RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 ENAHQ8N8S7 591 aaPredicted RBP12.31□□□□□ -0.44
CUX1-217ENST00000558836 CNBD1Q8NA66 436 aa12.31□□□□□ -0.44
CUX1-217ENST00000558836 KCNG4Q8TDN1 519 aa12.31□□□□□ -0.44
CUX1-217ENST00000558836 ESR2Q92731 530 aa12.31□□□□□ -0.44
CUX1-217ENST00000558836 RNF41Q9H4P4 317 aaPredicted RBP12.31□□□□□ -0.44
CUX1-217ENST00000558836 MROH7-TTC4A0A0A0MT08 1334 aa12.31□□□□□ -0.44
CUX1-217ENST00000558836 MYH13Q9UKX3 1938 aa12.31□□□□□ -0.44
CUX1-217ENST00000558836 CASZ1Q86V15 1759 aa12.3□□□□□ -0.44
CUX1-217ENST00000558836 DIXDC1Q155Q3 683 aa12.3□□□□□ -0.44
CUX1-217ENST00000558836 OXER1Q8TDS5 423 aa12.3□□□□□ -0.44
CUX1-217ENST00000558836 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.3□□□□□ -0.44
CUX1-217ENST00000558836 ZNF202O95125 648 aa12.3□□□□□ -0.44
CUX1-217ENST00000558836 FMNL1O95466 1100 aaPredicted RBP12.3□□□□□ -0.44
CUX1-217ENST00000558836 LAMB2P55268 1798 aa12.3□□□□□ -0.44
CUX1-217ENST00000558836 CACNA1SQ13698 1873 aa12.3□□□□□ -0.44
CUX1-217ENST00000558836 OFD1O75665 1012 aa12.3□□□□□ -0.44
CUX1-217ENST00000558836 YEATS4O95619 227 aa12.3□□□□□ -0.44
CUX1-217ENST00000558836 PFKFB1P16118 471 aa12.3□□□□□ -0.44
CUX1-217ENST00000558836 IFNAR1P17181 557 aa12.3□□□□□ -0.44
CUX1-217ENST00000558836 PTGS1P23219 599 aa12.3□□□□□ -0.44
CUX1-217ENST00000558836 DIS3L2Q8IYB7 885 aaKnown RBP12.3□□□□□ -0.44
CUX1-217ENST00000558836 CRACR2BQ8N4Y2 399 aaPredicted RBP12.3□□□□□ -0.44
CUX1-217ENST00000558836 ANKRD2Q9GZV1 360 aa12.3□□□□□ -0.44
CUX1-217ENST00000558836 KCNF1Q9H3M0 494 aa12.3□□□□□ -0.44
CUX1-217ENST00000558836 PLEKHA8P1O95397 391 aa12.29□□□□□ -0.44
CUX1-217ENST00000558836 USP17L8P0C7I0 530 aa12.29□□□□□ -0.44
CUX1-217ENST00000558836 SLC39A14Q15043 492 aa12.29□□□□□ -0.44
CUX1-217ENST00000558836 SEC23AQ15436 765 aa12.29□□□□□ -0.44
CUX1-217ENST00000558836 NBPF11Q86T75 865 aa12.29□□□□□ -0.44
CUX1-217ENST00000558836 DZIP1Q86YF9 867 aaKnown RBP12.29□□□□□ -0.44
CUX1-217ENST00000558836 TRIM22Q8IYM9 498 aa12.29□□□□□ -0.44
CUX1-217ENST00000558836 ZSCAN10Q96SZ4 725 aaPredicted RBP12.29□□□□□ -0.44
CUX1-217ENST00000558836 DCP1AQ9NPI6 582 aaPredicted RBP12.29□□□□□ -0.44
CUX1-217ENST00000558836 MTMR7Q9Y216 660 aa12.29□□□□□ -0.44
CUX1-217ENST00000558836 A0A0U1RQG5 324 aaPredicted RBP12.29□□□□□ -0.44
CUX1-217ENST00000558836 GRIN1Q05586 938 aa12.29□□□□□ -0.44
CUX1-217ENST00000558836 KIAA2012Q0VF49 1180 aa12.29□□□□□ -0.44
CUX1-217ENST00000558836 IQCB1Q15051 598 aa12.29□□□□□ -0.44
CUX1-217ENST00000558836 IFIT1BQ5T764 474 aaKnown RBP12.29□□□□□ -0.44
CUX1-217ENST00000558836 MCM9Q9NXL9 1143 aa12.29□□□□□ -0.44
CUX1-217ENST00000558836 VPS54Q9P1Q0 977 aa12.29□□□□□ -0.44
CUX1-217ENST00000558836 FAM205CA6NFA0 338 aa12.28□□□□□ -0.44
CUX1-217ENST00000558836 GOLGA6L19H0YKK7 550 aa12.28□□□□□ -0.44
CUX1-217ENST00000558836 TRIM37O94972 964 aa12.28□□□□□ -0.44
CUX1-217ENST00000558836 LRMPQ12912 555 aa12.28□□□□□ -0.44
CUX1-217ENST00000558836 STX1AQ16623 288 aa12.28□□□□□ -0.44
CUX1-217ENST00000558836 DPCR1Q3MIW9 517 aa12.28□□□□□ -0.44
CUX1-217ENST00000558836 DNTTIP2Q5QJE6 756 aaKnown RBP12.28□□□□□ -0.44
CUX1-217ENST00000558836 PRR5LQ6MZQ0 368 aa12.28□□□□□ -0.44
CUX1-217ENST00000558836 SHC4Q6S5L8 630 aa12.28□□□□□ -0.44
CUX1-217ENST00000558836 SHISA4Q96DD7 197 aa12.28□□□□□ -0.44
CUX1-217ENST00000558836 MAP3K14Q99558 947 aa12.28□□□□□ -0.44
CUX1-217ENST00000558836 PYCARDQ9ULZ3 195 aa12.28□□□□□ -0.44
CUX1-217ENST00000558836 A0A1W2PQ27 194 aa12.28□□□□□ -0.44
CUX1-217ENST00000558836 A0A1W2PQ64 194 aa12.28□□□□□ -0.44
CUX1-217ENST00000558836 A0A1W2PQD8 194 aa12.28□□□□□ -0.44
CUX1-217ENST00000558836 BECN2A8MW95 431 aa12.28□□□□□ -0.44
CUX1-217ENST00000558836 U2AF2P26368 475 aaKnown RBP eCLIP12.28□□□□□ -0.441e-7■■■■■ 27.9
CUX1-217ENST00000558836 TOB1P50616 345 aaPredicted RBP12.28□□□□□ -0.44
CUX1-217ENST00000558836 PTPAQ15257 358 aa12.28□□□□□ -0.44
CUX1-217ENST00000558836 CCDC186Q7Z3E2 898 aa12.28□□□□□ -0.44
CUX1-217ENST00000558836 V9GY48 417 aaPredicted RBP12.28□□□□□ -0.44
CUX1-217ENST00000558836 CTAGE5O15320 804 aa12.27□□□□□ -0.44
CUX1-217ENST00000558836 MMP1P03956 469 aa12.27□□□□□ -0.44
CUX1-217ENST00000558836 NOSTRINQ8IVI9 506 aa12.27□□□□□ -0.44
CUX1-217ENST00000558836 AOPEPQ8N6M6 819 aa12.27□□□□□ -0.44
CUX1-217ENST00000558836 TDRD7Q8NHU6 1098 aaKnown RBP12.27□□□□□ -0.44
CUX1-217ENST00000558836 DYNLL2Q96FJ2 89 aa12.27□□□□□ -0.44
CUX1-217ENST00000558836 ZNF75DP51815 510 aa12.27□□□□□ -0.45
CUX1-217ENST00000558836 DHX40Q8IX18 779 aaKnown RBP12.27□□□□□ -0.45
CUX1-217ENST00000558836 BRIP1Q9BX63 1249 aa12.27□□□□□ -0.45
CUX1-217ENST00000558836 QTRT2Q9H974 415 aaKnown RBP12.27□□□□□ -0.45
CUX1-217ENST00000558836 CABP5Q9NP86 173 aa12.27□□□□□ -0.45
CUX1-217ENST00000558836 KIAA1468Q9P260 1216 aa12.27□□□□□ -0.45
CUX1-217ENST00000558836 ANAPC4Q9UJX5 808 aa12.27□□□□□ -0.45
CUX1-217ENST00000558836 PCDHB6Q9Y5E3 794 aa12.27□□□□□ -0.45
CUX1-217ENST00000558836 SPATA31A6Q5VVP1 1343 aa12.27□□□□□ -0.45
CUX1-217ENST00000558836 SCN7AQ01118 1682 aa12.27□□□□□ -0.45
CUX1-217ENST00000558836 SLC3A2P08195 630 aaKnown RBP12.27□□□□□ -0.45
CUX1-217ENST00000558836 VEGFAP15692 232 aaPredicted RBP12.27□□□□□ -0.45
CUX1-217ENST00000558836 GRAPQ13588 217 aa12.27□□□□□ -0.45
CUX1-217ENST00000558836 NOM1Q5C9Z4 860 aaKnown RBP12.27□□□□□ -0.45
CUX1-217ENST00000558836 IQCA1Q86XH1 822 aa12.27□□□□□ -0.45
CUX1-217ENST00000558836 TMTC2Q8N394 836 aa12.27□□□□□ -0.45
CUX1-217ENST00000558836 GRAPLQ8TC17 118 aaPredicted RBP12.27□□□□□ -0.45
CUX1-217ENST00000558836 RPGRQ92834 1020 aaKnown RBP12.27□□□□□ -0.45
CUX1-217ENST00000558836 CRNKL1Q9BZJ0 848 aaKnown RBP12.27□□□□□ -0.45
CUX1-217ENST00000558836 A0A1B0GUL6 1792 aa12.26□□□□□ -0.45
CUX1-217ENST00000558836 GYS1P13807 737 aa12.26□□□□□ -0.45
CUX1-217ENST00000558836 CMA1P23946 247 aa12.26□□□□□ -0.45
CUX1-217ENST00000558836 SYKP43405 635 aa12.26□□□□□ -0.45
CUX1-217ENST00000558836 GPSM2P81274 684 aa12.26□□□□□ -0.45
CUX1-217ENST00000558836 NOLC1Q14978 699 aaKnown RBP eCLIP12.26□□□□□ -0.457e-6■■■□□ 16.5
CUX1-217ENST00000558836 SAFBQ15424 915 aaKnown RBP eCLIP12.26□□□□□ -0.45
CUX1-217ENST00000558836 EARS2Q5JPH6 523 aaKnown RBP12.26□□□□□ -0.45
CUX1-217ENST00000558836 SH3RF3Q8TEJ3 882 aaPredicted RBP12.26□□□□□ -0.45
CUX1-217ENST00000558836 TNRC6CQ9HCJ0 1690 aaKnown RBP12.26□□□□□ -0.45
CUX1-217ENST00000558836 DEXIO95424 95 aa12.26□□□□□ -0.45
CUX1-217ENST00000558836 AKAP17AQ02040 695 aaKnown RBP12.26□□□□□ -0.45
CUX1-217ENST00000558836 PNOCQ13519 176 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms