RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 NAA16Q6N069 864 aaPredicted RBP13.59□□□□□ -0.23
CCDC88C-213ENST00000557455 MIER1Q8N108 512 aa13.59□□□□□ -0.23
CCDC88C-213ENST00000557455 SH3RF3Q8TEJ3 882 aaPredicted RBP13.59□□□□□ -0.23
CCDC88C-213ENST00000557455 DBNDD2Q9BQY9 259 aa13.59□□□□□ -0.23
CCDC88C-213ENST00000557455 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.59□□□□□ -0.23
CCDC88C-213ENST00000557455 SLC45A1Q9Y2W3 748 aa13.59□□□□□ -0.23
CCDC88C-213ENST00000557455 CCDC84Q86UT8 332 aaPredicted RBP13.58□□□□□ -0.24
CCDC88C-213ENST00000557455 SMCR8Q8TEV9 937 aaPredicted RBP13.58□□□□□ -0.24
CCDC88C-213ENST00000557455 AATFQ9NY61 560 aaKnown RBP eCLIP13.58□□□□□ -0.24
CCDC88C-213ENST00000557455 LOC285556D6RIA3 1793 aa13.58□□□□□ -0.24
CCDC88C-213ENST00000557455 SIPA1L1O43166 1804 aa13.57□□□□□ -0.24
CCDC88C-213ENST00000557455 ZBTB7BO15156 539 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-213ENST00000557455 CYP2E1P05181 493 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-213ENST00000557455 PLCG2P16885 1265 aa13.57□□□□□ -0.24
CCDC88C-213ENST00000557455 CAP2P40123 477 aa13.57□□□□□ -0.24
CCDC88C-213ENST00000557455 PRKCZQ05513 592 aa13.57□□□□□ -0.24
CCDC88C-213ENST00000557455 MTFR1Q15390 333 aa13.57□□□□□ -0.24
CCDC88C-213ENST00000557455 ZNF512BQ96KM6 892 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-213ENST00000557455 TBC1D2Q9BYX2 928 aa13.57□□□□□ -0.24
CCDC88C-213ENST00000557455 DHX36Q9H2U1 1008 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-213ENST00000557455 PI4KBQ9UBF8 816 aa13.57□□□□□ -0.24
CCDC88C-213ENST00000557455 BIN2Q9UBW5 565 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-213ENST00000557455 AGTPBP1Q9UPW5 1226 aa13.57□□□□□ -0.24
CCDC88C-213ENST00000557455 NOP58Q9Y2X3 529 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-213ENST00000557455 DOCK3Q8IZD9 2030 aa13.56□□□□□ -0.24
CCDC88C-213ENST00000557455 RLBP1P12271 317 aa13.56□□□□□ -0.24
CCDC88C-213ENST00000557455 UBXN2AP68543 259 aa13.56□□□□□ -0.24
CCDC88C-213ENST00000557455 SPP2Q13103 211 aa13.56□□□□□ -0.24
CCDC88C-213ENST00000557455 TREML2Q5T2D2 321 aa13.56□□□□□ -0.24
CCDC88C-213ENST00000557455 DIEXFQ68CQ4 756 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-213ENST00000557455 PROCA1Q8NCQ7 364 aaPredicted RBP13.56□□□□□ -0.24
CCDC88C-213ENST00000557455 ZNF280CQ8ND82 737 aa13.56□□□□□ -0.24
CCDC88C-213ENST00000557455 TGFBRAP1Q8WUH2 860 aa13.56□□□□□ -0.24
CCDC88C-213ENST00000557455 HERC5Q9UII4 1024 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-213ENST00000557455 PNMA3Q9UL41 463 aa13.56□□□□□ -0.24
CCDC88C-213ENST00000557455 MYH1P12882 1939 aa13.55□□□□□ -0.24
CCDC88C-213ENST00000557455 USP17L5A8MUK1 530 aa13.55□□□□□ -0.24
CCDC88C-213ENST00000557455 TNPO2O14787 897 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-213ENST00000557455 IGSF3O75054 1194 aa13.55□□□□□ -0.24
CCDC88C-213ENST00000557455 ZAP70P43403 619 aa13.55□□□□□ -0.24
CCDC88C-213ENST00000557455 PPP4CP60510 307 aa13.55□□□□□ -0.24
CCDC88C-213ENST00000557455 ADGRA1Q86SQ6 560 aa13.55□□□□□ -0.24
CCDC88C-213ENST00000557455 MAPKAPK5Q8IW41 473 aa13.55□□□□□ -0.24
CCDC88C-213ENST00000557455 ANKRD13CQ8N6S4 541 aa13.55□□□□□ -0.24
CCDC88C-213ENST00000557455 SLAIN1Q8ND83 568 aa13.55□□□□□ -0.24
CCDC88C-213ENST00000557455 NKX2-3Q8TAU0 364 aa13.55□□□□□ -0.24
CCDC88C-213ENST00000557455 CCDC8Q9H0W5 538 aaPredicted RBP13.55□□□□□ -0.24
CCDC88C-213ENST00000557455 AS3MTQ9HBK9 375 aa13.55□□□□□ -0.24
CCDC88C-213ENST00000557455 DBNLQ9UJU6 430 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-213ENST00000557455 GABRQQ9UN88 632 aa13.55□□□□□ -0.24
CCDC88C-213ENST00000557455 ADCY3O60266 1144 aa13.54□□□□□ -0.24
CCDC88C-213ENST00000557455 CCL5P13501 91 aa13.54□□□□□ -0.24
CCDC88C-213ENST00000557455 FLT3LGP49771 235 aa13.54□□□□□ -0.24
CCDC88C-213ENST00000557455 HMGCS2P54868 508 aa13.54□□□□□ -0.24
CCDC88C-213ENST00000557455 PABPC4Q13310 644 aaKnown RBP eCLIP13.54□□□□□ -0.24
CCDC88C-213ENST00000557455 RRP1BQ14684 758 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-213ENST00000557455 EAF2Q96CJ1 260 aaPredicted RBP13.54□□□□□ -0.24
CCDC88C-213ENST00000557455 TRIM34Q9BYJ4 488 aa13.54□□□□□ -0.24
CCDC88C-213ENST00000557455 RNF208Q9H0X6 261 aa13.54□□□□□ -0.24
CCDC88C-213ENST00000557455 TLR7Q9NYK1 1049 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-213ENST00000557455 PCDH10Q9P2E7 1040 aa13.54□□□□□ -0.24
CCDC88C-213ENST00000557455 GJB1P08034 283 aa13.53□□□□□ -0.24
CCDC88C-213ENST00000557455 HABP4Q5JVS0 413 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-213ENST00000557455 CEP85Q6P2H3 762 aa13.53□□□□□ -0.24
CCDC88C-213ENST00000557455 FOXP4Q8IVH2 680 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-213ENST00000557455 CRACR2BQ8N4Y2 399 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-213ENST00000557455 COA7Q96BR5 231 aa13.53□□□□□ -0.24
CCDC88C-213ENST00000557455 SHISA4Q96DD7 197 aa13.53□□□□□ -0.24
CCDC88C-213ENST00000557455 PIH1D3Q9NQM4 214 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-213ENST00000557455 PALD1Q9ULE6 856 aa13.53□□□□□ -0.24
CCDC88C-213ENST00000557455 FLT1P17948 1338 aa13.53□□□□□ -0.24
CCDC88C-213ENST00000557455 ZBED9Q6R2W3 1325 aa13.53□□□□□ -0.24
CCDC88C-213ENST00000557455 IDH1O75874 414 aaKnown RBP13.52□□□□□ -0.25
CCDC88C-213ENST00000557455 ASNSP08243 561 aa13.52□□□□□ -0.25
CCDC88C-213ENST00000557455 CYP7A1P22680 504 aa13.52□□□□□ -0.25
CCDC88C-213ENST00000557455 GJA8P48165 433 aa13.52□□□□□ -0.25
CCDC88C-213ENST00000557455 GCLCP48506 637 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-213ENST00000557455 DYNLL1P63167 89 aaKnown RBP13.52□□□□□ -0.25
CCDC88C-213ENST00000557455 FAM110CQ1W6H9 321 aa13.52□□□□□ -0.25
CCDC88C-213ENST00000557455 SH3D19Q5HYK7 790 aa13.52□□□□□ -0.25
CCDC88C-213ENST00000557455 ERC1Q8IUD2 1116 aa13.52□□□□□ -0.25
CCDC88C-213ENST00000557455 PANK1Q8TE04 598 aa13.52□□□□□ -0.25
CCDC88C-213ENST00000557455 PXYLP1Q8TE99 480 aa13.52□□□□□ -0.25
CCDC88C-213ENST00000557455 TAOK2Q9UL54 1235 aa13.52□□□□□ -0.25
CCDC88C-213ENST00000557455 HLA-DOAP06340 250 aa13.51□□□□□ -0.25
CCDC88C-213ENST00000557455 ELNP15502 786 aa13.51□□□□□ -0.25
CCDC88C-213ENST00000557455 IRF5Q13568 498 aa13.51□□□□□ -0.25
CCDC88C-213ENST00000557455 METTL16Q86W50 562 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-213ENST00000557455 CERS3Q8IU89 383 aa13.51□□□□□ -0.25
CCDC88C-213ENST00000557455 WDR18Q9BV38 432 aa13.51□□□□□ -0.25
CCDC88C-213ENST00000557455 UNC93B1Q9H1C4 597 aa13.51□□□□□ -0.25
CCDC88C-213ENST00000557455 ASCC2Q9H1I8 757 aaPredicted RBP13.51□□□□□ -0.25
CCDC88C-213ENST00000557455 DNAJC18Q9H819 358 aa13.51□□□□□ -0.25
CCDC88C-213ENST00000557455 TMOD4Q9NZQ9 345 aa13.51□□□□□ -0.25
CCDC88C-213ENST00000557455 SAP30BPQ9UHR5 308 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-213ENST00000557455 EXOC6BQ9Y2D4 811 aa13.51□□□□□ -0.25
CCDC88C-213ENST00000557455 GDF11O95390 407 aa13.5□□□□□ -0.25
CCDC88C-213ENST00000557455 INHAP05111 366 aa13.5□□□□□ -0.25
CCDC88C-213ENST00000557455 MS4A1P11836 297 aa13.5□□□□□ -0.25
CCDC88C-213ENST00000557455 USP5P45974 858 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms