□ -1.19
SPG11-221ENST00000560299 CFAP100Q494V2 611 aa7.6□□□□□ -1.19
SPG11-221ENST00000560299 AKNAD1Q5T1N1 836 aa7.6□□□□□ -1.19
SPG11-221ENST00000560299 CTR9Q6PD62 1173 aa7.6□□□□□ -1.19
SPG11-221ENST00000560299 DHX32Q7L7V1 743 aaKnown RBP7.6□□□□□ -1.19
SPG11-221ENST00000560299 TTC6Q86TZ1 520 aa7.6□□□□□ -1.19
SPG11-221ENST00000560299 ZSCAN31Q96LW9 406 aaPredicted RBP7.6□□□□□ -1.19
SPG11-221ENST00000560299 UPF3BQ9BZI7 483 aaKnown RBP7.6□□□□□ -1.19
SPG11-221ENST00000560299 EPB41L4AQ9HCS5 686 aaPredicted RBP7.6□□□□□ -1.19
SPG11-221ENST00000560299 TOMM22Q9NS69 142 aa7.6□□□□□ -1.19
SPG11-221ENST00000560299 ANAPC4Q9UJX5 808 aa7.6□□□□□ -1.19
SPG11-221ENST00000560299 WDR19Q8NEZ3 1342 aa7.59□□□□□ -1.19
SPG11-221ENST00000560299 ERICH2A1L162 156 aa7.59□□□□□ -1.19
SPG11-221ENST00000560299 K7ELQ4 463 aaPredicted RBP7.59□□□□□ -1.19
SPG11-221ENST00000560299 WNT10BO00744 389 aa7.59□□□□□ -1.19
SPG11-221ENST00000560299 FOXP2O15409 715 aa7.59□□□□□ -1.19
SPG11-221ENST00000560299 HLA-DOAP06340 250 aa7.59□□□□□ -1.19
SPG11-221ENST00000560299 RPS6KB1P23443 525 aa7.59□□□□□ -1.19
SPG11-221ENST00000560299 RHBDL3P58872 404 aa7.59□□□□□ -1.19
SPG11-221ENST00000560299 SART3Q15020 963 aaKnown RBP7.59□□□□□ -1.19
SPG11-221ENST00000560299 KIF4BQ2VIQ3 1234 aa7.59□□□□□ -1.19
SPG11-221ENST00000560299 ADCK5Q3MIX3 580 aa7.59□□□□□ -1.19
SPG11-221ENST00000560299 APOBEC3HQ6NTF7 200 aaKnown RBP7.59□□□□□ -1.19
SPG11-221ENST00000560299 CDC42EP5Q6NZY7 148 aa7.59□□□□□ -1.19
SPG11-221ENST00000560299 APOBEC3FQ8IUX4 373 aaKnown RBP7.59□□□□□ -1.19
SPG11-221ENST00000560299 MAPKAPK5Q8IW41 473 aa7.59□□□□□ -1.19
SPG11-221ENST00000560299 STAG1Q8WVM7 1258 aa7.59□□□□□ -1.19
SPG11-221ENST00000560299 ESR2Q92731 530 aa7.59□□□□□ -1.19
SPG11-221ENST00000560299 MTA3Q9BTC8 594 aa7.59□□□□□ -1.19
SPG11-221ENST00000560299 ALDH8A1Q9H2A2 487 aaPredicted RBP7.59□□□□□ -1.19
SPG11-221ENST00000560299 DHX36Q9H2U1 1008 aaKnown RBP7.59□□□□□ -1.19
SPG11-221ENST00000560299 FLT1P17948 1338 aa7.58□□□□□ -1.2
SPG11-221ENST00000560299 TIE1P35590 1138 aa7.58□□□□□ -1.2
SPG11-221ENST00000560299 TNNI2P48788 182 aa7.58□□□□□ -1.2
SPG11-221ENST00000560299 TNFAIP1Q13829 316 aa7.58□□□□□ -1.2
SPG11-221ENST00000560299 CCDC178Q5BJE1 867 aa7.58□□□□□ -1.2
SPG11-221ENST00000560299 C12orf60Q5U649 245 aa7.58□□□□□ -1.2
SPG11-221ENST00000560299 FAM83AQ86UY5 434 aa7.58□□□□□ -1.2
SPG11-221ENST00000560299 IQCA1Q86XH1 822 aa7.58□□□□□ -1.2
SPG11-221ENST00000560299 ZSCAN29Q8IWY8 852 aaPredicted RBP7.58□□□□□ -1.2
SPG11-221ENST00000560299 TMTC2Q8N394 836 aa7.58□□□□□ -1.2
SPG11-221ENST00000560299 ZNF526Q8TF50 670 aaPredicted RBP7.58□□□□□ -1.2
SPG11-221ENST00000560299 DCPSQ96C86 337 aaKnown RBP7.58□□□□□ -1.2
SPG11-221ENST00000560299 IDI2Q9BXS1 227 aa7.58□□□□□ -1.2
SPG11-221ENST00000560299 TRIM34Q9BYJ4 488 aa7.58□□□□□ -1.2
SPG11-221ENST00000560299 TBC1D2Q9BYX2 928 aa7.58□□□□□ -1.2
SPG11-221ENST00000560299 MKNK2Q9HBH9 465 aa7.58□□□□□ -1.2
SPG11-221ENST00000560299 SH2B1Q9NRF2 756 aaPredicted RBP7.58□□□□□ -1.2
SPG11-221ENST00000560299 MKRN1Q9UHC7 482 aaKnown RBP7.58□□□□□ -1.2
SPG11-221ENST00000560299 LIMCH1Q9UPQ0 1083 aa7.58□□□□□ -1.2
SPG11-221ENST00000560299 TRPC6Q9Y210 931 aa7.58□□□□□ -1.2
SPG11-221ENST00000560299 COLQQ9Y215 455 aaPredicted RBP7.58□□□□□ -1.2
SPG11-221ENST00000560299 BAZ2AQ9UIF9 1905 aaKnown RBP7.58□□□□□ -1.2
SPG11-221ENST00000560299 LAMA4Q16363 1823 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 RASSF10A6NK89 507 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 PRC1O43663 620 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 ORC4O43929 436 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 ENTPD3O75355 529 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 WDHD1O75717 1129 aaPredicted RBP7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms